Tag rearrangement [55 articles] Export

Recent papers classified by the tag rearrangement.

	Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements [My Copy] Genome Research, Vol. 14, No. 7. (July 2004), pp. 1394-1403. by Aaron C. E. Darling, Bob Mau, Frederick R. Blattner, Nicole T. Perna posted to synteny software sequence rotation_1 recombination rearrangement open_source java genome evolution browser alignment by rneches on 2009-10-17 05:37:07 as along with 13 people and 2 groups foxpowa APRegier ArtemPankin hpaces Neeperando bcondon semrich operon catmat AaronDarling azazello mariakmejia druvus Khavkin's lab gatech-compgenomics
	Evidence of extensive homologous recombination in the core genome of rickettsia. [My Copy] Comparative and functional genomics (2009) by J. Wu, T. Yu, Q. Bao, F. Zhao posted to rickettsia rearrangement genome by druvus on 2009-10-06 16:19:18 as along with 1 person nyyu
	ROBIN: a tool for genome rearrangement of block-interchanges [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2780-2782. by Chin L. Lu, Tsui C. Wang, Ying C. Lin, Chuan Y. Tang posted to software rearrangement genome by druvus on 2009-10-06 16:08:11 as along with 3 people natstreet GustavoLacerda operon
	Genome aliquoting with double cut and join [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 1. (2009), S2. by Robert Warren, David Sankoff posted to rearrangement genome duplication by druvus on 2009-10-06 15:56:03 as
	Efficient Sampling of Parsimonious Inversion Histories with Application to Genome Rearrangement in Yersinia [My Copy] Genome Biol Evol, Vol. 2009, No. 0. (14 July 2009), pp. 153-164. by Istvan Miklos, Aaron E. Darling posted to rearrangement pestis genome by druvus on 2009-10-06 15:39:39 as
	50 Million Years of Genomic Stasis in Endosymbiotic Bacteria [My Copy] Science, Vol. 296, No. 5577. (28 June 2002), pp. 2376-2379. by Ivica Tamas, Lisa Klasson, Bjorn Canback, et al.A. Kristina Naslund, Ann-Sofie Eriksson, Jennifer J. Wernegreen, Jonas P. Sandstrom, Nancy A. Moran, Siv G. E. Andersson posted to symbiosis rearrangement genomics evolution bacteria by behindtherabbit on 2009-09-17 16:41:40 as along with 3 people kmachemer operon bjorns
	BreakDancer: an algorithm for high-resolution mapping of genomic structural variation [My Copy] Nature Methods, Vol. 6, No. 9. (09 August 2009), pp. 677-681. by Ken Chen, John W. Wallis, Michael D. McLellan, et al.David E. Larson, Joelle M. Kalicki, Craig S. Pohl, Sean D. McGrath, Michael C. Wendl, Qunyuan Zhang, Devin P. Locke, Xiaoqi Shi, Robert S. Fulton, Timothy J. Ley, Richard K. Wilson, Li Ding, Elaine R. Mardis posted to rearrangement genome breakpoint by gdb on 2009-08-28 18:39:49 as along with 13 people and 1 group n00c Leaflet heliopais stubrown dakelley fenghezi daed natstreet druvus sitalange qayub jasontsai danmaclean Journal picks
	Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes [My Copy] Genome Biology, Vol. 10, No. 8. (21 August 2009), R86. by Xianjun Dong, David Fredman, Boris Lenhard posted to synteny rearrangement genome by gdb on 2009-08-23 14:01:02 as along with 4 people operon natstreet druvus megraw
	Long-range regulation is a major driving force in maintaining genome integrity [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (15 August 2009), 203. by Emmanuel Mongin, Ken Dewar, Mathieu Blanchette posted to rearrangement by cisevol to the group BergmanLab on 2009-08-20 10:56:35 as along with 8 people klo mox daveGerrard mkotlyar xianjun maximilianh JustinCrocker MickElliot
	Specific pathways prevent duplication-mediated genome rearrangements [My Copy] Nature, Vol. 460, No. 7258. (29 July 2009), pp. 984-989. by Christopher D. Putnam, Tikvah K. Hayes, Richard D. Kolodner posted to synteny rearrangement genome_evolution by stajich to the group Mycology on 2009-08-19 21:09:55 as along with 5 people and 2 groups fenghezi polivares rdiaz jbhiatt biomcgary BergmanLab Journal picks
	Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 20. (30 September 2003), pp. 11484-11489. by W. James Kent, Robert Baertsch, Angie Hinrichs, Webb Miller, David Haussler posted to rearrangement genome evolution duplication by gdb on 2009-08-17 11:51:22 as along with 11 people and 2 groups daveGerrard ilyashl hrogers semrich polivares bryankr pcahan1 djkt gjuggler nuin Auger BergmanLab Dead 60's
	Evolutionary Breakpoints in the Gibbon Suggest Association between Cytosine Methylation and Karyotype Evolution [My Copy] PLoS Genet, Vol. 5, No. 6. (26 Jun 2009), e1000538. by Lucia Carbone, R. Alan Harris, Gery M. Vessere, et al.Alan R. Mootnick, Sean Humphray, Jane Rogers, Sung K. Kim, Jeffrey D. Wall, David Martin, Jerzy Jurka, Aleksandar Milosavljevic, Pieter J. de Jong posted to breakpoint rearrangement methylation karyotype human evolution chromosome by robfsouza on 2009-08-05 17:02:29 as along with 1 person djkt
	Repeat mediated gene duplication in the Drosophila pseudoobscura genome. [My Copy] Gene, Vol. 438, No. 1-2. (1 June 2009), pp. 1-7. by R. P. Meisel posted to drosophila inversion rearrangement by cisevol to the group BergmanLab on 2009-07-20 11:48:11 as along with 1 person operon
	YY1 helps to bring loose ends together. [My Copy] Genes & development, Vol. 21, No. 10. (15 May 2007), pp. 1145-1152. by K. Calame, M. Atchison posted to 3d ctcf igh loop rearrangement recombination yy1 by sebastien_vigneau to the group CTCF on 2009-07-17 15:22:22 as
	Cytoskeletal rearrangements accompanying salmonella entry into epithelial cells. [My Copy] Journal of cell science, Vol. 99 ( Pt 2) (June 1991), pp. 283-296. by B. B. Finlay, S. Ruschkowski, S. Dedhar posted to actin cytoskeleton invasion rearrangement by katholt on 2009-07-16 11:45:20 as
	Chromosomal Rearrangements between Serotype A and D Strains in Cryptococcus neoformans [My Copy] PLoS ONE, Vol. 4, No. 5. (13 May 2009), e5524. by Sheng Sun, Jianping Xu posted to cryptococcus genome genome_evolution rearrangement synteny by stajich on 2009-05-13 20:41:23 as along with 1 group Mycology
	Breakpoint graphs and ancestral genome reconstructions. [My Copy] Genome research (6 April 2009) by Max A A. Alekseyev, Pavel A A. Pevzner posted to randombreakage rearrangement by maximilianh on 2009-05-04 09:38:27 as along with 2 people djkt rdiaz
	Recovering genome rearrangements in the mammalian phylogeny [My Copy] Genome Research, Vol. 19, No. 5. (May 2009), pp. 934-942. by Hao Zhao, Guillaume Bourque posted to geneorder rearrangement by maximilianh on 2009-05-04 09:37:42 as along with 2 people shikin djkt
	Genome Plasticity and ori-ter Rebalancing in Salmonella typhi [My Copy] Molecular Biology and Evolution, Vol. 23, No. 2. (20 February 2006), pp. 365-371. by Gui-Rong Liu, Wei-Qiao Liu, Randal N. Johnston, Kenneth E. Sanderson, Shao-Xian Li, Shu-Lin Liu posted to genome operon rearrangement ribosomal rr by katholt on 2009-04-29 18:07:57 as along with 1 person AaronDarling
	Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution. [My Copy] Genome Res, Vol. 15, No. 1. (January 2005), pp. 1-18. by S. Richards, Y. Liu, B. R. Bettencourt, et al.P. Hradecky, S. Letovsky, R. Nielsen, K. Thornton, M. J. Hubisz, R. Chen, R. P. Meisel, O. Couronne, S. Hua, M. A. Smith, P. Zhang, J. Liu, H. J. Bussemaker, M. F. van Batenburg, S. L. Howells, S. E. Scherer, E. Sodergren, B. B. Matthews, M. A. Crosby, A. J. Schroeder, D. Ortiz-Barrientos, C. M. Rives, M. L. Metzker, D. M. Muzny, G. Scott, D. Steffen, D. A. Wheeler, K. C. Worley, P. Havlak, K. J. Durbin, A. Egan, R. Gill, J. Hume, M. B. Morgan, G. Miner, C. Hamilton, Y. Huang, L. Waldron, D. Verduzco, K. P. Clerc-Blankenburg, I. Dubchak, M. A. Noor, W. Anderson, K. P. White, A. G. Clark, S. W. Schaeffer, W. Gelbart, G. M. Weinstock, R. A. Gibbs posted to cis-regulatory_evolution comparative_genomics rearrangement by alhufton on 2009-04-29 11:09:50 as along with 10 people and 3 groups briann tsackton jshapiro operon indigoviolet penka adepace emptyhb cisevol skumagai EisenLab Nie cis-regulatory-evolution
