Tag resequencing [108 articles] Export

Recent papers classified by the tag resequencing.

	Next generation sequence analysis for mitochondrial disorders. [My Copy] Genome medicine, Vol. 1, No. 10. (23 October 2009) by Valeria Vasta, Sarah B. Ng, Emily H. Turner, Jay Shendure, Si Houn H. Hahn posted to variant snp resequencing mitochondria disease database by n00c on 2009-12-04 18:03:13 as along with 1 person pst
	Exome sequencing identifies the cause of a mendelian disorder [My Copy] Nature Genetics In Nat Genet, Vol. advance online publication (13 November 2009) by Sarah B. Ng, Kati J. Buckingham, Choli Lee, et al.Abigail W. Bigham, Holly K. Tabor, Karin M. Dent, Chad D. Huff, Paul T. Shannon, Ethylin W. Jabs, Deborah A. Nickerson, Jay Shendure, Michael J. Bamshad posted to solexa resequencing illumina exome enrichment disease capture agilent by n00c on 2009-12-04 17:51:46 as along with 6 people cajunsushi pst seb1 daforerog Peiyong psique
	Genetic diagnosis by whole exome capture and massively parallel DNA sequencing [My Copy] Proceedings of the National Academy of Sciences of the United States of America In Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 19096-19101. by Murim Choi, Ute I. Scholl, Weizhen Ji, et al.Tiewen Liu, Irina R. Tikhonova, Paul Zumbo, Ahmet Nayir, AyÈin BakkaloÄlu, Seza Ãzen, Sami Sanjad, Carol Nelson-Williams, Anita Farhi, Shrikant Mane, Richard P. Lifton posted to resequencing enrichment diagnostics capture by n00c on 2009-12-04 17:35:33 as along with 6 people daforerog liqbbi pst Peiyong chvlyl giovanni
	Massively parallel exon capture and library-free resequencing across 16 genomes [My Copy] Nature Methods In Nat Meth, Vol. 6, No. 5. (06 April 2009), pp. 315-316. by Emily H. Turner, Choli Lee, Sarah B. Ng, Deborah A. Nickerson, Jay Shendure posted to resequencing exon-capture enrichment capture by n00c on 2009-12-03 13:54:20 as along with 7 people and 1 group xingxu torfinnnome jandot fenghezi guhjy jdbowes sleepingcell Journal picks
	Genome resequencing and genetic variation [My Copy] Nature Biotechnology In Nat Biotech, Vol. 26, No. 1. (01 January 2008), pp. 65-66. by Michael Stratton posted to variation review resequencing genome enrichment by n00c on 2009-12-03 13:43:15 as along with 6 people and 1 group MarkFiers orzenil Ayest natstreet druvus psique parkinson's disease references
	Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey [My Copy] BMC Genomics, Vol. 8, No. 1. (24 May 2007), 132. by Kankshita Swaminathan, Kranthi Varala, Matthew Hudson posted to variant resequencing repeat cnv 454 by n00c on 2009-12-02 17:55:33 as along with 6 people and 2 groups orzenil floatingpoint ghattem GustavoLacerda tpreeprem bozdagd BergmanLab gatech-compgenomics
	Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (10 July 2009), e1000432. by Jiang Du, Robert D. Bjornson, Zhengdong D. Zhang, Yong Kong, Michael Snyder, Mark B. Gerstein posted to sv resequencing personal-genomics by n00c on 2009-12-01 13:42:56 as along with 7 people tharris operon nuin natstreet rdiaz dakelley guhjy
	Detection of Genomic Variation by Selection of a 9 Mb DNA Region and High Throughput Sequencing [My Copy] PLoS ONE, Vol. 4, No. 8. (17 August 2009), e6659. by Sergey I. Nikolaev, Christian Iseli, Andrew J. Sharp, et al.Daniel Robyr, Jacques Rougemont, Corinne Gehrig, Laurent Farinelli, Stylianos E. Antonarakis posted to variation solexa snp-calling rolexa resequencing illumina genome enrichment capture by n00c on 2009-11-30 21:05:35 as along with 2 people torfinnnome thegoose
	BFAST: An Alignment Tool for Large Scale Genome Resequencing [My Copy] PloS one In PLoS ONE, Vol. 4, No. 11. (11 November 2009), e7767. by Nils Homer, Barry Merriman, Stanley F. Nelson posted to tool software resequencing mapper map genome bfast alignment algorithm by n00c on 2009-11-18 22:33:20 as along with 7 people gdb oannes friendpine zwang druvus torfinnnome idonaldson
