Tag regulatory_network [94 articles] Export

Recent papers classified by the tag regulatory_network.

	Gene network reconstruction from microarray data [My Copy] BMC Proceedings, Vol. 3, No. Suppl 4. (2009), S12. by Florence Jaffrezic, Gwenola T. Klopp posted to regulatory_network by enelkinsan on 2009-12-04 05:00:53 as along with 1 person ekotelnikova
	DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli. [My Copy] Genome biology, Vol. 10, No. 3. (06 March 2009), R27. by Karen Lemmens, Tijl De Bie, Thomas Dhollander, et al.Sigrid C. De Keersmaecker, Inge M. Thijs, Geert Schoofs, Ami De Weerdt, Bart De Moor, Jos Vanderleyden, Julio Collado-Vides, Kristof Engelen, Kathleen Marchal posted to regulatory_network distiller by enelkinsan on 2009-12-02 08:42:44 as along with 6 people frohike druvus natstreet tvdbulck biomcgary dolchan
	Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations. [My Copy] BMC systems biology, Vol. 3, No. 1. (2009), 39. by Hossein Zare, Dipen Sangurdekar, Poonam Srivastava, Mostafa Kaveh, Arkady Khodursky posted to regulon regulatory_network ecoli by enelkinsan on 2009-12-02 06:50:50 as along with 3 people TRHvidsten barriot trfield
	From elements to modules: regulatory evolution in Ascomycota fungi. [My Copy] Current opinion in genetics & development (28 October 2009) by Dana J. Wohlbach, Dawn Anne A. Thompson, Audrey P. Gasch, Aviv Regev posted to transcription review regulatory_network redundancy module_rewiring module modularity fungi by biomcgary on 2009-11-30 21:40:41 as along with 1 person dbensasson
	ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. [My Copy] BMC Bioinformatics, Vol. 7 Suppl 1 (2006) by A. A. Margolin, I. Nemenman, K. Basso, et al.C. Wiggins, G. Stolovitzky, R. Dalla Favera, A. Califano posted to reverse_engineering_gene_networks regulatory_network mutual_information aracne by frohike on 2009-11-13 12:46:49 as along with 18 people dolchan tonamswish Neeperando akraemer APRegier verdicchio behindtherabbit kaarsinogen mbehbah1 druvus giovenko ptrobajo kentsis tmmurali jfr shigepong natstreet heliopais
	Gene regulatory networks: A coarse-grained, equation-free approach to multiscale computation [My Copy] The Journal of Chemical Physics, Vol. 124, No. 8. (2006), 084106. by Radek Erban, Ioannis G. Kevrekidis, David Adalsteinsson, Timothy C. Elston posted to regulatory_network multiscale gene_expression equation-free by Borelli on 2009-11-11 17:12:17 as along with 1 person nurban
	Combinatorial network of primary and secondary microRNA-driven regulatory mechanisms [My Copy] Nucl. Acids Res., Vol. 37, No. 18. (1 October 2009), pp. 5969-5980. by Kang Tu, Hui Yu, You-Jia Hua, et al.Yuan-Yuan Li, Lei Liu, Lu Xie, Yi-Xue Li posted to transcription_factors regulatory_network hub expression_datasets by aaron_webber on 2009-11-06 16:55:08 as along with 7 people and 1 group fpattyn heliopais tmmurali eshirdel pshuster guhjy valeriehilgers microRNA
	Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator. [My Copy] Molecular systems biology, Vol. 5 (03 November 2009) by Renata Usaite, Michael C. Jewett, Ana Paula P. Oliveira, John R. Yates, Lisbeth Olsson, Jens Nielsen posted to regulatory_network reconstruction protein_expression network expression_levels energy_regulator energy_metabolism data_integration carbon_metabolism ampk by greg on 2009-11-05 09:32:57 as along with 3 people ptrobajo arne pedrobeltrao
	Motif-directed network component analysis for regulatory network inference [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 1. (2008), S21. by Chen Wang, Jianhua Xuan, Li Chen, et al.Po Zhao, Yue Wang, Robert Clarke, Eric Hoffman posted to tf regulatory_network network bioinfo by tonamswish on 2009-11-04 20:12:32 as along with 3 people topsoil roys guhjy