	Equal transcription rates of productively and nonproductively rearranged immunoglobulin micro heavy chain alleles in a pro-B cell line. [My Copy] RNA (New York, N.Y.) (10 April 2009) by Andrea B B. Eberle, Kai Herrmann, Hans-Martin M. Jäck, Oliver Mühlemann posted to ig immunoglobulin nmd prob ptc rearrangement recombination by sebastien_vigneau on 2009-04-15 20:06:50 as
	Inferring ancestral gene order. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 452 (2008), pp. 365-383. by J. M. Catchen, J. S. Conery, J. H. Postlethwait posted to fish rearrangement synteny by alhufton on 2009-03-11 12:43:46 as
	CNV-seq, a new method to detect copy number variation using high-throughput sequencing. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 80. by Chao Xie, Martti T. Tammi posted to acgh bioinformatics cnv copy genomics microarray number personal rearrangement sequencing solexa variation by sleepingcell to the group Bioinformatics on 2009-03-11 03:51:41 as along with 18 people hzoltan biovils stubrown cthachuk GustavoLacerda n00c darian bmenten natstreet sameersoi svenrahmann xiechao semrich pkonings rdiaz dswan neils magusina
	A fast algorithm for the multiple genome rearrangement problem with weighted reversals and transpositions [My Copy] BMC Bioinformatics, Vol. 9 (04 December 2008), 516. by Martin, Enno Ohlebusch posted to rearrangement by cisevol to the group BergmanLab on 2008-12-04 21:30:46 as along with 2 people nuin Neeperando
	A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000234. by Cedric Chauve, Eric Tannier posted to mammals rearrangement by cisevol to the group BergmanLab on 2008-11-29 09:34:39 as along with 2 people druvus djkt
	Syntenator: multiple gene order alignments with a gene-specific scoring function. [My Copy] Algorithms for molecular biology : AMB, Vol. 3 (06 November 2008), 14. by Christian Rödelsperger, Christoph Dieterich posted to rearrangement by cisevol to the group BergmanLab on 2008-11-07 20:26:34 as along with 5 people and 1 group avilella Neeperando treangen maximilianh druvus Ensembl Compara citations
	Dynamics of Genome Rearrangement in Bacterial Populations [My Copy] PLoS Genet, Vol. 4, No. 7. (18 July 2008), e1000128. by Aaron E. Darling, István Miklós, Mark A. Ragan posted to bacteria evolution genome population rearrangement by neils on 2008-10-05 10:10:50 as along with 8 people nyyu AaronDarling lewista treangen druvus Ema djkt jjray
	Genome Rearrangements in Mammalian Evolution: Lessons From Human and Mouse Genomes [My Copy] Genome Research, Vol. 13, No. 1. (1 January 2003), pp. 37-45. by Pavel Pevzner, Glenn Tesler posted to rearrangement human genomics by timflutre on 2008-09-23 16:28:30 as along with 2 people APRegier hausen
	Chromosome evolution in eukaryotes: a multi-kingdom perspective [My Copy] Trends in Genetics, Vol. 21, No. 12. (December 2005), pp. 673-682. by Avril Coghlan, Evan E. Eichler, Stephen G. Oliver, Andrew H. Paterson, Lincoln Stein posted to rearrangement eukaryote by timflutre on 2008-09-22 16:13:25 as along with 1 person david_parsons
	The chromosomal polymorphism linked to variation in social behavior in the white-throated sparrow (Zonotrichia albicollis) is a complex rearrangement and suppressor of recombination [My Copy] Genetics, Vol. 179, No. 3. (18 July 2008), pp. genetics.108.088229-1468. by James W. Thomas, Mario Caceres, Joshua J. Lowman, et al.Caroline B. Morehouse, Meghan E. Short, Erin L. Baldwin, Donna L. Maney, Christa L. Martin posted to chromosome evolution rearrangement thomas by aprasad on 2008-07-23 19:11:43 as along with 2 people APRegier jbsaltz
	Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement [My Copy] Genome Res. (14 July 2008), gr.080119.108. by Andrew L. Hufton, Detlef Groth, Martin Vingron, Hans Lehrach, Albert J. Poustka, Georgia Panopoulou posted to rearrangement vertebrate by cisevol to the group BergmanLab on 2008-07-17 20:29:47 as along with 3 people grahamc alhufton neils
	Precise detection of rearrangement breakpoints in mammalian chromosomes [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Claire Lemaitre, Eric Tannier, Christian Gautier, Marie F. Sagot posted to rearrangement duplication genomics repeats by timflutre on 2008-07-16 11:17:18 as along with 5 people and 1 group daveGerrard alivahdat cisevol Neeperando nuin BergmanLab
	Evolutionary changes in gene regulation from a comparative analysis of multiple Drosophila species. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 18 (2007), pp. 12-21. by L. Hu, D. Segrè, T. F. Smith posted to cis-regulatory flies rearrangement by cisevol to the group cis-regulatory-evolution on 2008-06-12 21:57:48 as along with 1 person pradiptaray
	The Role of Rearrangement at the Second Ig Heavy Chain Locus in Maintaining B Cell Tolerance to DNA [My Copy] J Immunol, Vol. 180, No. 11. (1 June 2008), pp. 7721-7727. by Yang Liu, Lisa Li, Chandra Mohan posted to editing mice rearrangement tolerance by breden to the group SFUAntibodyResearch on 2008-05-20 03:31:59 as
	Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses [My Copy] Proceedings of the National Academy of Sciences, Vol. 102, No. 37. (13 September 2005), pp. 13206-13211. by John E. Bowers, Miguel A. Arias, Rochelle Asher, et al.Jennifer A. Avise, Robert T. Ball, Gene A. Brewer, Ryan W. Buss, Amy H. Chen, Thomas M. Edwards, James C. Estill, Heather E. Exum, Valorie H. Goff, Kristen L. Herrick, Cassie L. Steele, Santhosh Karunakaran, Gmerice K. Lafayette, Cornelia Lemke, Barry S. Marler, Shelley L. Masters, Joana M. Mcmillan, Lisa K. Nelson, Graham A. Newsome, Chike C. Nwakanma, Rosana N. Odeh, Cynthia A. Phelps, Elizabeth A. Rarick, Carl J. Rogers, Sean P. Ryan, Keimun A. Slaughter, Carol A. Soderlund, Haibao Tang, Rod A. Wing, Andrew H. Paterson posted to grasses heterochromatin map physical rearrangement sorghum synteny by tanghaibao on 2008-04-25 04:19:08 as
	An improved method for detecting and delineating genomic regions with altered gene expression in cancer [My Copy] Genome Biology, Vol. 9, No. 1. (2008) by Bjorn Nilsson, Mikael Johansson, Anders Heyden, Sven Nelander, Thoas Fioretos posted to aberration expression pgelike rearrangement by barriot on 2008-01-22 05:24:45 as along with 4 people rdiaz natstreet ptrobajo jfr
	Comparative genome maps of the pangolin, hedgehog, sloth, anteater and human revealed by cross-species chromosome painting: further insight into the ancestral karyotype and genome evolution of eutherian mammals [My Copy] Chromosome Research, Vol. 14, No. 3. (April 2006), pp. 283-296. by Yang, Fengtang, Graphodatsky, et al. Alexander, Li, Tangliang, Fu, Beiyuan, Dobigny, Gauthier, Wang, Jinghuan, Perelman, Polina, Serdukova, Natalya, Su, Weiting, O'Brien, Patricia, Wang, Yingxiang, Ferguson Smith, Malcolm, Volobouev, Vitaly, Nie, Wenhui posted to cytogenetics mammal rearrangement tree by aprasad on 2008-01-18 23:34:36 as
	Cross-species chromosome painting in the golden mole and elephant-shrew: support for the mammalian clades Afrotheria and Afroinsectiphillia but not Afroinsectivora. [My Copy] Proc Biol Sci, Vol. 271, No. 1547. (22 July 2004), pp. 1477-1484. by T. J. Robinson, B. Fu, Ferguson M. A. Smith, F. Yang posted to cytogenetics mammal rearrangement tree by aprasad on 2008-01-18 23:06:09 as
	RNA-mediated epigenetic programming of a genome-rearrangement pathway [My Copy] Nature, Vol. 451, No. 7175. (28 November 2007), pp. 153-158. by Mariusz Nowacki, Vikram Vijayan, Yi Zhou, Klaas Schotanus, Thomas G. Doak, Laura F. Landweber posted to dna epigenetics rearrangement rna by margaritis on 2008-01-10 12:05:21 as along with 7 people natstreet balicea mtagaya sebastien_vigneau zwang rebeccamancy rschulz
