Tag refs_ox [at least 200 articles] Export

Recent papers classified by the tag refs_ox.

	Change in direction of flagellar rotation is the basis of the chemotactic response in Escherichia coli. [My Copy] Nature, Vol. 249, No. 452. (3 May 1974), pp. 74-77. by S. H. Larsen, R. W. Reader, E. N. Kort, W. W. Tso, J. Adler posted to chemotaxis coli escherichia flagellar refs_ox by chrn on 2007-05-20 10:13:36 as
	Autocorrelation function and power spectrum of two-state random processes used in neurite guidance. [My Copy] Biophys J, Vol. 75, No. 3. (September 1998), pp. 1189-1196. by D. J. Odde, H. M. Buettner posted to autocorrelation ch5 power process random refs_ox spectrum two-state by chrn on 2007-05-15 23:37:44 as
	Conformational spread in a ring of proteins: a stochastic approach to allostery. [My Copy] J Mol Biol, Vol. 308, No. 3. (4 May 2001), pp. 541-553. by T. A. Duke, N. Le Novère, D. Bray posted to nucleation receptors refs_ox by chrn on 2007-05-15 23:11:49 as along with 1 person lenov
	Langevin equation, Fokker-Planck equation and cell migration [My Copy] Bulletin of Mathematical Biology, Vol. 55, No. 3. (May 1993), pp. 585-608. by M. Schienbein, H. Gruler posted to fokker-planck langevin refs_ox by chrn on 2007-05-07 17:50:15 as
	$My PDF tyson_00_fractional.pdf$ Fractional step methods applied to a chemotaxis model [My Copy] Journal of Mathematical Biology, Vol. V41, No. 5. (1 November 2000), pp. 455-475. by Rebecca Tyson, L. G. Stern, Randall J. Leveque posted to chemotaxis fractaion method refs_ox step by chrn on 2007-05-07 17:24:41 as along with 1 person jstajic
	Protein molecules as computational elements in living cells [My Copy] Nature, Vol. 376, No. 6538. (27 July 1995), pp. 307-312. by D. Bray posted to refs_ox by chrn on 2007-05-07 16:51:48 as along with 5 people and 1 group arsyed reidw lna livingthingdan lenov livingthing
	Two alternative models for spontaneous flagellar motor switching in Halobacterium salinarium. [My Copy] J Theor Biol, Vol. 181, No. 4. (21 August 1996), pp. 343-358. by H. Naber posted to bacteria flagellar motor phototaxis refs_ox by chrn on 2007-05-07 16:31:30 as
	Protein phosphorylation and bacterial chemotaxis. [My Copy] Cold Spring Harb Symp Quant Biol, Vol. 53 Pt 1 (1988), pp. 41-48. by J. F. Hess, R. B. Bourret, K. Oosawa, P. Matsumura, M. I. Simon posted to bacteria chemotaxis phosphorylation refs_ox by chrn on 2007-05-07 16:17:24 as
	Chemomodulation of cellular movement, collective formation of vortices by swarming bacteria, and colonial development [My Copy] Physica A Statistical Mechanics and its Applications, Vol. 238 (February 1997), pp. 181-197. by E. Ben-Jacob, I. Cohen, A. Czirók, T. Vicsek, D. L. Gutnick posted to bacteria colony pattern refs_ox by chrn on 2007-05-07 16:14:04 as
	Complex bacterial patterns. [My Copy] Nature, Vol. 373, No. 6515. (16 February 1995), pp. 566-567. by Eshel Ben-Jacob, Inon Cohen, Ofer Shochet, Igor Aranson, Herbert Levine, Lev Tsimring posted to bacteria pattern refs_ox by chrn on 2007-05-07 16:11:17 as along with 1 person sergiun
	Cooperative self-organization of microorganisms [My Copy] Advances in Physics, Vol. 49 (June 2000), pp. 395-554. by E. Ben-Jacob, I. Cohen, H. Levine posted to cooperative refs_ox self-ortanisation by chrn on 2007-05-07 16:10:18 as along with 1 person sergiun