	Comprehensive resequence analysis of a 97 kb region of chromosome 10q11.2 containing the MSMB gene associated with prostate cancer [My Copy] Human Genetics (31 July 2009) by Meredith Yeager, Zuoming Deng, Joseph Boland, et al.Casey Matthews, Jennifer Bacior, Victor Lonsberry, Amy Hutchinson, Laura Burdett, Liqun Qi, Kevin Jacobs, Jesus Gonzalez-Bosquet, Sonja Berndt, Richard Hayes, Robert Hoover, Gilles Thomas, David Hunter, Michael Dean, Stephen Chanock posted to variant-calling target-region snp-calling resequencing mosaik 454 by n00c on 2009-11-16 23:28:24 as along with 1 person xingxu
	Microdroplet-based PCR enrichment for large-scale targeted sequencing [My Copy] Nature Biotechnology In Nat Biotech, Vol. 27, No. 11. (01 November 2009), pp. 1025-1031. by Ryan Tewhey, Jason B. Warner, Masakazu Nakano, et al.Brian Libby, Martina Medkova, Patricia H. David, Steve K. Kotsopoulos, Michael L. Samuels, J. Brian Hutchison, Jonathan W. Larson, Eric J. Topol, Michael P. Weiner, Olivier Harismendy, Jeff Olson, Darren R. Link, Kelly A. Frazer posted to targeted sequencing resequencing pcr microdroplet enrichment by torfinnnome on 2009-11-09 12:33:44 as along with 3 people and 2 groups n00c chvlyl qayub Reunions Biblio Spectro-IAB Journal picks
	Genome-wide association and replication studies identify four variants associated with prostate cancer susceptibility [My Copy] Nature Genetics, Vol. 41, No. 10. (20 September 2009), pp. 1122-1126. by Julius Gudmundsson, Patrick Sulem, Daniel F. Gudbjartsson, et al.Thorarinn Blondal, Arnaldur Gylfason, Bjarni A. Agnarsson, Kristrun R. Benediktsdottir, Droplaug N. Magnusdottir, Gudbjorg Orlygsdottir, Margret Jakobsdottir, Simon N. Stacey, Asgeir Sigurdsson, Tiina Wahlfors, Teuvo Tammela, Joan P. Breyer, Kate M. McReynolds, Kevin M. Bradley, Berta Saez, Javier Godino, Sebastian Navarrete, Fernando Fuertes, Laura Murillo, Eduardo Polo, Katja K. Aben, Inge M. van Oort, Brian K. Suarez, Brian T. Helfand, Donghui Kan, Carlo Zanon, Michael L. Frigge, Kristleifur Kristjansson, Jeffrey R. Gulcher, Gudmundur V. Einarsson, Eirikur Jonsson, William J. Catalona, Jose I. Mayordomo, Lambertus A. Kiemeney, Jeffrey R. Smith, Johanna Schleutker, Rosa B. Barkardottir, Augustine Kong, Unnur Thorsteinsdottir, Thorunn Rafnar, Kari Stefansson posted to resequencing gwas complex_diease by liqbbi on 2009-11-09 08:31:48 as along with 3 people misonneh mkiyer xingxu
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to sequencing review resequencing mapping assembly alignment by n00c on 2009-10-30 19:15:41 as along with 15 people and 1 group idoerg ajsferreira pst owenlancaster robertrentzsch oannes74 Thaverkamp jasontsai natstreet seb1 druvus chvlyl GeeSharpMinor venancio desany Orengo Group Journal Picks
	Computational methods for discovering structural variation with next-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S13-S20. by Paul Medvedev, Monica Stanciu, Michael Brudno posted to variant structure resequencing by n00c on 2009-10-30 19:03:36 as along with 17 people and 2 groups seb1 pst owenlancaster robertrentzsch oannes74 toszko kiekyon michaelbarton jasontsai sameersoi heliopais druvus GeeSharpMinor Peiyong gdv desany qayub Orengo Group Journal Picks Journal picks
