Tag repeat [at least 200 articles] Export

Recent papers classified by the tag repeat.

	Multilocus variable number tandem repeat analysis and multilocus sequence typing reveal genetic relationships among Clostridium difficile isolates genotyped by restriction endonuclease analysis [My Copy] In J. Clin. Microbiol. (2 December 2009), JCM.01315-09. by Jane W. Marsh, Mary M. O'Leary, Kathleen A. Shutt, et al.Susan P. Sambol, Stuart Johnson, Dale N. Gerding, Lee H. Harrison posted to variable typing tandem sequence restriction repeat relationships number multilocus genetic endonuclease difficile clostridium analysis by Winzer on 2009-12-03 16:46:22 as
	Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey [My Copy] BMC Genomics, Vol. 8, No. 1. (24 May 2007), 132. by Kankshita Swaminathan, Kranthi Varala, Matthew Hudson posted to variant resequencing repeat cnv 454 by n00c on 2009-12-02 17:55:33 as along with 6 people and 2 groups orzenil floatingpoint ghattem GustavoLacerda tpreeprem bozdagd BergmanLab gatech-compgenomics
	Automated paleontology of repetitive DNA with REANNOTATE [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 614. by Vini Pereira posted to repeat by natstreet on 2009-11-30 14:07:22 as along with 3 people timflutre LHON druvus
	A novel approach to the detection of genomic approximate tandem repeats in the Levenshtein metric. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 14, No. 7. (September 2007), pp. 873-891. by Nevzat Onur O. Domaniç, Franco P. Preparata posted to transposon repeat evolution by operon on 2009-11-28 14:16:31 as along with 1 person druvus
	3'UTR-located ALU Elements: Donors of Potetial miRNA Target Sites and Mediators of Network miRNA-based Regulatory Interactions. [My Copy] Evolutionary bioinformatics online, Vol. 2 (2006), pp. 103-120. by Evelina Daskalova, Vesselin Baev, Ventsislav Rusinov, Ivan Minkov posted to repeat microrna alu_sequences by tonamswish to the group microRNA on 2009-11-22 16:00:16 as
	A Family of Human MicroRNA Genes from Miniature Inverted-Repeat Transposable Elements [My Copy] PLoS ONE, Vol. 2, No. 2. (2007), e203. by Jittima Piriyapongsa, I. King Jordan posted to transposon repeat microrna by tonamswish on 2009-11-22 15:57:33 as along with 2 people and 1 group andersbj mtagaya microRNA
	Origin and Evolution of Human microRNAs From Transposable Elements [My Copy] Genetics, Vol. 176, No. 2. (1 June 2007), pp. 1323-1337. by Jittima Piriyapongsa, Leonardo Marino-Ramirez, I. King Jordan posted to transposon repeat microrna by tonamswish on 2009-11-22 15:56:14 as along with 9 people and 5 groups daforerog coldmeadow gpappas tardigrade andersbj dchughes mtagaya cisevol emptyhb microRNA G4ID Genetics-of-Gambling cis-regulatory-evolution BergmanLab
	Metatranscriptomics reveals unique microbial small RNAs in the ocean\|[rsquo]\|s water column [My Copy] Nature, Vol. 459, No. 7244. (14 May 2009), pp. 266-269. by Yanmei Shi, Gene W. Tyson, Edward F. DeLong posted to repeat ncrna metatranscriptomics by tonamswish on 2009-11-22 15:54:53 as along with 13 people and 4 groups kinestetika gdb michaelbarton samgj vaulot Katje absterga jmeppley Thaverkamp pengchy djkt skembel jbhiatt Papers recommended by the Roscoff Plankton Group Microbial-Ecology microbiology_nijmegen iSEEM