	The home stretch, a first analysis of the nearly completed genome of Rhodobacter sphaeroides 2.4.1 [My Copy] Photosynthesis Research, Vol. 70, No. 1. (27 October 2001), pp. 19-41. by Chris Mackenzie, Madhusudan Choudhary, Frank Larimer, et al.Paul Predki, Stephanie Stilwagen, Judith Armitage, Robert Barber, Timothy Donohue, Jonathan Hosler, Jack Newman, James Shapleigh, R. Sockett, Jill Zeilstra-Ryalls, Samuel Kaplan posted to genome refs_ox rhodobacter sphaeroides by chrn on 2007-05-05 16:17:29 as
	One-component systems dominate signal transduction in prokaryotes. [My Copy] Trends Microbiol, Vol. 13, No. 2. (February 2005), pp. 52-56. by L. E. Ulrich, E. V. Koonin, I. B. Zhulin posted to chemotaxis pathway refs_ox signal transduction by chrn on 2007-05-05 15:09:20 as along with 2 people and 1 group matzke beatrizfernandez Microbial-Ecology
	The positioning of cytoplasmic protein clusters in bacteria. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 21. (23 May 2006), pp. 8209-8214. by S. R. Thompson, G. H. Wadhams, J. P. Armitage posted to bacteria cluster cytoplasmic refs_ox by chrn on 2007-05-05 13:25:15 as along with 2 people madhadron RebeccaHamer
	Stoichiometry and turnover in single, functioning membrane protein complexes [My Copy] Nature, Vol. 443, No. 7109. (13 September 2006), pp. 355-358. by Mark C. Leake, Jennifer H. Chandler, George H. Wadhams, Fan Bai, Richard M. Berry, Judith P. Armitage posted to bacteria chemotaxis membrane protein refs_ox by chrn on 2007-05-05 13:24:44 as along with 8 people spiltz zeldin schmidtm OliverHarriman haisent ocs balabu gabe_rosser
	Swarming Ring Patterns in Bacterial Colonies Exposed to Ultraviolet Radiation [My Copy] Physical Review Letters, Vol. 87, No. 15. (2001), 158102. by Anna M. Delprato, Azadeh Samadani, A. Kudrolli, L. S. Tsimring posted to bacteria colony pattern radiation reaction-diffusion refs_ox ultraviolet by chrn on 2007-05-04 11:36:16 as
	Signal processing and flagellar motor switching during phototaxis of Halobacterium salinarum. [My Copy] Genome Res, Vol. 13, No. 11. (November 2003), pp. 2406-2412. by T. Nutsch, W. Marwan, D. Oesterhelt, E. D. Gilles posted to bacteria flagellar motor phototaxis refs_ox by chrn on 2007-05-03 23:30:31 as
	Control of speed modulation (chemokinesis) in the unidirectional rotary motor of Sinorhizobium meliloti [My Copy] Molecular Microbiology, Vol. 56, No. 3. (May 2005), pp. 708-718. by Ursula Attmannspacher, Birgit Scharf, Rudiger Schmitt posted to bacteria chemokinesis flagellar meliloti motor refs_ox sinorhizobium by chrn on 2007-05-03 23:29:14 as
	How white noise generates power-law switching in bacterial flagellar motors. [My Copy] Phys Rev Lett, Vol. 94, No. 20. (27 May 2005) by Y. Tu, G. Grinstein posted to bacteria flagellar motor power-law refs_ox by chrn on 2007-05-03 23:27:52 as
	Direct observation of steps in rotation of the bacterial flagellar motor [My Copy] Nature, Vol. 437, No. 7060. (2005), pp. 916-919. by Yoshiyuki Sowa, Alexander D. Rowe, Mark C. Leake, et al.Toshiharu Yakushi, Michio Homma, Akihiko Ishijima, Richard M. Berry posted to bacteria flagellar motor refs_ox by chrn on 2007-05-03 23:27:05 as along with 2 people and 2 groups barry gabe_rosser structural_bioinformatics Bioinformatics
	Calculating spatial statistics for velocity jump processes with experimentally observed reorientation parameters. [My Copy] J Math Biol, Vol. 51, No. 5. (November 2005), pp. 527-556. by E. A. Codling, N. A. Hill posted to jump processes refs_ox velocity by chrn on 2007-05-03 23:26:32 as