	A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation [My Copy] Nature Genetics, Vol. 41, No. 5. (19 April 2009), pp. 535-543. by Patrick S. Tarpey, Raffaella Smith, Erin Pleasance, et al.Annabel Whibley, Sarah Edkins, Claire Hardy, Sarah O'Meara, Calli Latimer, Ed Dicks, Andrew Menzies, Phil Stephens, Matt Blow, Chris Greenman, Yali Xue, Chris Tyler-Smith, Deborah Thompson, Kristian Gray, Jenny Andrews, Syd Barthorpe, Gemma Buck, Jennifer Cole, Rebecca Dunmore, David Jones, Mark Maddison, Tatiana Mironenko, Rachel Turner, Kelly Turrell, Jennifer Varian, Sofie West, Sara Widaa, Paul Wray, Jon Teague, Adam Butler, Andrew Jenkinson, Mingming Jia, David Richardson, Rebecca Shepherd, Richard Wooster, M. Isabel Tejada, Francisco Martinez, Gemma Carvill, Rene Goliath, Arjan P. M. de Brouwer, Hans van Bokhoven, Hilde Van Esch, Jamel Chelly, Martine Raynaud, Hans-Hilger Ropers, Fatima E. Abidi, Anand K. Srivastava, James Cox, Ying Luo, Uma Mallya, Jenny Moon, Josef Parnau, Shehla Mohammed, John L. Tolmie, Cheryl Shoubridge, Mark Corbett, Alison Gardner, Eric Haan, Sinitdhorn Rujirabanjerd, Marie Shaw, Lucianne Vandeleur, Tod Fullston, Douglas F. Easton, Jackie Boyle, Michael Partington, Anna Hackett, Michael Field, Cindy Skinner, Roger E. Stevenson, Martin Bobrow, Gillian Turner, Charles E. Schwartz, Jozef Gecz, F. Lucy Raymond, P. Andrew Futreal, Michael R. Stratton posted to systematic screen resequencing large-scale exons coding a by Peiyong on 2009-10-30 07:09:47 as along with 5 people and 2 groups vplagnol avilella jandot fenghezi daforerog Ensembl Compara citations Journal picks
	Sequence-level population simulations over large genomic regions. [My Copy] Genetics, Vol. 177, No. 3. (1 November 2007), pp. 1725-1731. by Clive J. Hoggart, Marc Chadeau-Hyam, Taane G. Clark, et al.Riccardo Lampariello, John C. Whittaker, Maria De Iorio, David J. Balding posted to statistics software resequencing by orzenil on 2009-10-25 17:39:15 as along with 3 people renewang ryanraaum guhjy
	Simultaneous Analysis of All SNPs in Genome-Wide and Re-Sequencing Association Studies [My Copy] PLoS Genet, Vol. 4, No. 7. (25 July 2008), e1000130. by Clive J. Hoggart, John C. Whittaker, Maria De Iorio, David J. Balding posted to statistics software resequencing by orzenil on 2009-10-25 17:34:49 as along with 10 people rdiaz ajbattle kimorley akmanning daforerog shoshin djkt Stew guhjy Schmidtc
	Population-based resequencing of ANGPTL4 uncovers variations that reduce triglycerides and increase HDL [My Copy] Nature Genetics, Vol. 39, No. 4. (25 February 2007), pp. 513-516. by Stefano Romeo, Len A. Pennacchio, Yunxin Fu, et al.Eric Boerwinkle, Anne Tybjaerg-Hansen, Helen H. Hobbs, Jonathan C. Cohen posted to resequencing rare_snp by liqbbi on 2009-10-12 14:11:46 as along with 3 people daforerog caldavis caseybrown
	Genome-wide in situ exon capture for selective resequencing [My Copy] Nat Genet, Vol. 39, No. 12. (04 November 2007), pp. 1522-1527. by Emily Hodges, Zhenyu Xuan, Vivekanand Balija, et al.Melissa Kramer, Michael N. Molla, Steven W. Smith, Christina M. Middle, Matthew J. Rodesch, Thomas J. Albert, Gregory J. Hannon, W. Richard McCombie posted to target_enrichment sequencing resequencing genetics by jmanning2k on 2009-10-07 17:39:13 as along with 7 people dpsuslo8 vmsr felsani kintoki giovanni jo_davies guhjy
	Combinatorics and next-generation sequencing [My Copy] Nature Biotechnology, Vol. 27, No. 9. (01 September 2009), pp. 826-827. by Nick Patterson, Stacey Gabriel posted to sudoku resequencing pool-design pool multiplexing combinatorics by n00c on 2009-10-01 16:10:29 as along with 7 people and 1 group ethanmj ptrobajo orzenil torfinnnome inesdesantiago qayub rmk Journal picks
	CNV-seq, a new method to detect copy number variation using high-throughput sequencing. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 80. by Chao Xie, Martti T. Tammi posted to resequencing copy-number cnv-seq cnv by n00c on 2009-09-29 16:33:06 as along with 18 people and 1 group hzoltan biovils stubrown cthachuk GustavoLacerda darian bmenten natstreet sameersoi svenrahmann xiechao semrich pkonings rdiaz dswan sleepingcell neils magusina Bioinformatics
