Tag regulatory [at least 200 articles] Export

Recent papers classified by the tag regulatory.

	Biocomputational prediction of small non-coding RNAs in Streptomyces [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 217. by Josef Panek, Jan Bobek, Karel Mikulik, Marek Basler, Jiri Vohradsky posted to streptomyces small rna regulatory by jholder on 2009-11-26 18:41:34 as along with 1 person neils
	RNA recognition by the embryonic cell fate determinant and germline totipotency factor MEX-3 [My Copy] Proceedings of the National Academy of Sciences (13 November 2009) by John M. Pagano, Brian M. Farley, Kingsley I. Essien, Sean P. Ryder posted to transcription regulatory_mechanisms regulatory regulation_of_gene_expression mrna motif genome consensus_sequence cinquinproject biology by kmdaily on 2009-11-25 03:23:51 as
	Scoring functions for transcription factor binding site prediction [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 84. by Markus Friberg, Peter von Rohr, Gaston Gonnet posted to regulatory medida binding_sites by Dulce on 2009-11-24 23:14:42 as along with 3 people Baschl smiddha nklee
	Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies1 [My Copy] Journal of Molecular Biology, Vol. 281, No. 5. (04 September 1998), pp. 827-842. by J. van Helden, B. André, J. Collado-Vides posted to regulatory oligonucleotoide by Dulce on 2009-11-20 17:22:05 as along with 6 people wowalz druvus dquest johncumbers smiddha ale
	Unsupervised Learning of Multiple Motifs in Biopolymers Using Expectation Maximization [My Copy] Mach. Learn., Vol. 21, No. 1-2. (1 October 1995), pp. 51-80. by Timothy L. Bailey, Charles Elkan posted to regulatory by Dulce on 2009-11-20 17:05:01 as along with 1 person hendrik85
	Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. [My Copy] Nature biotechnology, Vol. 16, No. 10. (October 1998), pp. 939-945. by F. P. Roth, J. D. Hughes, P. W. Estep, G. M. Church posted to unaligned regulatory by Dulce on 2009-11-20 17:02:07 as along with 4 people and 1 group wowalz dquest kengg isimpson Plantandetc
	WORDUP: an efficient algorithm for discovering statistically significant patterns in DNA sequences [My Copy] Nucl. Acids Res., Vol. 20, No. 11. (11 June 1992), pp. 2871-2875. by Graziano Pesole, Nicola Prunella, Sabino Liuni, Marcella Attimonelli, Cecilia Saccone posted to regulatory by Dulce on 2009-11-20 16:37:31 as along with 1 person wowalz
	Discovery of Regulatory Elements is Improved by a Discriminatory Approach [My Copy] PLoS Comput Biol, Vol. 5, No. 11. (13 November 2009), e1000562. by Eivind Valen, Albin Sandelin, Ole Winther, Anders Krogh posted to regulatory promoter motif element discriminatory classification by ptrobajo on 2009-11-20 14:57:49 as along with 4 people davfre maximilianh TRHvidsten bertelsen
	Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator. [My Copy] Molecular systems biology, Vol. 5 (03 November 2009) by Renata Usaite, Michael C. Jewett, Ana Paula P. Oliveira, John R. Yates, Lisbeth Olsson, Jens Nielsen posted to yeast regulatory network multimodel kinase integration anton-cls by ptrobajo on 2009-11-20 13:49:14 as along with 3 people arne greg pedrobeltrao
	Conservation of DNA Regulatory Motifs and Discovery of New Motifs in Microbial Genomes [My Copy] Genome Research, Vol. 10, No. 6. (1 June 2000), pp. 744-757. by Abigail M. McGuire, Jason D. Hughes, George M. Church posted to regulatory motif by Dulce on 2009-11-10 12:05:30 as along with 2 people and 1 group wowalz adepace EisenLab
	Health research oversight in Africa [My Copy] Acta Tropica, Vol. 112 (19 November 2009), pp. S63-S70. by Ramadhani A. Noor posted to research_ethics regulatory africa by ErinC on 2009-11-03 17:07:59 as along with 1 person ticakim
	Experimental advances in the characterization of metazoan gene regulatory networks [My Copy] Brief Funct Genomic Proteomic, Vol. 8, No. 1. (1 January 2009), pp. 12-27. by Bart Deplancke posted to regulatory networks by cisevol to the group BergmanLab on 2009-11-02 21:41:11 as along with 1 person tmmurali