	Proposed model for the flagellar rotary motor. [My Copy] Colloids Surf B Biointerfaces, Vol. 46, No. 1. (25 November 2005), pp. 32-44. by T. Mitsui, H. Ohshima posted to flagellar motor refs_ox by chrn on 2007-05-03 23:25:50 as
	Torque-speed relationship of the bacterial flagellar motor. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 5. (31 January 2006), pp. 1260-1265. by J. Xing, F. Bai, R. Berry, G. Oster posted to bacteria flagellar motor refs_ox speed torque by chrn on 2007-05-03 23:25:00 as along with 1 person kdesmond
	Spatial pattern formation in biology: I. Dermal wound healing. II. Bacterial patterns [My Copy] Journal of the Franklin Institute In Part Special Issue on Biomathematics, Vol. 335, No. 2. (March 1998), pp. 303-332. by J. D. Murray, J. Cook, R. Tyson, S. R. Lubkin posted to bacteria formation pattern refs_ox by chrn on 2007-05-01 13:38:18 as
	Interface growth and pattern formation in bacterial colonies [My Copy] Physica A: Statistical and Theoretical Physics, Vol. 249, No. 1-4. (1 February 1998), pp. 517-524. by M. Matsushita, J. Wakita, H. Itoh, et al.I. Rafols, T. Matsuyama, H. Sakaguchi, M. Mimura posted to bacteria colony pattern refs_ox by chrn on 2007-05-01 09:59:26 as
	Formation of colony patterns by a bacterial cell population [My Copy] Physica A: Statistical Mechanics and its Applications, Vol. 274, No. 1-2. (1 December 1999), pp. 190-199. by M. Matsushita, J. Wakita, H. Itoh, et al.K. Watanabe, T. Arai, T. Matsuyama, H. Sakaguchi, M. Mimura posted to bacteria colony pattern refs_ox by chrn on 2007-05-01 09:58:58 as
	Reaction-diffusion modelling of bacterial colony patterns [My Copy] Physica A: Statistical Mechanics and its Applications, Vol. 282, No. 1-2. (1 July 2000), pp. 283-303. by Masayasu Mimura, Hideo Sakaguchi, Mitsugu Matsushita posted to bacteria colony pattern reaction-diffusion refs_ox by chrn on 2007-05-01 09:53:22 as along with 1 person sergiun
	Aggregating pattern dynamics in a chemotaxis model including growth [My Copy] Physica A: Statistical and Theoretical Physics, Vol. 230, No. 3-4. (1 September 1996), pp. 499-543. by Masayasu Mimura, Tohru Tsujikawa posted to chemotaxis growth pattern refs_ox by chrn on 2007-05-01 09:48:56 as along with 1 person TheFlamingRed
	Cooperative organization of bacterial colonies: from genotype to morphotype. [My Copy] Annu Rev Microbiol, Vol. 52 (1998), pp. 779-806. by E. Ben-Jacob, I. Cohen, D. L. Gutnick posted to bacteria colony genotype morphotype refs_ox by chrn on 2007-04-30 16:44:26 as
	Bacterial linguistic communication and social intelligence. [My Copy] Trends Microbiol, Vol. 12, No. 8. (August 2004), pp. 366-372. by E. Ben Jacob, I. Becker, Y. Shapira, H. Levine posted to bacteria communication intelligence refs_ox social by chrn on 2007-04-30 16:43:41 as along with 2 people and 1 group VRadenovic margaritis DSTO-CAS
	Physical schemata underlying biological pattern formation-examples, issues and strategies. [My Copy] Phys Biol, Vol. 1, No. 1-2. (June 2004) by H. Levine, E. Ben-Jacob posted to formation pattern refs_ox by chrn on 2007-04-30 16:43:13 as along with 1 person madhadron
	Self-engineering capabilities of bacteria. [My Copy] Journal of the Royal Society, Interface / the Royal Society, Vol. 3, No. 6. (22 February 2006), pp. 197-214. by E. Ben-Jacob, H. Levine posted to bacteria refs_ox self-engineering by chrn on 2007-04-30 16:40:15 as along with 1 person sergiun