	Adplot: detection and visualization of repetitive patterns in complete genomes [My Copy] Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 701-708. by Akito Taneda posted to transposon repeat evolution annotation by operon on 2009-11-16 23:16:49 as along with 1 person GustavoLacerda
	Repbase Update, a database of eukaryotic repetitive elements. [My Copy] Cytogenetic and genome research, Vol. 110, No. 1-4. (2005), pp. 462-467. by J. Jurka, V. V. Kapitonov, A. Pavlicek, P. Klonowski, O. Kohany, J. Walichiewicz posted to transposable_elements repeat masking censor by gwallau on 2009-11-15 21:45:55 as along with 6 people natstreet AaronDarling timflutre nume urgi yoanjacquemin
	PLOTREP: a web tool for defragmentation and visual analysis of dispersed genomic repeats [My Copy] Nucl. Acids Res., Vol. 34, No. suppl_2. (1 July 2006), pp. W708-713. by Gabor Toth, Gabor Deak, Endre Barta, Gyorgy B. Kiss posted to repeat by GustavoLacerda on 2009-11-13 22:19:51 as along with 1 person operon
	p53 responsive elements in human retrotransposons [My Copy] Oncogene, Vol. 28, No. 44. (31 August 2009), pp. 3857-3865. by C. R. Harris, A. DeWan, A. Zupnick, et al.R. Normart, A. Gabriel, C. Prives, A. J. Levine, J. Hoh posted to retrotransposon repetitive_elements repeat p53 line by tonamswish on 2009-11-05 14:00:17 as
	ReAS: Recovery of Ancestral Sequences for Transposable Elements from the Unassembled Reads of a Whole Genome Shotgun [My Copy] PLoS Comput Biol, Vol. 1, No. 4. (23 September 2005), e43. by Ruiqiang Li, Jia Ye, Songgang Li, et al.Jing Wang, Yujun Han, Chen Ye, Jian Wang, Huanming Yang, Jun Yu, Gane K. Wong, Jun Wang posted to repeat de-novo by natstreet on 2009-11-02 16:41:00 as along with 3 people operon timflutre yoanjacquemin
	Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats [My Copy] BMC Genomics, Vol. 9, No. 1. (31 October 2008), 518. by Thomas Wicker, Apurva Narechania, Francois Sabot, et al.Joshua Stein, Giang Vu, Andreas Graner, Doreen Ware, Nils Stein posted to transposon repeat genomic evolution annotation by operon on 2009-10-26 19:13:34 as along with 5 people orzenil timflutre usagi-kirin natstreet abizar
	Genome-wide screening and characterization of transposable elements and their distribution analysis in the silkworm, Bombyx mori [My Copy] Insect Biochemistry and Molecular Biology, Vol. 38, No. 12. (December 2008), pp. 1046-1057. by Mizuko Osanai-Futahashi, Yoshitaka Suetsugu, Kazuei Mita, Haruhiko Fujiwara posted to transposon repeat evolution annotation by operon on 2009-10-26 19:13:13 as
	T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2632-2638. by Julien Jorda, Andrey V. Kajava posted to repeat by natstreet on 2009-10-09 08:47:27 as along with 4 people and 1 group jforment reyez n00c robfsouza Bioinformatics Core Service
	Exploring the folding energy landscape of a series of designed consensus tetratricopeptide repeat proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 41. (13 October 2009), pp. 17383-17388. by Yalda Javadi, Ewan R. G. Main posted to tpr tetratricopeptide structure repeat protein kinetics folding by pansapiens on 2009-10-08 06:52:09 as along with 1 person carlosjavierna
	The highest-copy repeats are methylated in the small genome of the early divergent vascular plant Selaginella moellendorffii. [My Copy] BMC genomics, Vol. 9 (12 June 2008), 282. by Agnes P. Chan, Admasu Melake-Berhan, Kimberly O'Brien, et al.Stephanie Buckley, Hui Quan, Dan Chen, Matthew Lewis, Jo Ann A. Banks, Pablo D. Rabinowicz posted to transposons selaginella repeat genome by dandaman on 2009-10-01 07:18:35 as