	Detailing regulatory networks through large scale data integration [My Copy] Bioinformatics (13 October 2009), btp588. by Curtis Huttenhower, K. Tsheko Mutungu, Natasha Indik, et al.Woongcheol Yang, Mark Schroeder, Joshua J. Forman, Olga G. Troyanskaya, Hilary A. Coller posted to regulatory network integration compendium br45 bicluster bayesian by ptrobajo on 2009-11-02 10:19:57 as along with 4 people aaron_webber zufar rdiaz frohike
	A survey of DNA motif finding algorithms. [My Copy] BMC bioinformatics, Vol. 8 Suppl 7, No. Suppl 7. (2007) by Modan K. Das, Ho-Kwok K. Dai posted to regulatory by Dulce on 2009-10-29 16:16:23 as along with 17 people and 2 groups lusk wowalz svenrahmann isimpson daveGerrard coldmeadow druvus Stew emptyhb dquest nklee maximilianh yevishere csdhwang brant xili03 pradiptaray BergmanLab Bioinformatics - CRUK
	STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 332. by Daniel Jupiter, Hailin Chen, Vincent VanBuren posted to wiring regulatory network microarray interaction inference go geo gene enrichment differential correlation comparison by trogdor on 2009-10-16 03:47:33 as along with 5 people and 1 group sillitoe rcr1991 rdiaz druvus torfinnnome Orengo Group Journal Picks
	Backup in gene regulatory networks explains differences between binding and knockout results [My Copy] Molecular Systems Biology, Vol. 5 (16 June 2009) by Anthony Gitter, Zehava Siegfried, Michael Klutstein, et al.Oriol Fornes, Baldo Oliva, Itamar Simon, Ziv Bar-Joseph posted to systems_biology regulatory network by pablocarb on 2009-10-13 21:45:41 as along with 6 people cassj biomcgary roys kiekyon jjray TRHvidsten
	Word-based characterization of promoters involved in human DNA repair pathways [My Copy] BMC Genomics, Vol. 10, No. Suppl 1. (2009), S18. by Jens Lichtenberg, Edwin Jacox, Joshua Welch, et al.Kyle Kurz, Xiaoyu Liang, Mary Yang, Frank Drews, Klaus Ecker, Stephen Lee, Laura Elnitski, Lonnie Welch posted to word_clusters transfac signature regulatory_networks regulatory_factors regulatory_aspects regulatory promoters promoter_sequences promoter_regions pattern motif jaspar human_dna_repair genomic functional_elements dna_sequences dna_repair_pathways dna_repair_genes dna_damage discovery bidirectional by lichtenj on 2009-10-12 13:24:11 as
	The word landscape of the non-coding segments of the Arabidopsis thaliana genome [My Copy] BMC Genomics, Vol. 10, No. 1. (08 October 2009), 463. by Jens Lichtenberg, Alper Yilmaz, Joshua Welch, et al.Kyle Kurz, Xiaoyu Liang, Frank Drews, Klaus Ecker, Stephen Lee, Matt Geisler, Erich Grotewold, Lonnie Welch posted to signature regulatory pattern motif genomic discovery arabidopsis by lichtenj on 2009-10-12 13:22:12 as along with 2 people druvus natstreet
	System-level identification of transcriptional circuits underlying mammalian circadian clocks [My Copy] Nature Genetics, Vol. 37, No. 2. (23 January 2005), pp. 187-192. by Hiroki R. Ueda, Satoko Hayashi, Wenbin Chen, et al.Motoaki Sano, Masayuki Machida, Yasufumi Shigeyoshi, Masamitsu Iino, Seiichi Hashimoto posted to regulatory loops clock circadian by PlagTag on 2009-10-09 16:34:15 as
	Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Raja Jothi, S. Balaji, Arthur Wuster, et al.Joshua A. Grochow, Jorg Gsponer, Teresa M. Przytycka, L. Aravind, Madan M. Babu posted to transcription regulatory network link heirarchy genomic factor dynamics architecture analysis by dswan on 2009-10-09 14:21:25 as along with 12 people ashishanand apocapoc brianb sjcockell zwang fenghezi rdiaz megraw poirel TRHvidsten jjray biomcgary
	Efficient computation of absent words in genomic sequences [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (26 March 2008), 167. by Julia Herold, Stefan Kurtz, Robert Giegerich posted to suffix_trees repeats regulatory motif metrics genomics genome computational bioinformatics algorithms by kmdaily on 2009-10-08 22:51:06 as along with 3 people operon xili03 langmead