	Whole-genome re-sequencing. [My Copy] Current opinion in genetics & development In Genomes and evolution, Vol. 16, No. 6. (December 2006), pp. 545-552. by David R. Bentley posted to viewer review resequencing pipeline gap by n00c on 2009-09-29 16:20:29 as along with 14 people and 3 groups pristanna rshe druvus anuskap mmartin jameswasmuth usagi-kirin jmeppley frohike indigoviolet dchughes azazello jo_davies kmdaily EisenLab G4ID Genetics-of-Gambling
	Accurate whole human genome sequencing using reversible terminator chemistry. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 53-59. by David R. Bentley, Shankar Balasubramanian, Harold P. Swerdlow, et al.Geoffrey P. Smith, John Milton, Clive G. Brown, Kevin P. Hall, Dirk J. Evers, Colin L. Barnes, Helen R. Bignell, Jonathan M. Boutell, Jason Bryant, Richard J. Carter, R. Keira Cheetham, Anthony J. Cox, Darren J. Ellis, Michael R. Flatbush, Niall A. Gormley, Sean J. Humphray, Leslie J. Irving, Mirian S. Karbelashvili, Scott M. Kirk, Heng Li, Xiaohai Liu, Klaus S. Maisinger, Lisa J. Murray, Bojan Obradovic, Tobias Ost, Michael L. Parkinson, Mark R. Pratt, Isabelle M. J. Rasolonjatovo, Mark T. Reed, Roberto Rigatti, Chiara Rodighiero, Mark T. Ross, Andrea Sabot, Subramanian V. Sankar, Aylwyn Scally, Gary P. Schroth, Mark E. Smith, Vincent P. Smith, Anastassia Spiridou, Peta E. Torrance, Svilen S. Tzonev, Eric H. Vermaas, Klaudia Walter, Xiaolin Wu, Lu Zhang, Mohammed D. Alam, Carole Anastasi, Ify C. Aniebo, David M. D. Bailey, Iain R. Bancarz, Saibal Banerjee, Selena G. Barbour, Primo A. Baybayan, Vincent A. Benoit, Kevin F. Benson, Claire Bevis, Phillip J. Black, Asha Boodhun, Joe S. Brennan, John A. Bridgham, Rob C. Brown, Andrew A. Brown, Dale H. Buermann, Abass A. Bundu, James C. Burrows, Nigel P. Carter, Nestor Castillo, Maria Chiara, Simon Chang, R. Neil Cooley, Natasha R. Crake, Olubunmi O. Dada, Konstantinos D. Diakoumakos, Belen Dominguez-Fernandez, David J. Earnshaw, Ugonna C. Egbujor, David W. Elmore, Sergey S. Etchin, Mark R. Ewan, Milan Fedurco, Louise J. Fraser, Karin V. Fuentes Fajardo, W. Scott Furey, David George, Kimberley J. Gietzen, Colin P. Goddard, George S. Golda, Philip A. Granieri, David E. Green, David L. Gustafson, Nancy F. Hansen, Kevin Harnish, Christian D. Haudenschild, Narinder I. Heyer, Matthew M. Hims, Johnny T. Ho, Adrian M. Horgan, Katya Hoschler, Steve Hurwitz, Denis V. Ivanov, Maria Q. Johnson, Terena James, T. A. Huw Jones, Gyoung-Dong Kang, Tzvetana H. Kerelska, Alan D. Kersey, Irina Khrebtukova, Alex P. Kindwall, Zoya Kingsbury, Paula I. Kokko-Gonzales, Anil Kumar, Marc A. Laurent, Cynthia T. Lawley, Sarah E. Lee, Xavier Lee, Arnold K. Liao, Jennifer A. Loch, Mitch Lok, Shujun Luo, Radhika M. Mammen, John W. Martin, Patrick G. McCauley, Paul McNitt, Parul Mehta, Keith W. Moon, Joe W. Mullens, Taksina Newington, Zemin Ning, Bee L. Ng, Sonia M. Novo, Michael J. O'Neill, Mark A. Osborne, Andrew Osnowski, Omead Ostadan, Lambros L. Paraschos, Lea Pickering, Andrew C. Pike, Alger C. Pike, D. Chris Pinkard, Daniel P. Pliskin, Joe Podhasky, Victor J. Quijano, Come Raczy, Vicki H. Rae, Stephen R. Rawlings, Ana C. Rodriguez, Phyllida M. Roe, John Rogers, Maria C. Rogert Bacigalupo, Nikolai Romanov, Anthony Romieu, Rithy K. Roth, Natalie J. Rourke, Silke T. Ruediger, Eli Rusman, Raquel M. Sanches-Kuiper, Martin R. Schenker, Josefina M. Seoane, Richard J. Shaw, Mitch K. Shiver, Steven W. Short, Ning L. Sizto, Johannes P. Sluis, Melanie A. Smith, Jean Ernest Sohna Sohna, Eric J. Spence, Kim Stevens, Neil Sutton, Lukasz Szajkowski, Carolyn L. Tregidgo, Gerardo Turcatti, Stephanie vandeVondele, Yuli Verhovsky, Selene M. Virk, Suzanne Wakelin, Gregory C. Walcott, Jingwen Wang, Graham J. Worsley, Juying Yan, Ling Yau, Mike Zuerlein, Jane Rogers, James C. Mullikin, Matthew E. Hurles, Nick J. McCooke, John S. West, Frank L. Oaks, Peter L. Lundberg, David Klenerman, Richard Durbin, Anthony J. Smith posted to yoruba tpgp solexa resequencing maq individual-human-genome illumina genome eland by n00c on 2009-09-28 15:30:03 as along with 29 people and 1 group hzoltan rshe pst gbenson giovenko clearbluespring xingxu dna austin jessopher daforerog vmsr jfr azazello nuin usagi-kirin Archaeogenetics malcook psique tsherig jbhiatt pengchy reyez jmcq inesdesantiago ojabado caseybrown pkonings djkt SIMR bioinformatics