	Extensive Structural Renovation of Retrogenes in the Evolution of the Populus Genome [My Copy] Plant Physiol. (29 September 2009), pp.109.142984. by Zhenglin Zhu, Yong Zhang, Manyuan Long posted to transponson sex repeat poplar by natstreet on 2009-09-30 20:07:22 as along with 1 person druvus
	Finishing Repetitive Regions Automatically with Dupfinisher [My Copy] by Cliff S. Han, Patrick Chain posted to resequencing repeat ngs by natstreet on 2009-09-26 14:04:52 as along with 1 person druvus
	Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes [My Copy] Genome Biol Evol, Vol. 2009, No. 0. (12 August 2009), pp. 205-220. by Cedric Feschotte, Umeshkumar Keswani, Nirmal Ranganathan, Marcel L. Guibotsy, David Levine posted to repeat by natstreet on 2009-09-03 07:38:47 as along with 1 person operon
	A Genetic Defect Caused by a Triplet Repeat Expansion in Arabidopsis thaliana [My Copy] Science, Vol. 323, No. 5917. (20 February 2009), pp. 1060-1063. by Sridevi Sureshkumar, Marco Todesco, Korbinian Schneeberger, Ramya Harilal, Sureshkumar Balasubramanian, Detlef Weigel posted to repeat by natstreet on 2009-08-26 13:49:13 as
	Molecular cloning, genomic organization, developmental regulation, and a knock-out mutant of a novel leu-rich repeats-containing G protein-coupled receptor (DLGR-2) from Drosophila melanogaster. [My Copy] Genome research, Vol. 10, No. 7. (July 2000), pp. 924-938. by K. K. Eriksen, F. Hauser, M. Schiøtt, K. M. Pedersen, L. Søndergaard, C. J. Grimmelikhuijzen posted to rich repeat leucine gpcr drosophile by LaetitiaBigot on 2009-08-25 15:57:00 as
	DXZ4 chromatin adopts an opposing conformation to that of the surrounding chromosome and acquires a novel inactive X-specific role involving CTCF and antisense transcripts. [My Copy] Genome research, Vol. 18, No. 8. (August 2008), pp. 1259-1269. by Brian P. Chadwick posted to xci x-chromosome repeat methylation macrosatellite inactivation heterochromatin euchromatin dxz4 ctcf cpg-methylation cpg by sebastien_vigneau to the group X-chromosome inactivation on 2009-08-18 16:27:27 as along with 1 group CTCF
	Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa [My Copy] Genome Research, Vol. 19, No. 3. (17 March 2009), pp. 427-437. by Zachary A. Lewis, Shinji Honda, Tamir K. Khlafallah, et al.Jennifer K. Jeffress, Michael Freitag, Fabio Mohn, Dirk Schübeler, Eric U. Selker posted to fungi repeat rip by GustavoLacerda on 2009-08-10 00:37:25 as along with 2 people and 1 group stajich rjlawren Mycology
	Repetitive DNA elements, nucleosome binding and human gene expression. [My Copy] Gene, Vol. 436, No. 1-2. (1 May 2009), pp. 12-22. by Ahsan Huda, Leonardo Mariño-Ramírez, David Landsman, I. King Jordan posted to repeat by guhjy on 2009-08-03 16:38:40 as along with 1 person daforerog
	Global analysis of DNA methylation and transcription of human repetitive sequences. [My Copy] Epigenetics : official journal of the DNA Methylation Society, Vol. 4, No. 5. (17 July 2009), pp. 339-350. by Béatrice Horard, Angéline Eymery, Geneviève Fourel, et al.Nikita Vassetzky, Jacques Puechberty, Gérard Roizes, Kevin Lebrigand, Pascal Barbry, Aurélie Laugraud, Christian Gautier, Elsa Ben B. Simon, Frédéric Devaux, Frédérique Magdinier, Claire Vourc'h, Eric Gilson posted to ma repeat by guhjy on 2009-08-01 05:48:58 as along with 2 people inesdesantiago rschulz