	Gene regulatory network inference: Data integration in dynamic models—A review [My Copy] Biosystems, Vol. 96, No. 1. (27 April 2009), pp. 86-103. by Michael Hecker, Sandro Lambeck, Susanne Toepfer, Eugene van Someren, Reinhard Guthke posted to regulatory neworks inference gene by greg on 2009-09-27 21:44:03 as along with 7 people nicholasflann antonkratz guhjy bertelsen mjoach sjung allysonlister
	Regulatory perspective on the importance of ADME assessment of nanoscale material containing drugs☆☆☆ [My Copy] Advanced Drug Delivery Reviews, Vol. 61, No. 6. (21 June 2009), pp. 422-427. by Banu S. Zolnik, Nakissa Sadrieh posted to regulatory_issues regulatory nanoparticles nanomedicine liposome fda drug_delivery by monkare on 2009-09-23 21:34:32 as
	A joint model of regulatory and metabolic networks [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (04 July 2006), 332. by Chen H. Yeang, Martin Vingron posted to regulatory network model metabolic joint by ptrobajo on 2009-09-17 21:26:37 as along with 6 people chasmand cgaugain schwartzjmc alexg cgaray roys
	Factor analysis for gene regulatory networks and transcription factor activity profiles. [My Copy] BMC bioinformatics, Vol. 8 (23 February 2007), 61. by Iosifina Pournara, Lorenz Wernisch posted to transcription regulatory network factor analysis by ptrobajo on 2009-09-17 14:48:56 as along with 9 people bertelsen isimpson akastrin guhjy shigepong lp2 hms kyriakos heliopais
	Transcriptional Regulatory Circuits: Predicting Numbers from Alphabets [My Copy] Science, Vol. 325, No. 5939. (24 July 2009), pp. 429-432. by Harold D. Kim, Tal Shay, Erin K. O'Shea, Aviv Regev posted to transcriptional review regulatory network by ptrobajo on 2009-09-13 21:50:51 as along with 16 people and 1 group pkm rdiaz bborgeson guhjy sergiun emptyhb greg cajunsushi Borelli leliavski TRHvidsten jjray apocapoc fenghezi dswan daforerog Gene Regulation
	Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 49. by Tom Michoel, Riet De Smet, Anagha Joshi, Yves Van de Peer, Kathleen Marchal posted to regulatory network module dragan direct comparative benchmark by ptrobajo on 2009-09-12 21:24:32 as along with 2 people lptolik TRHvidsten
	GeNGe: systematic generation of gene regulatory networks. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 9. (1 May 2009), pp. 1205-1207. by Hendrik Hache, Christoph Wierling, Hans Lehrach, Ralf Herwig posted to regulatory network inference dragan benchmark by ptrobajo on 2009-09-12 21:08:02 as along with 7 people ekotelnikova sotacam reyez tonamswish TRHvidsten rdiaz guhjy
	Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments. [My Copy] Molecular systems biology, Vol. 5 (7 July 2009) by Ewa Szczurek, Irit Gat-Viks, Jerzy Tiuryn, Martin Vingron posted to signaling regulatory pathway experimental design cls-anton by ptrobajo on 2009-09-12 20:59:12 as along with 7 people chasmand reyez mluksza MarcelSchulz abhishek_tiwari mstumpf TRHvidsten
	Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 38. (19 September 2006), pp. 14062-14067. by Su-In Lee, Dana Pe'er, AimÃ©e M. Dudley, George M. Church, Daphne Koller posted to regulatory network module genotype epxression cls-anton by ptrobajo on 2009-09-11 22:29:36 as along with 8 people and 1 group ajbattle biomcgary balajis brant adepace stajich lp2 jasonflannick EisenLab
	Systematic functional characterization of cis-regulatory motifs in human core promoters [My Copy] Genome Research, Vol. 18, No. 3. (6 March 2008), pp. 477-488. by Saurabh Sinha, Adam S. Adler, Yair Field, Howard Y. Chang, Eran Segal posted to microrna regulatory promoter motif geneset cls-anton by ptrobajo on 2009-09-11 22:10:15 as along with 8 people heliopais ealloza lp2 cabbagezs idonaldson emptyhb gracio isimpson
	Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers. [My Copy] BMC genomics, Vol. 10, No. 1. (11 August 2009), 373. by Xinxia Peng, Yu Li, Kathie-Anne A. Walters, et al.Elizabeth R. Rosenzweig, Sharon L. Lederer, Lauri D. Aicher, Sean Proll, Michael G. Katze posted to regulatory mrna module microrna by ptrobajo on 2009-09-11 21:04:53 as along with 4 people and 1 group heliopais guhjy frohike danmaclean microRNA