	Targeted capture and massively parallel sequencing of 12 human exomes. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 272-276. by Sarah B. Ng, Emily H. Turner, Peggy D. Robertson, et al.Steven D. Flygare, Abigail W. Bigham, Choli Lee, Tristan Shaffer, Michelle Wong, Arindam Bhattacharjee, Evan E. Eichler, Michael Bamshad, Deborah A. Nickerson, Jay Shendure posted to variant snp-discovery sequencing resequencing hapmap genetics exome disorder capture by n00c on 2009-09-28 15:20:55 as along with 23 people and 1 group seb1 hzoltan liqbbi chvlyl ongenetics psique fenghezi dswan jmanning2k torfinnnome GeeSharpMinor pkonings neils djkt daforerog PabloMarin stubrown danmaclean xingxu vplagnol druvus jandot frohike Journal picks
	Finishing Repetitive Regions Automatically with Dupfinisher [My Copy] by Cliff S. Han, Patrick Chain posted to resequencing repeat ngs by natstreet on 2009-09-26 14:04:52 as along with 1 person druvus
	Impact of the next generation DNA sequencers. [My Copy] International journal of clinical and experimental medicine, Vol. 2, No. 2. (2009), pp. 193-202. by Kikuya Kato posted to sequencing review resequencing dna by n00c on 2009-09-26 01:50:21 as along with 4 people and 1 group dswan jandot sitalange darian Journal picks
	Next-Generation Sequencing Methods: Impact of Sequencing Accuracy on SNP Discovery [My Copy] Single Nucleotide Polymorphisms (2009), pp. 95-111. by Eugene Y. Chan posted to solexa snp-discovery snp resequencing repeats methods illumina helicos by n00c on 2009-09-26 01:49:02 as
	Simultaneous alignment of short reads against multiple genomes [My Copy] Genome Biology, Vol. 10, No. 9. (17 September 2009), R98. by Korbinian Schneeberger, Jorg Hagmann, Stephan Ossowski, et al.Norman Warthmann, Sandra Gesing, Oliver Kohlbacher, Detlef Weigel posted to short-read resequencing reference assembly by torfinnnome on 2009-09-24 07:13:47 as along with 12 people n00c seninp darian maren megraw djkt fstrozzi jamselem justinhjohnson reyez natstreet druvus
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by M. Pop, S. Salzberg posted to resequencing bioinformatics by n00c on 2009-09-18 00:01:17 as along with 36 people Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog ptrobajo orzenil APRegier katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	novoSNP3: variant detection and sequence annotation in resequencing projects. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 396 (2007), pp. 331-344. by P. D. Rijk, J. Del-Favero posted to tool software snp-discovery snp resequencing novosnp3 novosnp by n00c on 2009-09-17 19:56:56 as along with 1 person csrocha
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted to visualization resequencing f-seq binding by n00c on 2009-09-13 07:39:00 as along with 18 people and 2 groups hzoltan darian idonaldson michaelbarton inesdesantiago gdb ewilban1 tonamswish guhjy kmdaily cassj fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad JLab BergmanLab
	Quality and completeness of SNP databases [My Copy] Nature Genetics, Vol. 33, No. 4. (24 March 2003), pp. 457-458. by David E. Reich, Stacey B. Gabriel, David Altshuler posted to snp resequencing database by n00c on 2009-09-12 18:32:13 as along with 2 people jsatkosk farhat