	Cloning and characterization of phosphorus starvation inducible Brassica napusPURPLE ACID PHOSPHATASE12 gene family, and imprinting of a recently evolved MITE-minisatellite twin structure [My Copy] TAG Theoretical and Applied Genetics, Vol. 117, No. 6. (1 October 2008), pp. 963-975. by Kun Lu, You-Rong Chai, Kai Zhang, et al.Rui Wang, Li Chen, Bo Lei, Jun Lu, Xin-Fu Xu, Jia-Na Li posted to brassica mite napus repeat by ArtemPankin to the group Khavkin's lab on 2009-07-31 16:55:02 as
	The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D360-363. by Shu Ouyang, C. Robin Buell posted to potato repeat solanaceae by orzenil on 2009-07-25 02:14:59 as
	A whole-genome snapshot of 454 sequences exposes the composition of the barley genome and provides evidence for parallel evolution of genome size in wheat and barley [My Copy] The Plant Journal, Vol. 9999, No. 9999. (2009) by Thomas Wicker, Stefan Taudien, Andreas Houben, et al.Beat Keller, Andreas Graner, Matthias Platzer, Nils Stein posted to 454 repeat transposon by orzenil on 2009-07-24 03:08:47 as along with 1 person soberhaensli
	A statistical approach designed for finding mathematically defined repeats in shotgun data and determining the length distribution of clone-inserts. [My Copy] Genomics, proteomics & bioinformatics / Beijing Genomics Institute, Vol. 1, No. 1. (February 2003), pp. 43-51. by L. Zhong, K. Zhang, X. Huang, et al.P. Ni, Y. Han, K. Wang, J. Wang, S. Li posted to mdr repeat statistics by orzenil on 2009-07-24 03:06:32 as
	RePS: a sequence assembler that masks exact repeats identified from the shotgun data. [My Copy] Genome research, Vol. 12, No. 5. (1 May 2002), pp. 824-831. by Jun Wang, Gane Ka-Shu K. Wong, Peixiang Ni, et al.Yujun Han, Xiangang Huang, Jianguo Zhang, Chen Ye, Yong Zhang, Jianfei Hu, Kunlin Zhang, Xin Xu, Lijuan Cong, Hong Lu, Xide Ren, Xiaoyu Ren, Jun He, Lin Tao, Douglas A. Passey, Jian Wang, Huanming Yang, Jun Yu, Songgang Li posted to assembly mdr repeat statistics by orzenil on 2009-07-24 03:05:26 as along with 3 people natstreet seb1 n00c
	t2prhd: a tool to study the patterns of repeat evolution [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Botond Sipos, Kalman Somogyi, Istvan Ando, Zsolt Penzes posted to repeat by orzenil on 2009-07-23 19:33:49 as along with 2 people and 1 group stajich RamuAnandakrishnan Mycology
	Patterns of tandem repetition in plant whole genome assemblies [My Copy] Molecular Genetics and Genomics, Vol. 281, No. 6. (1 June 2009), pp. 579-590. by Rafael Navajas-Pérez, Andrew Paterson posted to plant repeat tandem by druvus on 2009-07-23 10:11:58 as along with 1 person natstreet
	De novo identification of repeat families in large genomes. [My Copy] Bioinformatics (Oxford, England), Vol. 21 Suppl 1, No. suppl_1. (1 June 2005), pp. i351-358. by Alkes L. Price, Neil C. Jones, Pavel A. Pevzner posted to repeat software by sujaikumar on 2009-07-22 16:56:16 as along with 8 people isimpson natstreet treangen druvus aprasad hoangmit timflutre urgi
	Plant LTR-retrotransposons and MITEs: control of transposition and impact on the evolution of plant genes and genomes [My Copy] Gene, Vol. 311 (05 June 2003), pp. 1-11. by J. Casacuberta posted to repeat by natstreet on 2009-07-22 15:56:29 as