	From gene expression to gene regulatory networks in Arabidopsis thaliana [My Copy] BMC Systems Biology, Vol. 3, No. 1. (3 September 2009), 85. by Chris Needham, Iain Manfield, Andrew Bulpitt, Philip Gilmartin, David Westhead posted to regulatory network gene compendium bayesian arabidopsis by ptrobajo on 2009-09-11 20:21:51 as along with 9 people idonaldson pengchy Borelli danmaclean TRHvidsten rmk barriot natstreet druvus
	Regulatory B Cells in Autoimmune Diseases [My Copy] Annals of the New York Academy of Sciences, Vol. 1173, No. Contemporary Challenges in Autoimmunity. (2009), pp. 260-267. by Sébastien Lemoine, Ahsen Morva, Pierre Youinou, Christophe Jamin posted to regulatory immunology bcells autimmunity by VGreiff on 2009-09-10 10:36:25 as
	Modelling gene expression data using dynamic Bayesian networks [My Copy] (1999) by Kevin Murphy, Saira Mian posted to regulatory network microarray expression dynamic bayesian by arider1 on 2009-08-27 19:45:38 as along with 2 people wnpx dimatura
	A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data. [My Copy] Bioinformatics, Vol. 21, No. 1. (1 January 2005), pp. 71-79. by M. Zou, S. D. Conzen posted to yeast time-course regulatory network microarray expression dynamic dbn bayesian by arider1 on 2009-08-27 17:13:33 as along with 1 person wnpx
	Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. [My Copy] Nature genetics, Vol. 40, No. 7. (15 July 2008), pp. 854-861. by Jun Zhu, Bin Zhang, Erin N. Smith, et al.Becky Drees, Rachel B. Brem, Leonid Kruglyak, Roger E. Bumgarner, Eric E. Schadt posted to tfbs regulatory ppi network expression causal by arider1 on 2009-08-24 18:56:36 as along with 19 people and 1 group JoeBanks megraw TRHvidsten siebert ggallone jo_davies suteedee burak realzhang kengg maralena ptrobajo tmmurali guhjy roys marck caseybrown djkt srp33 Jarman Lab
	A fast and efficient gene-network reconstruction method from multiple over-expression experiments [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (17 August 2009), 253. by Dejan Stokic, Rudolf Hanel, Stefan Thurner posted to transcriptome regulatory network gene by danmaclean on 2009-08-19 16:22:20 as along with 5 people sotacam rdiaz barriot TRHvidsten fpattyn
	Stressing Out over tRNA Cleavage [My Copy] Vol. 138, No. 2. (23 July 2009), pp. 215-219. by Debrah M. Thompson, Roy Parker posted to trna small rna regulatory by gdb on 2009-08-17 17:09:52 as
	Regulatory Hotspots in the Malaria Parasite Genome Dictate Transcriptional Variation [My Copy] PLoS Biology, Vol. 6, No. 9. (1 September 2008), e238. by Joseph M. Gonzales, Jigar J. Patel, Napawan Ponmee, et al.Lei Jiang, Asako Tan, Steven P. Maher, Stefan Wuchty, Pradipsinh K. Rathod, Michael T. Ferdig posted to transcription regulatory malaria hotspots falciparum eqtl biology by arider1 on 2009-08-13 20:34:57 as along with 3 people semrich caseybrown djkt
	An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules. [My Copy] BMC systems biology, Vol. 3, No. 1. (17 July 2009), 73. by Huaxia Qin, Michael W. Chan, Sandya Liyanarachchi, et al.Curtis Balch, Dustin Potter, Irene J. Souriraj, Alfred S. Cheng, Francisco J. Agosto-Perez, Elena V. Nikonova, Pearlly S. Yan, Huey-Jen J. Lin, Kenneth P. Nephew, Joel H. Saltz, Louise C. Showe, Tim H. Huang, Ramana V. Davuluri posted to chip-on-chip expression gene integrative model molecules profiling regulatory smad by dswan to the group Bioinformatics on 2009-08-11 11:16:39 as along with 1 person guhjy
	Identification of a topological characteristic responsible for the biological robustness of regulatory networks. [My Copy] PLoS computational biology, Vol. 5, No. 7. (24 July 2009), e1000442. by Yangle Wu, Xiaomeng Zhang, Jianglei Yu, Qi Ouyang posted to biology graph graph_theory network networks regulatory robustness topology by winterstream on 2009-08-03 15:32:15 as along with 7 people and 2 groups jjray roys jago phoenixzxl reyez tinatoni TRHvidsten Software-Architecture Integrative Expertise for Global Health