	TagDust--a program to eliminate artifacts from next generation sequencing data [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2839-2840. by Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub posted to tool tagdust software resequencing low-complexity dust by n00c on 2009-09-09 17:56:03 as along with 20 people and 1 group orzenil hzoltan chvlyl operon kshameer djkt rtogawa seb1 idonaldson nuin debasis jgill GeeSharpMinor sotacam torfinnnome walshtp heliopais jandot rschulz druvus Journal picks
	Updates to the RMAP short-read mapping software [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2841-2842. by Andrew D. Smith, Wen-Yu Chung, Emily Hodges, et al.Jude Kendall, Greg Hannon, James Hicks, Zhenyu Xuan, Michael Q. Zhang posted to tool software short-read rmap resequencing map by n00c on 2009-09-08 23:08:52 as along with 8 people and 1 group seb1 darian natstreet djkt rtogawa idonaldson heliopais druvus Journal picks
	Rapid whole-genome mutational profiling using next-generation sequencing technologies. [My Copy] Genome research, Vol. 18, No. 10. (4 October 2008), pp. 1638-1642. by Douglas R. Smith, Aaron R. Quinlan, Heather E. Peckham, et al.Kathryn Makowsky, Wei Tao, Betty Woolf, Lei Shen, William F. Donahue, Nadeem Tusneem, Michael P. Stromberg, Donald A. Stewart, Lu Zhang, Swati S. Ranade, Jason B. Warner, Clarence C. Lee, Brittney E. Coleman, Zheng Zhang, Stephen F. McLaughlin, Joel A. Malek, Jon M. Sorenson, Alan P. Blanchard, Jarrod Chapman, David Hillman, Feng Chen, Daniel S. Rokhsar, Kevin J. McKernan, Thomas W. Jeffries, Gabor T. Marth, Paul M. Richardson posted to solid solexa snp-discovery snp-calling resequencing pyrobayes mutations mosaik illumina gigabayes coverage abi 454 by n00c on 2009-09-03 16:10:17 as along with 7 people robsyme druvus skoddet yupu jfr jmcq GeeSharpMinor
	Sensitive and accurate detection of copy number variants using read depth of coverage [My Copy] Genome Research, Vol. 19, No. 9. (5 September 2009), pp. 1586-1592. by Seungtai Yoon, Zhenyu Xuan, Vladimir Makarov, Kenny Ye, Jonathan Sebat posted to resequencing coverage cnv by n00c on 2009-09-02 21:12:00 as along with 7 people woodson8 scmelton torfinnnome dakelley rdiaz jbhiatt pkonings
	Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding [My Copy] Genome Research, Vol. 19, No. 9. (22 September 2009), pp. 1527-1541. by Kevin J. McKernan, Heather E. Peckham, Gina L. Costa, et al.Stephen F. McLaughlin, Yutao Fu, Eric F. Tsung, Christopher R. Clouser, Cisyla Duncan, Jeffrey K. Ichikawa, Clarence C. Lee, Zheng Zhang, Swati S. Ranade, Eileen T. Dimalanta, Fiona C. Hyland, Tanya D. Sokolsky, Lei Zhang, Andrew Sheridan, Haoning Fu, Cynthia L. Hendrickson, Bin Li, Lev Kotler, Jeremy R. Stuart, Joel A. Malek, Jonathan M. Manning, Alena A. Antipova, Damon S. Perez, Michael P. Moore, Kathleen C. Hayashibara, Michael R. Lyons, Robert E. Beaudoin, Brittany E. Coleman, Michael W. Laptewicz, Adam E. Sannicandro, Michael D. Rhodes, Rajesh K. Gottimukkala, Shan Yang, Vineet Bafna, Ali Bashir, Andrew MacBride, Can Alkan, Jeffrey M. Kidd, Evan E. Eichler, Martin G. Reese, Francisco M. De La Vega, Alan P. Blanchard posted to structural solid short-read resequencing human by APRegier on 2009-09-02 16:44:15 as along with 17 people hzoltan gbenson adijr chrisamiller heliopais daforerog druvus djkt psique sameersoi fenghezi jmanning2k xingxu pkonings n00c jandot natstreet