	Complex patterns formed by motile cells of Escherichia coli [My Copy] Nature, Vol. 349, No. 6310. (14 February 1991), pp. 630-633. by E. O. Budrene, H. C. Berg posted to bacteria chemotaxis formation pattern refs_ox by chrn on 2007-04-29 18:48:04 as along with 1 person chiufanlee
	Dynamics of formation of symmetrical patterns by chemotactic bacteria. [My Copy] Nature, Vol. 376, No. 6535. (6 July 1995), pp. 49-53. by E. O. Budrene, H. C. Berg posted to bacteria chemotaxis formation pattern refs_ox by chrn on 2007-04-29 18:47:48 as along with 1 person forgoston
	Quantitative cell biology with the Virtual Cell. [My Copy] Trends Cell Biol, Vol. 13, No. 11. (November 2003), pp. 570-576. by B. M. Slepchenko, J. C. Schaff, I. Macara, L. M. Loew posted to cell refs_ox software virtual by chrn on 2007-04-27 10:54:59 as along with 2 people and 2 groups agomez roland_ewald dIEMoSIRIS MoSi-Rostock
	Computational cell biology: spatiotemporal simulation of cellular events. [My Copy] Annu Rev Biophys Biomol Struct, Vol. 31 (2002), pp. 423-441. by B. M. Slepchenko, J. C. Schaff, J. H. Carson, L. M. Loew posted to cell refs_ox virtual by chrn on 2007-04-27 10:54:27 as along with 1 person ddcttrl
	The Virtual Cell: a software environment for computational cell biology. [My Copy] Trends Biotechnol, Vol. 19, No. 10. (October 2001), pp. 401-406. by L. M. Loew, J. C. Schaff posted to cell refs_ox software virtual by chrn on 2007-04-27 10:53:51 as along with 1 person and 2 groups roland_ewald dIEMoSIRIS MoSi-Rostock
	Space in systems biology of signaling pathways--towards intracellular molecular crowding in silico. [My Copy] FEBS letters, Vol. 579, No. 8. (21 March 2005), pp. 1783-1788. by Kouichi Takahashi, Satya N. Arjunan, Masaru Tomita posted to pathway refs_ox signalling space by chrn on 2007-04-27 10:47:38 as along with 11 people and 3 groups gabe_rosser ddcttrl ocs monocyte biplabbose biosv carmaus dagmar m_j csanford arjunan dIEMoSIRIS MoSi-Rostock compneur
	E-Cell 2: multi-platform E-Cell simulation system. [My Copy] Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1727-1729. by K. Takahashi, N. Ishikawa, Y. Sadamoto, et al.H. Sasamoto, S. Ohta, A. Shiozawa, F. Miyoshi, Y. Naito, Y. Nakayama, M. Tomita posted to cell e-cell refs_ox simulation software by chrn on 2007-04-27 10:45:35 as along with 2 people ynaito mattis23
	E-CELL: software environment for whole-cell simulation [My Copy] Bioinformatics, Vol. 15, No. 1. (1 January 1999), pp. 72-84. by M. Tomita, K. Hashimoto, K. Takahashi, et al.T. S. Shimizu, Y. Matsuzaki, F. Miyoshi, K. Saito, S. Tanida, K. Yugi, J. C. Venter, C. A. Hutchison posted to cell e-cell refs_ox simulation software by chrn on 2007-04-27 10:45:13 as along with 3 people antonkratz ynaito johnpeterwalsh
	Computer simulation of the phosphorylation cascade controlling bacterial chemotaxis. [My Copy] Mol Biol Cell, Vol. 4, No. 5. (May 1993), pp. 469-482. by D. Bray, R. B. Bourret, M. I. Simon posted to bacterial chemotaxis refs_ox by chrn on 2007-04-26 20:50:47 as along with 1 person lenov
	A model of excitation and adaptation in bacterial chemotaxis. [My Copy] Biophys J, Vol. 68, No. 2. (February 1995), pp. 708-722. by D. C. Hauri, J. Ross posted to adaptation bacterial chemotaxis excitation refs_ox by chrn on 2007-04-26 20:46:30 as
	A free-energy-based stochastic simulation of the Tar receptor complex. [My Copy] J Mol Biol, Vol. 286, No. 4. (5 March 1999), pp. 1059-1074. by C. J. Morton-Firth, T. S. Shimizu, D. Bray posted to complex receptor refs_ox tar by chrn on 2007-04-26 20:43:35 as