	Cytogenetic analysis of Populus trichocarpa--ribosomal DNA, telomere repeat sequence, and marker-selected BACs. [My Copy] Cytogenetic and genome research, Vol. 125, No. 1. (2009), pp. 74-80. by M. N. Islam-Faridi, C. D. Nelson, S. P. DiFazio, L. E. Gunter, G. A. Tuskan posted to poplar repeat by natstreet on 2009-07-22 13:55:20 as
	Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability [My Copy] Science (New York, N.Y.) In Science, Vol. 324, No. 5931. (29 May 2009), pp. 1213-1216. by Marcelo D. Vinces, Matthieu Legendre, Marina Caldara, Masaki Hagihara, Kevin J. Verstrepen posted to repeat tandem by orzenil on 2009-07-21 17:03:02 as along with 15 people and 1 group n00c xianjun absterga gjuggler bpcusack pkonings cisevol fenghezi cambray APRegier antonkratz JustinCrocker scjparker leliavski jjray cis-regulatory-evolution
	The mariner Transposons Belonging to the irritans Subfamily Were Maintained in Chordate Genomes by Vertical Transmission [My Copy] Journal of Molecular Evolution, Vol. 62, No. 1. (1 January 2006), pp. 53-65. by Ludivine Sinzelle, Albert Chesneau, Yves Bigot, André Mazabraud, Nicolas Pollet posted to amphibian dna phylogeny repeat transposase by gwallau on 2009-07-14 21:08:04 as
	Mariner -like elements in Rhynchosciara americana (Sciaridae) genome: molecular and cytological aspects [My Copy] Genetica, Vol. 133, No. 2. (1 June 2008), pp. 137-145. by Paula Rezende-Teixeira, Fábio Siviero, Alexandre Andrade, Roberto Santelli, Gláucia Machado-Santelli posted to chromosome inverted itr mariner-like polytene repeat rhynchosciara sciaridae terminal transposase transposon transposable_elements by gwallau on 2009-07-14 16:19:07 as
	Automated De Novo Identification of Repeat Sequence Families in Sequenced Genomes [My Copy] Genome Research, Vol. 12, No. 8. (1 August 2002), pp. 1269-1276. by Zhirong Bao, Sean R. Eddy posted to recon repeat transposon by orzenil on 2009-07-13 01:55:59 as along with 9 people operon natstreet druvus aprasad timflutre Jporci urgi yoanjacquemin Neeperando
	Integration of the cytogenetic map with the draft human genome sequence. [My Copy] Human molecular genetics, Vol. 12, No. 9. (1 May 2003), pp. 1037-1044. by T. S. Furey, D. Haussler posted to cg cytogenetics g-banding gc line repeat sine by sebastien_vigneau on 2009-07-08 16:17:58 as along with 1 person and 2 groups cisevol JLab BergmanLab
	Evolution of the mammalian transcription factor binding repertoire via transposable elements [My Copy] Genome Research, Vol. 18, No. 11. (5 November 2008), pp. 1752-1762. by Guillaume Bourque, Bernard Leong, Vinsensius B. Vega, et al.Xi Chen, Yen L. Lee, Kandhadayar G. Srinivasan, Joon-Lin Chew, Yijun Ruan, Chia-Lin Wei, Huck H. Ng, Edison T. Liu posted to binding factor repeat sequence short transcription transposon upstream by mhiromi on 2009-07-07 09:29:32 as along with 3 people and 2 groups operon maximilianh cisevol cis-regulatory-evolution BergmanLab
	Efficient computation of all perfect repeats in genomic sequences of up to half a gigabyte, with a case study on the human genome [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1746-1753. by Veronica Becher, Alejandro Deymonnaz, Pablo Heiber posted to repeat suffix_tree by orzenil on 2009-07-05 21:09:53 as along with 2 people operon hdopazo