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to resequencing mrfast map illumina copy-number cnv 454 by n00c on 2009-09-02 16:25:14 as along with 30 people and 1 group ongenetics chvlyl leemachado daed gbenson bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant torfinnnome jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	Complete Resequencing of 40 Genomes Reveals Domestication Events and Genes in Silkworm (Bombyx) [My Copy] Science, Vol. 326, No. 5951. (16 October 2009), pp. 433-436. by Qingyou Xia, Yiran Guo, Ze Zhang, et al.Dong Li, Zhaoling Xuan, Zhuo Li, Fangyin Dai, Yingrui Li, Daojun Cheng, Ruiqiang Li, Tingcai Cheng, Tao Jiang, Celine Becquet, Xun Xu, Chun Liu, Xingfu Zha, Wei Fan, Ying Lin, Yihong Shen, Lan Jiang, Jeffrey Jensen, Ines Hellmann, Si Tang, Ping Zhao, Hanfu Xu, Chang Yu, Guojie Zhang, Jun Li, Jianjun Cao, Shiping Liu, Ningjia He, Yan Zhou, Hui Liu, Jing Zhao, Chen Ye, Zhouhe Du, Guoqing Pan, Aichun Zhao, Haojing Shao, Wei Zeng, Ping Wu, Chunfeng Li, Minhui Pan, Jingjing Li, Xuyang Yin, Dawei Li, Juan Wang, Huisong Zheng, Wen Wang, Xiuqing Zhang, Songgang Li, Huanming Yang, Cheng Lu, Rasmus Nielsen, Zeyang Zhou, Jian Wang, Zhonghuai Xiang, Jun Wang posted to variation snp resequencing population ngs by natstreet on 2009-09-02 07:56:56 as along with 6 people and 2 groups venancio cisevol dinnes fstrozzi operon biomcgary BergmanLab Journal picks
	Rare Variants of IFIH1, a Gene Implicated in Antiviral Responses, Protect Against Type 1 Diabetes [My Copy] Science, Vol. 324, No. 5925. (17 April 2009), pp. 387-389. by Sergey Nejentsev, Neil Walker, David Riches, Michael Egholm, John A. Todd posted to resequencing pool multiplexing gwas 454 by n00c on 2009-08-24 21:51:37 as along with 8 people and 2 groups liqbbi vplagnol jandot APRegier myzhang pkonings absterga jbhiatt Journal picks Marcotte_Lab
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, A. C. Eugenia Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted to resequencing rearrangements paired-end mapping by torfinnnome on 2009-08-21 09:51:13 as along with 22 people and 2 groups jandot n00c jonilaserson jrvalcourt APRegier jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dpollard dchughes AaronDarling rdiaz giovanni jlangdon annacarina07 Neeperando jfr caseybrown Journal picks EisenLab
	PineSAP--sequence alignment and SNP identification pipeline [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2609-2610. by Jill L. Wegrzyn, Jennifer M. Lee, John Liechty, David B. Neale posted to software snp-calling snp resequencing pipeline pinesap machine-learning alignment by n00c on 2009-08-17 01:57:22 as along with 7 people jasontsai jsatkosk daforerog djkt operon nuin druvus
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to visualization viewer software short-read sequencing resequencing lookseq by n00c on 2009-08-14 21:47:57 as along with 27 people and 2 groups hzoltan darian dakelley tonamswish inesdesantiago Thaverkamp idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil operon guhjy kongl stajich torfinnnome nuin kshameer neils druvus natstreet BergmanLab Mycology
	Association and Mutation Analyses of 16p11.2 Autism Candidate Genes [My Copy] PLoS ONE, Vol. 4, No. 2. (26 February 2009), e4582. by Ravinesh A. Kumar, Christian R. Marshall, Judith A. Badner, et al.Timothy D. Babatz, Zohar Mukamel, Kimberly A. Aldinger, Jyotsna Sudi, Camille W. Brune, Gerald Goh, Samer Karamohamed, James S. Sutcliffe, Edwin H. Cook, Daniel H. Geschwind, William B. Dobyns, Stephen W. Scherer, Susan L. Christian posted to resequencing autism by jandot on 2009-08-13 18:14:41 as along with 2 people daforerog jdbowes
	Genetic variation in genes of the fatty acid synthesis pathway and breast cancer risk. [My Copy] Breast cancer research and treatment (28 February 2009) by Daniele Campa, James McKay, Olga Sinilnikova, et al.Anika Hüsing, Ulla Vogel, Rikke D. Hansen, Kim Overvad, Petra M. Witt, Françoise Clavel-Chapelon, Marie-Christine C. Boutron-Ruault, Veronique Chajes, Sabine Rohrmann, Jenny Chang-Claude, Heiner Boeing, Eva Fisher, Antonia Trichopoulou, Dimitrios Trichopoulos, Domenico Palli, Anna Villarini, Carlotta Sacerdote, Amalia Mattiello, Rosario Tumino, Petra H. Peeters, Carla H. van Gils, H. Bas Bueno-de-Mesquita, Eiliv Lund, María D. Chirlaque, Núria Sala, Laudina R. Suarez, Aurelio Barricarte, Miren Dorronsoro, Maria-José J. Sánchez, Per Lenner, Göran Hallmans, Kostas Tsilidis, Sheila Bingham, Kay-Tee T. Khaw, Valentina Gallo, Teresa Norat, Elio Riboli, Sabina Rinaldi, Gilbert Lenoir, Sean V. Tavtigian, Federico Canzian, Rudolf Kaaks posted to resequencing cancer by jandot on 2009-08-13 18:13:03 as along with 1 person fedecan