	Sparse essential interactions in model networks of gene regulation [My Copy] (21 Oct 2009) by Z. Burda, A. Krzywicki, O. C. Martin, M. Zagorski posted to regulatory_network by apocapoc on 2009-10-22 13:41:13 as
	Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks [My Copy] Nucl. Acids Res. In Nucl. Acids Res., Vol. 37, No. 11. (1 June 2009), e82. by Federico Colecchia, Denise Kottwitz, Mandy Wagner, et al.Cosima V. Pfenninger, Gerald Thiel, Ingo Tamm, Carsten Peterson, Ulrike A. Nuber posted to transcription_factors transcription_factor_binding_sites software_resource regulatory_network regulatory_factors by sephy on 2009-10-12 14:19:13 as along with 1 person cassj
	Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Raja Jothi, S. Balaji, Arthur Wuster, et al.Joshua A. Grochow, Jorg Gsponer, Teresa M. Przytycka, L. Aravind, Madan M. Babu posted to regulatory_network by apocapoc on 2009-10-09 17:28:28 as along with 12 people ashishanand brianb dswan sjcockell zwang fenghezi rdiaz megraw poirel TRHvidsten jjray biomcgary
	Unbiased Reconstruction of a Mammalian Transcriptional Network Mediating Pathogen Responses [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 257-263. by Ido Amit, Manuel Garber, Nicolas Chevrier, et al.Ana P. Leite, Yoni Donner, Thomas Eisenhaure, Mitchell Guttman, Jennifer K. Grenier, Weibo Li, Or Zuk, Lisa A. Schubert, Brian Birditt, Tal Shay, Alon Goren, Xiaolan Zhang, Zachary Smith, Raquel Deering, Rebecca C. McDonald, Moran Cabili, Bradley E. Bernstein, John L. Rinn, Alex Meissner, David E. Root, Nir Hacohen, Aviv Regev posted to targetted_perturbations regulatory_network by gbloeb on 2009-10-09 03:23:11 as along with 10 people friendpine xianjun inesdesantiago leliavski TRHvidsten agonzale roys ptrobajo natgoodman tmmurali
	Modeling and simulation of genetic regulatory systems: a literature review. [My Copy] J Comput Biol, Vol. 9, No. 1. (January 2002), pp. 67-103. by H. de Jong posted to simulation review regulatory_network gene_expression by Borelli on 2009-10-04 13:58:40 as along with 27 people and 6 groups mjoach qluo antonkratz reyez tlse65 wangbo dlobo jago behindtherabbit cswinburne ggallone softsimu eldan tmmurali bayesian balicea Happybene wnpx kengg noano sstoma josepe dagmar jo_davies roys maburkitt phoenixzxl smac GEB Jarman Lab VirtualPlants Plantandetc compneur
	Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R97. by James Costello, Mehmet Dalkilic, Scott Beason, et al.Jeff Gehlhausen, Rupali Patwardhan, Sumit Middha, Brian Eads, Justen Andrews posted to regulatory_network drosophilia by Borelli on 2009-09-24 10:16:13 as along with 8 people and 2 groups meanerelk abc623 carlk bdessailly sotacam kiekyon druvus daveGerrard Orengo Group Journal Picks BergmanLab
	Beyond Element-Wise Interactions: Identifying Complex Interactions in Biological Processes [My Copy] PLoS ONE, Vol. 4, No. 9. (23 September 2009), e6899. by Christophe Ladroue, Shuixia Guo, Keith Kendrick, Jianfeng Feng posted to regulatory_network networks granger by Borelli on 2009-09-23 14:58:23 as along with 3 people qluo scmelton johnabender
	Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions [My Copy] Genome Biology, Vol. 10, No. 9. (15 September 2009), R96. by Javier Carrera, Guillermo Rodrigo, Alfonso Jaramillo, Santiago Elena posted to regulatory_network arabidopsis by Borelli on 2009-09-23 08:57:03 as along with 5 people megraw TRHvidsten sotacam kiekyon natstreet