	Genomic rearrangements in the spotlight [My Copy] Nature Genetics, Vol. 40, No. 1., pp. 6-7. by Lucy R. Osborne posted to disease meiosis microdeletion microduplication newsviews rearrangement by ealloza on 2008-01-07 12:07:13 as along with 1 person jlangdon
	A recurrent inversion on the eutherian X chromosome [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18571-18576. by Mario Caceres, National, Robert T. Sullivan, James W. Thomas posted to genome_evolution nisc rearrangement by aprasad on 2007-12-11 14:44:13 as
	Are There Rearrangement Hotspots in the Human Genome? [My Copy] PLoS Comput Biol, Vol. 3, No. 11. (9 November 2007) by Max A A. Alekseyev, Pavel A A. Pevzner posted to fragile genome-wide hotspot human random rearrangement by ealloza on 2007-11-26 11:15:41 as along with 2 people maximilianh stajich
	Chromosomal rearrangements and microRNAs: a new cancer link with clinical implications. [My Copy] J Clin Invest, Vol. 117, No. 8. (August 2007), pp. 2059-2066. by G. A. Calin, C. M. Croce posted to aberration cancer microrna rearrangement review by ealloza on 2007-11-16 10:17:50 as
	From microscopes to microarrays: dissecting recurrent chromosomal rearrangements [My Copy] Nat Rev Genet, Vol. 8, No. 11. (November 2007), pp. 869-883. by Beverly S. Emanuel, Sulagna C. Saitta posted to aberration duplication rearrangement review by ealloza to the group BioinfoCIPF on 2007-10-22 11:21:18 as along with 3 people rdiaz jdiezperezj giovenko
	Chromosomal Microdeletions and Genes Functions: A cluster of chromosomal microdeletions and the deleted genes functions [My Copy] European Journal of Human Genetics, Vol. aop, No. current. by Ruti Parvari, Eli Hershkovitz posted to aberration chromosome disease functional_annotation rearrangement by ealloza to the group BioinfoCIPF on 2007-10-02 17:32:06 as
	Are There Rearrangement Hotspots in the Human Genome? [My Copy] PLoS Computational Biology, Vol. preprint, No. 2007. (1 September 2007), e209.eor. by Max Alekseyev, Pavel A. Pevzner posted to analysis bioinformatics chromosome evolution genome genomics rearrangement by kmdaily on 2007-09-15 17:30:47 as
	Age-Dependent TCR Revision Mediated by Interaction between alphabeta TCR and Self-Antigens [My Copy] J Immunol, Vol. 179, No. 4. (15 August 2007), pp. 2163-2169. by Mitsuyo Takase, Edith M. Kanagawa, Osami Kanagawa posted to tcr t-cells secondary rearrangement age by breden to the group SFUAntibodyResearch on 2007-08-19 20:34:28 as along with 1 group FAB-lab
	Progenetix.net: an online repository for molecular cytogenetic aberration data. [My Copy] Bioinformatics, Vol. 17, No. 12. (December 2001), pp. 1228-1229. by M. Baudis, M. L. Cleary posted to aberration cancer cgh cytogenetics database human karyotype rearrangement by ealloza on 2007-06-08 11:31:07 as along with 1 person and 1 group archroad BioinfoCIPF
	Online database and bioinformatics toolbox to support data mining in cancer cytogenetics. [My Copy] Biotechniques, Vol. 40, No. 3. (March 2006) by M. Baudis posted to aberration cancer cgh cytogenetics database human karyotype rearrangement by ealloza on 2007-06-08 11:29:14 as along with 1 group BioinfoCIPF
	The impact of translocations and gene fusions on cancer causation [My Copy] Nature Reviews Cancer, Vol. 7, No. 4. (15 March 2007), pp. 233-245. by Felix Mitelman, Bertil Johansson, Fredrik Mertens posted to cancer gene_fusion human rearrangement translocation by ealloza on 2007-03-26 15:59:28 as along with 2 people and 1 group Garamonfok waghsk BioinfoCIPF

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Tag rearrangement [55 articles] Export

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