Tag refs_snps [35 articles] Export

Recent papers classified by the tag refs_snps.

	A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. [My Copy] Systematic biology, Vol. 52, No. 5. (October 2003), pp. 696-704. by S. Guindon, O. Gascuel posted to evolution max_likelihood phylogenetic phyml refs_catalytic refs_snps software by chrn on 2006-02-10 15:28:01 as along with 13 people and 1 group chica calderonv swp09 oceanwind BioNica druvus bpb aprasad lyongu treangen Haggan cdallett Auger Dead 60's
	Predicting the functional consequences of non-synonymous single nucleotide polymorphisms: structure-based assessment of amino acid variation. [My Copy] J Mol Biol, Vol. 307, No. 2. (23 March 2001), pp. 683-706. by D. Chasman, R. M. Adams posted to refs_snps snps structure by chrn on 2006-01-23 14:21:01 as along with 2 people and 1 group chad_davis caporaso biomedical-nlp
	Ascertainment bias in studies of human genome-wide polymorphism. [My Copy] Genome Res, Vol. 15, No. 11. (November 2005), pp. 1496-1502. by A. G. Clark, M. J. Hubisz, C. D. Bustamante, S. H. Williamson, R. Nielsen posted to polymorphisms refs_snps by chrn on 2006-01-10 15:08:25 as along with 4 people and 1 group stevanspringer ashandanj djkt jermth FAB-lab
	Loss of protein structure stability as a major causative factor in monogenic disease. [My Copy] J Mol Biol, Vol. 353, No. 2. (21 October 2005), pp. 459-473. by P. Yue, Z. Li, J. Moult posted to refs_snps by chrn on 2006-01-10 10:14:47 as along with 1 person ssgong
	Sequence-based prediction of pathological mutations. [My Copy] Proteins, Vol. 57, No. 4. (1 December 2004), pp. 811-819. by C. Ferrer-Costa, M. Orozco, X. de la Cruz posted to refs_snps by chrn on 2006-01-10 10:05:00 as along with 1 person and 3 groups marcius References for 3DSim paper BioinfoCIPF SGU-CIPF
	Combining protein evolution and secondary structure. [My Copy] Mol Biol Evol, Vol. 13, No. 5. (May 1996), pp. 666-673. by J. L. Thorne, N. Goldman, D. T. Jones posted to refs_snps by chrn on 2005-12-05 11:46:17 as along with 2 people gjuggler tale
	MUSCLE: multiple sequence alignment with high accuracy and high throughput [My Copy] Nucl. Acids Res., Vol. 32, No. 5. (19 March 2004), pp. 1792-1797. by Robert C. Edgar posted to muscle refs_catalytic refs_snps by chrn on 2005-12-05 01:30:41 as along with 29 people and 2 groups mgomes jeargle tomjad foxpowa esyoun natstreet dquest BioNica gjuggler edvin yylin treangen sebk agustinarce fhsantanna nachtalp bpb jwm Haggan sanchezbuelna timflutre olympos martainn newton1234 skumagai bmaust sconlan dmp kcrawlik Radiation_Damage Stressosome
	PAML: a program package for phylogenetic analysis by maximum likelihood. [My Copy] Computer applications in the biosciences : CABIOS, Vol. 13, No. 5. (October 1997), pp. 555-556. by Z. Yang posted to paml refs_snps by chrn on 2005-12-01 16:46:36 as along with 15 people and 3 groups seb1 thegoose2 alexeid druvus jmjimenez bjorns chad_davis indigoviolet penka BioNica stajich pv usagi-kirin tharris skumagai EisenLab Nie Mycology
	Assessing the accuracy of prediction algorithms for classification: an overview [My Copy] Bioinformatics, Vol. 16, No. 5. (May 2000), pp. 412-424. by Pierre Baldi, Soren Brunak, Yves Chauvin, Claus A. Andersen posted to refs_catalytic refs_snps roc by chrn on 2005-12-01 13:47:24 as
	A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. [My Copy] Molecular biology and evolution, Vol. 18, No. 5. (1 May 2001), pp. 691-699. by Simon Whelan, Nick Goldman posted to refs_catalytic refs_snps wag by chrn on 2005-12-01 11:20:16 as along with 7 people calderonv BioNica michaelbarton bpb ssgong gjuggler gisle
	An expectation maximization algorithm for training hidden substitution models. [My Copy] Journal of molecular biology, Vol. 317, No. 5. (12 April 2002), pp. 753-764. by I. Holmes, G. M. Rubin posted to expectation_maximisation refs_snps by chrn on 2005-11-29 17:58:31 as along with 4 people pcarbo bpb nirfriedman wenhan
	Evolutionary trees from DNA sequences: a maximum likelihood approach. [My Copy] Journal of molecular evolution, Vol. 17, No. 6. (1981), pp. 368-376. by J. Felsenstein posted to refs_snps by chrn on 2005-11-29 17:55:20 as along with 10 people and 1 group gjuggler BioNica alexeid bpb kaspermunch dquest djkt timflutre dmc elfar Bioinformatics
	ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information. [My Copy] Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 163-164. by F. Glaser, T. Pupko, I. Paz, et al.R. E. Bell, D. Bechor-Shental, E. Martz, N. Ben-Tal posted to refs_snps software by chrn on 2005-11-29 17:34:54 as along with 4 people and 1 group tomjad oteri bicko siebertm Structural Biology Group TorVergata
	Performance of an iterated T-HMM for homology detection. [My Copy] Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2175-2180. by B. Qian, R. A. Goldstein posted to refs_snps site-specific_evolutionary_models by chrn on 2005-11-29 17:29:24 as
	Depicting a protein's two faces: GPCR classification by phylogenetic tree-based HMMs. [My Copy] FEBS Lett, Vol. 554, No. 1-2. (6 November 2003), pp. 95-99. by B. Qian, O. S. Soyer, R. R. Neubig, R. A. Goldstein posted to refs_snps site-specific_evolutionary_models by chrn on 2005-11-29 17:23:07 as
	Using evolutionary methods to study G-protein coupled receptors. [My Copy] Pac Symp Biocomput (2002), pp. 625-636. by O. Soyer, M. W. Dimmic, R. R. Neubig, R. A. Goldstein posted to g-protein_coupled_receptors refs_snps site-specific_evolutionary_models by chrn on 2005-11-28 13:59:07 as
	Modeling evolution at the protein level using an adjustable amino acid fitness model. [My Copy] Pac Symp Biocomput (2000), pp. 18-29. by M. W. Dimmic, D. P. Mindell, R. A. Goldstein posted to refs_snps site-specific_evolutionary_models by chrn on 2005-11-28 13:46:01 as along with 1 person bpb
	An introduction to computing with neural nets [My Copy] ASSP Magazine, IEEE [see also IEEE Signal Processing Magazine], Vol. 4, No. 2. (1987), pp. 4-22. by R. Lippmann posted to neural_nets refs_snps by chrn on 2005-11-28 11:43:29 as
	Human non-synonymous SNPs: server and survey. [My Copy] Nucleic Acids Res, Vol. 30, No. 17. (1 September 2002), pp. 3894-3900. by V. Ramensky, P. Bork, S. Sunyaev posted to refs_snps snps by chrn on 2005-11-14 17:02:27 as along with 4 people and 1 group daforerog renewang happy_manatee cat_worth structural_bioinformatics
	The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. [My Copy] Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 365-370. by B. Boeckmann, A. Bairoch, R. Apweiler, et al.M. C. Blatter, A. Estreicher, E. Gasteiger, M. J. Martin, K. Michoud, C. O'Donovan, I. Phan, S. Pilbout, M. Schneider posted to refs_snps swiss-prot by chrn on 2005-11-14 15:38:11 as along with 7 people BioNica chad_davis dgront incovoma azazello sgoetz PunkRock
	The Swiss-Prot variant page and the ModSNP database: A resource for sequence and structure information on human protein variants [My Copy] Human Mutation, Vol. 23, No. 5. (19 March 2004), pp. 464-470. by Yum L. Yip, Holger Scheib, Alexander V. Diemand, et al.Alexandre Gattiker, Livia M. Famiglietti, Elisabeth Gasteiger, Amos Bairoch posted to databases refs_snps snps by chrn on 2005-11-14 13:17:40 as
	Context-dependent optimal substitution matrices. [My Copy] Protein Eng, Vol. 8, No. 7. (July 1995), pp. 641-645. by J. M. Koshi, R. A. Goldstein posted to refs_snps site-specific_evolutionary_models by chrn on 2005-11-11 13:50:46 as
	Models of natural mutations including site heterogeneity. [My Copy] Proteins, Vol. 32, No. 3. (15 August 1998), pp. 289-295. by J. M. Koshi, R. A. Goldstein posted to refs_snps site-specific_evolutionary_models by chrn on 2005-11-02 12:54:00 as
	SIFT: predicting amino acid changes that affect protein function [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3812-3814. by P. C. Ng, S. Henikoff posted to refs_snps sift snps software_snps by chrn on 2005-11-02 01:19:32 as along with 3 people and 1 group antonkratz daforerog happy_manatee References for 3DSim paper
	Use of bioinformatics tools for the annotation of disease-associated mutations in animal models. [My Copy] Proteins (5 October 2005) by Carles Ferrer-Costa, Modesto Orozco, Xavier de la Cruz posted to refs_snps by chrn on 2005-10-26 18:03:57 as along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
	An evolution based classifier for prediction of protein interfaces without using protein structures. [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2496-2501. by I. Res, I. Mihalek, O. Lichtarge posted to refs_snps snps by chrn on 2005-09-26 17:09:06 as
	Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information. [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2185-2190. by L. Bao, Y. Cui posted to refs_snps snps software_snps by chrn on 2005-09-26 14:19:21 as along with 4 people and 2 groups bicko caporaso massivemayhem cat_worth structural_bioinformatics biomedical-nlp
	nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by L. Bao, M. Zhou, Y. Cui posted to refs_snps snps software_snps by chrn on 2005-09-26 14:14:55 as
	A comparative study of machine-learning methods to predict the effects of single nucleotide polymorphisms on protein function. [My Copy] Bioinformatics, Vol. 19, No. 17. (22 November 2003), pp. 2199-2209. by V. G. Krishnan, D. R. Westhead posted to machine-learning refs_snps snps by chrn on 2005-09-26 14:11:37 as along with 5 people and 3 groups marcius eweaver caporaso rlhsiao rsantana biomedical-nlp BioinfoCIPF SGU-CIPF
	HOMSTRAD: a database of protein structure alignments for homologous families. [My Copy] Protein Sci, Vol. 7, No. 11. (November 1998), pp. 2469-2471. by K. Mizuguchi, C. M. Deane, T. L. Blundell, J. P. Overington posted to databases homstrad protein_structure refs_catalytic refs_snps by chrn on 2005-08-07 00:25:33 as along with 8 people semin viktor21614 bicko massivemayhem medic0747 cdeane sebk newton1234
	JOY: protein sequence-structure representation and analysis [My Copy] Bioinformatics, Vol. 14, No. 7. (1 August 1998), pp. 617-623. by K. Mizuguchi, C. M. Deane, T. L. Blundell, M. S. Johnson, J. P. Overington posted to joy protein_structure refs_catalytic refs_snps software by chrn on 2005-08-07 00:23:58 as along with 8 people mgomes bicko laurabailey massivemayhem medic0747 cdeane sebk TOchi
	MUSCLE: a multiple sequence alignment method with reduced time and space complexity [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004), 113. by R. C. Edgar posted to muscle refs_catalytic refs_snps software by chrn on 2005-08-07 00:14:02 as along with 29 people and 5 groups rneches gwallau OscarLopez ivanffcc Helenita Joaquin kmma13 khlevy Pal tomjad mgomes hryk BioNica natstreet Md_2007 sebk wallacei knaseanka jwm balajis gbart caporaso sriram_s cdallett sanchezbuelna timflutre gisle urgi Ema LabDros References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp
	The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. [My Copy] Nucleic acids research. , Vol. 33, No. Database issue. (1 January 2005) by F. Pearl, A. Todd, I. Sillitoe, et al.M. Dibley, O. Redfern, T. Lewis, C. Bennett, R. Marsden, A. Grant, D. Lee, A. Akpor, M. Maibaum, A. Harrison, T. Dallman, G. Reeves, I. Diboun, S. Addou, S. Lise, C. Johnston, A. Sillero, J. Thornton, C. Orengo posted to cath databases protein_structure refs_catalytic refs_snps by chrn on 2005-08-06 22:31:51 as along with 4 people and 3 groups sillitoe barry tjimenez alexg Orengo Group Journal Picks structural_bioinformatics Bioinformatics
	Predicting functional sites in proteins: site-specific evolutionary models and their application to neurotransmitter transporters. [My Copy] J Mol Biol, Vol. 339, No. 1. (21 May 2004), pp. 227-242. by O. S. Soyer, R. A. Goldstein posted to functional_sites refs_catalytic refs_snps site-specific_evolutionary_models by chrn on 2005-06-19 02:49:53 as along with 2 people bpb mingzhi
	MrBayes 3: Bayesian phylogenetic inference under mixed models. [My Copy] Bioinformatics, Vol. 19, No. 12. (12 August 2003), pp. 1572-1574. by F. Ronquist, J. P. Huelsenbeck posted to bayesian evolution mrbayes refs_catalytic refs_snps software by chrn on 2005-06-19 00:43:39 as along with 6 people and 1 group aprasad renewang alexeid rvosa spavey AaronDarling FAB-lab

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refs_catalytic	10
snps	8
site-specific_evolutionary_models	7
software	5
databases	3
protein_structure	3
software_snps	3
evolution	2
muscle	2
bayesian	1
cath	1
expectation_maximisation	1
functional_sites	1
g-protein_coupled_receptors	1
homstrad	1
joy	1
machine-learning	1
max_likelihood	1
mrbayes	1
neural_nets	1
paml	1
phylogenetic	1
phyml	1
polymorphisms	1
roc	1
sift	1
structure	1
swiss-prot	1
wag	1

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