	The capacity for multistability in small gene regulatory networks. [My Copy] BMC systems biology, Vol. 3, No. 1. (21 September 2009), 96. by Dan Siegal-Gaskins, Erich Grotewold, Gregory D. Smith posted to regulatory_network by heliopais on 2009-09-22 10:19:26 as along with 1 person dantimatter
	Inferring gene regulatory networks from time series data using the minimum description length principle [My Copy] Bioinformatics, Vol. 22, No. 17. (1 September 2006), pp. 2129-2135. by Wentao Zhao, Erchin Serpedin, Edward R. Dougherty posted to time-series regulatory_network networks by Borelli on 2009-09-17 18:13:38 as
	From gene expression to gene regulatory networks in Arabidopsis thaliana [My Copy] BMC Systems Biology, Vol. 3, No. 1. (3 September 2009), 85. by Chris Needham, Iain Manfield, Andrew Bulpitt, Philip Gilmartin, David Westhead posted to regulatory_network gene_regulatory_networks arabidopsis by Borelli on 2009-09-11 23:07:36 as along with 10 people drmacgregor idonaldson pengchy ptrobajo danmaclean TRHvidsten rmk barriot natstreet druvus
	A reliable measure of similarity based on dependency for short time series: an application to gene expression networks. [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 270. by Monica Campiteli, Frederico Soriani, Iran Malavazi, Osame Kinouchi, Carlos Pereira, Gustavo Goldman posted to time_series systems_biology regulatory_network networks microarray_experiments computational_biology by coffeerv on 2009-09-04 07:14:04 as along with 4 people and 1 group rdiaz TRHvidsten danmaclean sotacam Gene Regulation
	Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 86. by Osnat Atias, Benny Chor, Daniel Chamovitz posted to regulatory_network microarray_experiments arabidopsis_genes by coffeerv on 2009-09-04 07:11:56 as along with 3 people pengchy TRHvidsten rmk
	Incorporating Existing Network Information into Gene Network Inference [My Copy] PLoS ONE, Vol. 4, No. 8. (27 August 2009), e6799. by Scott Christley, Qing Nie, Xiaohui Xie posted to differential-equation regulatory_network priors ode gene_network chip_chip by frohike on 2009-08-27 09:18:03 as along with 5 people rdiaz coffeerv tmmurali TRHvidsten installe
	Functional Anthology of Intrinsic Disorder. 1. Biological Processes and Functions of Proteins with Long Disordered Regions [My Copy] Journal of Proteome Research, Vol. 6, No. 5. (1 May 2007), pp. 1882-1898. by Hongbo Xie, Slobodan Vucetic, Lilia M. Iakoucheva, et al.Christopher J. Oldfield, A. Keith Dunker, Vladimir N. Uversky, Zoran Obradovic posted to regulatory_network protein_intrinsic_disorder metabolism by biomcgary on 2009-08-25 17:59:53 as along with 2 people carlosjavierna higueruelo
	Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 38. (19 September 2006), pp. 14062-14067. by Su-In Lee, Dana Pe'er, AimÃ©e M. Dudley, George M. Church, Daphne Koller posted to yeast variation regulatory_network module gene_expression chromatin by biomcgary on 2009-08-24 22:19:59 as along with 8 people and 1 group ajbattle ptrobajo balajis brant adepace stajich lp2 jasonflannick EisenLab
	Can a biologist fix a radio?--Or, what I learned while studying apoptosis. [My Copy] Cancer cell, Vol. 2, No. 3. (September 2002), pp. 179-182. by Yuri Lazebnik posted to apoptosis biology regulatory_network by Borelli on 2009-08-10 17:39:05 as along with 22 people and 6 groups daforerog cambray arne allysonlister babakap rschulz rklancer dbk irenas manduca monod chihchun_chen massivemayhem gisle Tominator mattjb balicea quianominorleo tvdbulck dbikard leilaperie bayesian streptomyces dbk-lab ComplexAdaptiveSystems DSTO-CAS Centre de Recherches Interdisciplinaires SynBioSys