	An adaptive hybrid FEC/ARQ protocol using turbo codes [My Copy] Universal Personal Communications Record, 1997. Conference Record., 1997 IEEE 6th International Conference on In Universal Personal Communications Record, 1997. Conference Record., 1997 IEEE 6th International Conference on, Vol. 2 (1997), pp. 541-545 vol.2. by Wai-Chung Chan, E. Geraniotis, V. D. Nguyen posted to adaptive arq automatic code correction error fec forward hybrid repeat request turbo by hgfernan on 2009-07-02 02:23:03 as
	Hybrid ARQ for IP packet transmission [My Copy] Universal Personal Communications Record, 1997. Conference Record., 1997 IEEE 6th International Conference on In Universal Personal Communications Record, 1997. Conference Record., 1997 IEEE 6th International Conference on, Vol. 2 (1997), pp. 531-535 vol.2. by A. R. Prasad, K. Seki posted to arq automatic hybrid packet query repeat request tranmission transmission by hgfernan on 2009-07-02 02:20:23 as
	Repeat-until-success quantum computing using stationary and flying qubits [My Copy] Physical Review A, Vol. 73, No. 1. (January 2006), pp. 012304-012304. by Yuan L. Lim, Sean D. Barrett, Almut Beige, Pieter Kok, Leong C. Kwek posted to almut repeat by MarkEveritt on 2009-06-23 15:53:24 as
	A repeat-until-success quantum computing scheme [My Copy] New Journal of Physics, Vol. 9, No. 6. (29 June 2007), pp. 197-197. by A. Beige, Y. L. Lim, L. C. Kwek posted to almut repeat by MarkEveritt on 2009-06-23 15:51:42 as
	CTCF-binding sites flank CTG/CAG repeats and form a methylation-sensitive insulator at the DM1 locus. [My Copy] Nature genetics, Vol. 28, No. 4. (August 2001), pp. 335-343. by G. N. Filippova, C. P. Thienes, B. H. Penn, et al.D. H. Cho, Y. J. Hu, J. M. Moore, T. R. Klesert, V. V. Lobanenkov, S. J. Tapscott posted to cag ctcf ctg dm1 repeat by sebastien_vigneau to the group CTCF on 2009-06-23 00:45:17 as
	The transposon Tn9 generates a 9 bp repeated sequence during integration. [My Copy] Cell, Vol. 15, No. 4. (December 1978), pp. 1209-1219. by L. Johnsrud, M. P. Calos, J. H. Miller posted to 9bp duplication repeat site target tn9 by katholt on 2009-06-21 14:31:25 as

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tandem	118
software	37
statistics	30
evolution	27
transposon	26
genome	21
marker	21
human	17
sequence	16
distance	13
model	13
review	13
microrna	12
alu	11
mirna	11
ncrna	11
vntr	11
mutation	10
epigenetics	9
population	9
contingency_loci	8
darpins	8
imprinting	8
methylation	8
phylogeny	8
retrotransposon	8
ankyrin	7
annotation	7
cag	7
algorithm	6
ctcf	6
ssr	6
transcription	6
analysis	5
cpg	5
detection	5
rasirna	5
selection	5
ctg	4
database	4
heterochromatin	4
inactivation	4
indel	4
mycobacterium	4
number	4
sirna	4
x-chromosome	4
affinity	3
assembly	3
bacteria	3
binding	3
bioinformatics	3
cpg-methylation	3
dm1	3
dna	3
dna-methylation	3
dxz4	3
euchromatin	3
feature	3
genetic	3
genetics	3
homoplasy	3
host-defense	3
line	3
macrosatellite	3
platypus	3
promoter	3
protein	3
proteins	3
recombination	3
ribosome	3
rrna	3
simulation	3
structure	3
target	3
xci	3
array	2
carcinogenesis	2
clostridium	2
cluster	2
de-novo	2
deletion	2
difficile	2
disease	2
expansion	2
indexes	2
length	2
lii	2
mite	2
mouse	2
multilocus	2
piwi	2
prices	2
relationships	2
repetitive	2
repetitive_dna	2
resequencing	2
restriction	2
sine	2
transposons	2

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