	Regulatory element identification in subsets of transcripts: comparison and integration of current computational methods. [My Copy] RNA (New York, N.Y.), Vol. 15, No. 8. (24 August 2009), pp. 1469-1482. by Danhua Fan, Peter B. Bitterman, Ola Larsson posted to elements regulatory by ppgardne to the group Journal picks on 2009-08-01 21:22:56 as along with 2 people valeriehilgers dandaman
	Inferring the role of transcription factors in regulatory networks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (06 May 2008), 228. by Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel posted to gene inference networks regulation regulatory transcriptional by dolchan on 2009-07-26 05:13:53 as along with 6 people guhjy idonaldson renatomilani heliopais maralena isimpson
	TFIIIC Boxes in the Genome [My Copy] Cell, Vol. 125, No. 5. (02 June 2006), pp. 829-831. by L. Wallrath, P. Geyer posted to biology genome genomics regulatory sandmeyer sandmeyerproject yeast by kmdaily on 2009-07-15 17:31:12 as
	Literature-based priors for gene regulatory networks [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1768-1774. by E. Steele, A. Tucker, P. A. C. 'T Hoen, M. J. Schuemie posted to networks regulatory text_mining by cisevol to the group BergmanLab on 2009-07-06 12:02:15 as along with 6 people lmichan guhjy thegoose TRHvidsten systemsbiology donalddunbar
	Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007), pp. 1640-1647. by Nicola Soranzo, Ginestra Bianconi, Claudio Altafini posted to algorithms gene large-scale network networks regulatory by statnet on 2009-07-04 19:25:17 as along with 5 people ptrobajo fastjoe23 heliopais roys tmmurali
	Reconstructing dynamic regulatory maps [My Copy] Molecular Systems Biology, Vol. 3 (16 January 2007) by Jason Ernst, Oded Vainas, Christopher T. Harbison, Itamar Simon, Ziv Bar-Joseph posted to condition_specific_nw condition_specific_response dynamics regulatory stress by roys on 2009-06-30 06:35:20 as along with 11 people and 1 group beete tienholin antonkratz behindtherabbit okarsligil aswin mikaelhuss SeungjoonOh berthoums natstreet jo_davies Bioinformatics
	Computational methods for the detection of cis-regulatory modules [My Copy] Brief Bioinform, Vol. 10, No. 5. (1 September 2009), pp. 509-524. by Peter Van Loo, Peter Marynen posted to cis module regulatory survey by nklee on 2009-06-26 02:21:14 as along with 5 people and 1 group reyez idonaldson kshameer cisevol druvus BergmanLab
	Transcriptome Analysis of the Circadian Regulatory Network in the Coral Acropora millepora [My Copy] Biol Bull, Vol. 216, No. 2. (1 April 2009), pp. 131-137. by Peter D. Vize posted to circadian coral evolution network regulatory by mhiromi on 2009-06-25 05:27:56 as

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network	130
networks	78
gene	62
transcription	54
expression	38
motif	34
biology	30
evolution	30
bioinformatics	27
yeast	26
genome	24
genomics	24
reconstruction	20
review	19
cns	15
grn	15
metabolic	15
rna	15
computational	13
elements	13
comparative_genomics	12
element	12
microarray	12
ncrna	12
network_motif	12
attractors	11
cis	11
inference	11
module	11
modules	11
tfbs	11
transcriptional	11
bayesian	10
chromatin	10
cis-regulation	10
dynamic	10
regulation	9
signaling	9
association	8
b-cell	8
cell	8
p2p	8
prediction	8
sequence_motif	8
algorithms	7
chip2	7
comparative	7
dynamics	7
factor	7
microrna	7
modeling	7
protein	7
sandmeyer	7
sandmeyerproject	7
bayesian-network	6
biobanks	6
data	6
dna	6
dragan	6
methods	6
projects	6
promoter	6
research	6
research-ethics	6
search	6
systems	6
topology	6
algorithm	5
analysis	5
database	5
enhancer	5
genomic	5
model	5
phenotype	5
signature	5
alignment	4
benchmark	4
bm	4
breg	4
clostridium	4
commericialization	4
conservation	4
discovery	4
encode	4
genetic	4
integration	4
interaction	4
interactions	4
mirna	4
non-coding	4
pattern	4
perfringens	4
rgrg	4
risk	4
senior_care_research	4
skilled_nursing_facility	4
snf	4
toxins	4
trna	4
ty3	4

Tag regulatory [at least 200 articles] Export

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