	Synthetic protein scaffolds provide modular control over metabolic flux [My Copy] Nature Biotechnology, Vol. 27, No. 8. (02 August 2009), pp. 753-759. by John E. Dueber, Gabriel C. Wu, G. Reza Malmirchegini, et al.Tae S. Moon, Christopher J. Petzold, Adeeti V. Ullal, Kristala L. J. Prather, Jay D. Keasling posted to enzyme metabolism modularity module protein-protein_interaction protein_engineering regulatory_network scaffold_protein by biomcgary on 2009-08-07 17:32:12 as along with 6 people abhishek_tiwari dbikard grahamc phoenixzxl kevinchannon jdoconnell
	Reconstruction and Structural Analysis of Metabolic and Regulatory Networks [My Copy] Introduction to Systems Biology (2007), pp. 124-146. by Hong-Wu Ma, Marcio R. Silva, Ji-Bin Sun, Bharani Kumar, An-Ping Zeng posted to network regulatory_network by Borelli on 2009-08-02 12:18:23 as along with 2 people mjoach hryk
	Transcriptional Regulatory Circuits: Predicting Numbers from Alphabets [My Copy] Science In Science, Vol. 325, No. 5939. (24 July 2009), pp. 429-432. by Harold D. Kim, Tal Shay, Erin K. O'Shea, Aviv Regev posted to networks regulatory_network transcription_factor by Borelli on 2009-07-27 09:12:51 as along with 16 people and 1 group pkm ptrobajo rdiaz bborgeson guhjy sergiun emptyhb greg cajunsushi leliavski TRHvidsten jjray apocapoc fenghezi dswan daforerog Gene Regulation
	Fast calculation of pairwise mutual information for gene regulatory network reconstruction. [My Copy] Computer methods and programs in biomedicine, Vol. 94, No. 2. (May 2009), pp. 177-180. by P. Qiu, A. J. Gentles, S. K. Plevritis posted to aracne fast_algorithm mutual_information regulatory_network reverse_engineering_gene_networks by frohike on 2009-04-10 14:25:14 as along with 1 person jfr
	Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell [My Copy] Current Opinion in Cell Biology, Vol. 15, No. 2. (April 2003), pp. 221-231. by J. Tyson posted to modelling regulatory_network review tutorial by Borelli on 2009-03-05 15:24:43 as along with 9 people and 1 group saradtc tomd66 TimRooney Dangerfc joseph_x_zhou dolchan cryptochrome oelemento bayesian bioNetwork_sysBio
	Network motifs: theory and experimental approaches [My Copy] Nature Reviews Genetics, Vol. 8, No. 6. (01 June 2007), pp. 450-461. by Uri Alon posted to regulatory_network sos by cambray on 2009-02-24 16:34:22 as along with 33 people and 4 groups yoshiness Katieleonard nurban mjoach vtraag mlee1 myzhang hkuhn mtagaya dswan renatomilani heliopais snow_dragon druvus pengchy cswinburne dlobo kentz icases aalibes cmmorel jtaylor dbikard margaritis shigepong zwang grinfish Pascalichouchou xingxu karfunkel vietanh0 haarcuba Borelli GEB TNT Centre de Recherches Interdisciplinaires SynBioSys
	Rhythmic binding of a WHITE COLLAR-containing complex to the frequency promoter is inhibited by FREQUENCY [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 10. (13 May 2003), pp. 5914-5919. by Allan C. Froehlich, Jennifer J. Loros, Jay C. Dunlap posted to frequency regulatory_network by Borelli on 2009-02-17 16:59:20 as
	Design of genetic networks with specified functions by evolution in silico [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 2. (13 January 2004), pp. 580-585. by Paul FranÃ§ois, Vincent Hakim posted to evolution regulatory_network synthetic_biology by Borelli on 2009-02-17 16:43:44 as along with 8 people meanerelk rouault rklancer eldan monod dbikard discreteonyxorb mjoach
	Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells [My Copy] BMC Bioinformatics, Vol. 9 (29 September 2008), 404. by Atsushi Niida, Andrew D. Smith, Seiya Imoto, et al.Shuichi Tsutsumi, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama posted to cancer regulatory_network by Borelli on 2009-02-17 10:43:47 as along with 5 people Zephyrus druvus jfr xili03 pengchy
	Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. [My Copy] Genes & development, Vol. 22, No. 18. (15 September 2008), pp. 2550-2563. by C. Zhang, Z. Zhang, J. Castle, et al.S. Sun, J. Johnson, A. R. Krainer, M. Q. Zhang posted to fox regulatory_network by Borelli on 2009-02-17 10:38:22 as along with 2 people roys mbj
	Gene Regulatory Network Interactions in Sea Urchin Endomesoderm Induction [My Copy] PLoS Biology, Vol. 7, No. 2. (1 February 2009), e29. by Aditya J. Sethi, Robert C. Angerer, Lynne M. Angerer posted to endomesoderm gene_expression network regulatory_network sea_urchin by biomcgary on 2009-02-12 23:04:33 as along with 1 person dolchan
	The evolution of genetic networks by non-adaptive processes. [My Copy] Nature reviews. Genetics, Vol. 8, No. 10. (October 2007), pp. 803-813. by Michael Lynch posted to evolution regulatory_network by cambray on 2009-01-28 15:01:44 as along with 14 people and 2 groups operon colmryan dswan brant balicea dchughes aswin stajich margaritis zwang nosada17 Stew lilith lusk G4ID Genetics-of-Gambling
	Inference of gene regulatory networks and compound mode of action from time course gene expression profiles [My Copy] Bioinformatics, Vol. 22, No. 7. (1 April 2006), pp. 815-822. by Mukesh Bansal, Giusy D. Gatta, Diego di Bernardo posted to regulatory_network by Borelli on 2009-01-28 11:44:30 as along with 4 people and 1 group ggallone cswinburne ivokwee tvdbulck Jarman Lab
	How to infer gene networks from expression profiles. [My Copy] Molecular systems biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted to regulatory_network review by Borelli on 2009-01-28 11:35:46 as along with 38 people and 3 groups Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia tmmurali Jarman Lab EBI-regulation Plantandetc
	Re-examining the role and random nature of phase variation. [My Copy] FEMS Microbiol Lett, Vol. 254, No. 2. (January 2006), pp. 190-197. by M. W. van der Woude posted to contingency_loci recombination regulatory_network repeat review stress by cambray on 2009-01-27 15:05:55 as along with 1 person huimin
	Computational discovery of gene modules and regulatory networks [My Copy] Nat Biotech, Vol. 21, No. 11. (12 October 2003), pp. 1337-1342. by Ziv Bar-Joseph, Georg K. Gerber, Tong I. Lee, et al.Nicola J. Rinaldi, Jane Y. Yoo, Francois Robert, D. Benjamin Gordon, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted to gene_regulation regulatory_network by Borelli on 2009-01-22 16:19:33 as along with 17 people and 1 group meanerelk stharward myzhang wangbo ggrot dragonrez bayesian wnpx nickluscombe koller frohike karfunkel roys dquest balicea carlk tvdbulck EBI-regulation
	Dissecting the Genetic Components of Adaptation of Escherichia coli to the Mouse Gut [My Copy] PLoS Genet, Vol. 4, No. 1. (11 January 2008), e2. by Antoine Giraud, Safia Arous, Marianne D. Paepe, et al.Valérie Gaboriau-Routhiau, Jean-Christophe Bambou, Sabine Rakotobe, Ariel B. Lindner, François Taddei, Nadine Cerf-Bensussan posted to adaptation regulation regulatory_network by cambray on 2009-01-21 22:23:46 as along with 1 person yyfwuhan
	The evolution of hierarchical gene regulatory networks [My Copy] Nat Rev Genet, Vol. 10, No. 2. (February 2009), pp. 141-148. by Douglas H. Erwin, Eric H. Davidson posted to evolution regulatory_network by Borelli on 2009-01-16 16:44:39 as along with 10 people PabloMarin Scis0000002 erel10 ynaito dakelley wangbo natstreet druvus balicea balabu