	Quantitative modeling of sensitivity in bacterial chemotaxis: the role of coupling among different chemoreceptor species. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8223-8228. by B. A. Mello, Y. Tu posted to bacterial chemoreceptor chemotaxis refs_ox by chrn on 2007-04-26 20:40:20 as
	Design and diversity in bacterial chemotaxis: a comparative study in Escherichia coli and Bacillus subtilis. [My Copy] PLoS Biol, Vol. 2, No. 2. (February 2004) by C. V. Rao, J. R. Kirby, A. P. Arkin posted to bacterial chemotaxis refs_ox by chrn on 2007-04-26 20:33:55 as along with 5 people and 1 group Vincent_Rouilly lingchong BUiGEM Pao-Yang RebeccaHamer BUiGEM
	Simulated diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli. [My Copy] J Bacteriol, Vol. 187, No. 1. (January 2005), pp. 45-53. by K. Lipkow, S. S. Andrews, D. Bray posted to chey refs_ox by chrn on 2007-04-26 20:29:32 as along with 7 people and 2 groups ocs roland_ewald mattis23 vladimirov RebeccaHamer csanford gabe_rosser dIEMoSIRIS MoSi-Rostock
	MetaModel: a program for modelling and control analysis of metabolic pathways on the IBM PC and compatibles. [My Copy] Comput Appl Biosci, Vol. 7, No. 1. (January 1991), pp. 89-93. by A. Cornish-Bowden, J. H. Hofmeyr posted to ch3 refs_ox by chrn on 2007-04-25 09:01:27 as
	Assessment of three-dimensional biofilm models through direct comparison with confocal microscopy imaging. [My Copy] Water Sci Technol, Vol. 49, No. 11-12. (2004), pp. 177-185. by J. B. Xavier, C. Picioreanu, M. C. van Loosdrecht posted to biofilms model refs_ox by chrn on 2007-04-24 22:29:15 as
	Particle-based multidimensional multispecies biofilm model. [My Copy] Appl Environ Microbiol, Vol. 70, No. 5. (May 2004), pp. 3024-3040. by C. Picioreanu, J. U. Kreft, M. C. Van Loosdrecht posted to biofilms ch3 model multispecies refs_ox by chrn on 2007-04-24 22:26:31 as
	Mathematical Biology I [My Copy] (01 January 2002) by J. D. Murray posted to ch3 refs_ox by chrn on 2007-04-19 19:30:22 as along with 5 people Scis0000002 maburkitt vtraag lrsantos Borelli

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chemotaxis	61
ch3	50
bacteria	22
bacterial	20
ch2	20
flagellar	19
motor	19
rhodobacter	16
sphaeroides	15
pattern	12
ch1	11
taxis	10
colony	9
biofilms	7
pathway	7
simulation	7
software	7
cell	6
cellular	5
formation	5
phototaxis	5
receptor	5
receptors	5
adaptation	4
chemoreceptor	4
cluster	4
levy_walk	4
pattern_formation	4
signalling	4
automata	3
chemoreceptors	3
cooperative	3
flagella	3
galvanotaxis	3
individual-based	3
localisation	3
membrane	3
network	3
protein	3
random	3
rhodobacter_sphaeroides	3
signal	3
virtual	3
3d	2
biochemical	2
biology	2
cellular_automata	2
chey	2
clusters	2
coli	2
dynamics	2
e-cell	2
escherichia	2
flagellar_motor	2
fokker-planck	2
hydrodynamics	2
in	2
langevin	2
magnetotaxis	2
model	2
nucleation	2
processes	2
random_walk	2
reaction-diffusion	2
sensitivity	2
system_biology	2
thermotaxis	2
transduction	2
walk	2
agar	1
ca	1
chermoreceptor	1
compucell	1
cytoplasmic	1
diel	1
diffusion	1
excitation	1
flagella_motor	1
flim	1
fractal	1
gmres	1
intelligence	1
kinetics	1
migration	1
morphogenesis	1
power	1
radiation	1
reactions	1
regulation	1
response	1
social	1
spectrum	1
speed	1
stochastic	1
systems	1
torque	1
tower	1
tracking	1
two-state	1
ultraviolet	1

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