	The gene regulatory logic of transcription factor evolution. [My Copy] Trends in ecology & evolution (Personal edition) (21 May 2008) by Günter P P. Wagner, Vincent J J. Lynch posted to evolution regulation regulatory_network review by cambray on 2009-01-15 09:24:02 as along with 5 people bmajoros maximilianh Stew Garamonfok bpcusack
	Frequency-modulated nuclear localization bursts coordinate gene regulation. [My Copy] Nature, Vol. 455, No. 7212. (25 September 2008), pp. 485-490. by Long Cai, Chiraj K. Dalal, Michael B. Elowitz posted to dynamics regulatory_network by dpollard to the group RockmanLab on 2009-01-14 16:25:26 as along with 8 people bertelsen ellarond siebert erel10 inesdesantiago raik caseybrown jjray
	Evolution: Yeast rewired [My Copy] Nature, Vol. 456, No. 7224. (18 December 2008), pp. 842-842. posted to regulatory_evolution regulatory_network yeast by dpollard to the group RockmanLab on 2009-01-14 16:05:33 as along with 1 group cis-regulatory-evolution
	Post-translational regulation of plant bZIP factors. [My Copy] Trends in plant science (16 April 2008) by Katia Schütze, Klaus Harter, Christina Chaban posted to bzip leucine_zipper plants post-translational regulation regulatory_network transcription transcription_factor by yarikson on 2008-12-19 16:27:54 as along with 1 person imtechnology
	GeBP and GeBP-Like Proteins Are Noncanonical Leucine-Zipper Transcription Factors That Regulate Cytokinin Response in Arabidopsis [My Copy] Plant Physiol., Vol. 146, No. 3. (1 March 2008), pp. 1142-1154. by Florian Chevalier, Daniel Perazza, Frederic Laporte, et al.Gaelle Le Henanff, Patricia Hornitschek, Jean-Marc Bonneville, Michel Herzog, Gilles Vachon posted to arabidopsis leucine_zipper noncanonical plants regulatory_network signaling_network by yarikson on 2008-12-19 16:01:41 as
	Using Engineered Scaffold Interactions to Reshape MAP Kinase Pathway Signaling Dynamics [My Copy] Science, Vol. 319, No. 5869. (14 March 2008), pp. 1539-1543. by Caleb J. Bashor, Noah C. Helman, Shude Yan, Wendell A. Lim posted to leucine_zipper protein_design protein_engineering regulatory_network signaling_network by yarikson on 2008-12-19 14:31:57 as along with 6 people kgutwin jsaucerman reidw lisa1 biomcgary melting

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stochastic	16
systems_biology	13
evolution	11
review	11
networks	10
yeast	10
gene_expression	9
bayesian_network	7
genetic_network	6
mutiplicative_noise	6
graphical_models	5
machine_learning	5
microarray	5
network	5
structure_learning	5
transcription_factor	5
arabidopsis	4
leucine_zipper	4
modeling	4
regulation	4
transcription	4
bayesian	3
chip_chip	3
dynamics	3
modularity	3
module	3
plants	3
regulatory_evolution	3
signaling_network	3
transcription_factors	3
analysis	2
aracne	2
bifurcation	2
biology	2
cis-regulation	2
computational	2
data_integration	2
delay	2
development	2
distiller	2
drosophila	2
embryonic_patterning	2
experimental	2
expression_datasets	2
grn	2
hub	2
metabolism	2
method	2
microarray_experiments	2
modelling	2
mutual_information	2
protein_engineering	2
reverse_engineering_gene_networks	2
signaling	2
text_mining	2
tool	2
arabidopsis_genes	1
association_rule_mining	1
athaliana	1
bioinfo	1
bzip	1
carbon_metabolism	1
chip	1
chromatin	1
coarse_grained	1
contingency_loci	1
differential-equation	1
e_coli	1
ecoli	1
energy_metabolism	1
energy_regulator	1
eqtl	1
equation-free	1
expression_levels	1
fast_algorithm	1
fluctuations	1
fokker_planck	1
fox	1
fungi	1
gene_network	1
gene_regulation	1
granger	1
pathway	1
potential	1
priors	1
protein	1
protein_design	1
protein_expression	1
protein_network	1
quantitative_modeling	1
recombination	1
regulon	1
sde	1
sea_urchin	1
simulation	1
software_resource	1
stress	1
tf	1
tutorial	1
vaccines	1

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