	High-throughput genotyping by whole-genome resequencing. [My Copy] Genome research, Vol. 19, No. 6. (6 June 2009), pp. 1068-1076. by Xuehui Huang, Qi Feng, Qian Qian, et al.Qiang Zhao, Lu Wang, Ahong Wang, Jianping Guan, Danlin Fan, Qijun Weng, Tao Huang, Guojun Dong, Tao Sang, Bin Han posted to pf454-paper plants resequencing short-read snps by APRegier on 2009-08-10 16:27:17 as along with 9 people jandot n00c reyez sandfire djkt natstreet jbhiatt GeeSharpMinor langmead
	Sequencing of natural strains of Arabidopsis thaliana with short reads. [My Copy] Genome research, Vol. 18, No. 12. (29 December 2008), pp. 2024-2033. by Stephan Ossowski, Korbinian Schneeberger, Richard M. Clark, Christa Lanz, Norman Warthmann, Detlef Weigel posted to illumina resequencing short-read by APRegier on 2009-08-07 20:29:36 as along with 11 people and 2 groups seninp n00c sameersoi dandaman jasontsai stajich xwbcn natstreet druvus GustavoLacerda semrich Mycology Notre Dame Bioinformatics
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to maq resequencing short-read by APRegier on 2009-08-07 20:27:48 as along with 38 people and 2 groups seninp heliopais hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted to ngs resequencing by GustavoLacerda on 2009-08-06 05:29:51 as along with 18 people darian hzoltan n00c rdiaz aezrin jandot guhjy jessopher megraw jonilaserson chrisamiller dandaman sameersoi djkt dakelley APRegier natstreet druvus
	The complete genome of an individual by massively parallel DNA sequencing. [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 872-876. by David A. Wheeler, Maithreyan Srinivasan, Michael Egholm, et al.Yufeng Shen, Lei Chen, Amy McGuire, Wen He, Yi-Ju Chen, Vinod Makhijani, G. Thomas Roth, Xavier Gomes, Karrie Tartaro, Faheem Niazi, Cynthia L. Turcotte, Gerard P. Irzyk, James R. Lupski, Craig Chinault, Xing-zhi Song, Yue Liu, Ye Yuan, Lynne Nazareth, Xiang Qin, Donna M. Muzny, Marcel Margulies, George M. Weinstock, Richard A. Gibbs, Jonathan M. Rothberg posted to watson tpgp snp resequencing pyrosequencing individual-human-genome genome 454 by n00c on 2009-07-28 18:47:35 as along with 23 people and 2 groups rshe jonilaserson jessopher daforerog behindtherabbit frohike reyez pengchy adijr jo_davies jfr orzenil dullhunk djkt ramensky psique caseybrown melting dbensasson bpb Neeperando Huub_odc guhjy parkinson's disease references microbiology_nijmegen

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sequencing	20
snp	20
microarray	14
454	13
short-read	13
software	11
solexa	11
snp-calling	10
assembly	8
illumina	8
variant	7
design	6
enrichment	6
multiplexing	6
reassembly	6
snp-discovery	6
tool	6
bioinformatics	5
capture	5
exome	5
genome	5
oligonucleotide	5
reassesmbly	5
review	5
solid	5
alignment	4
cnv	4
genotyping	4
ngs	4
pool	4
pool-design	4
primer-design	4
pyrosequencing	4
variation	4
arabidopsis	3
cancer	3
exon_capture	3
map	3
mental_retardation	3
methods	3
mosaik	3
probe-design	3
probe-selection	3
resistance	3
statistics	3
tpgp	3
abi	2
base-calling	2
copy-number	2
coverage	2
database	2
disease	2
dna	2
genetics	2
genotype	2
gwas	2
hybridisation	2
individual-human-genome	2
mapping	2
maq	2
melting	2
microarrays	2
nextgensequencing	2
pcr	2
pf454-paper	2
pipeline	2
pyrobayes	2
read	2
recombination	2
repeat	2
sequence	2
short	2
short_read	2
short_reads	2
signal-intensity	2
structural	2
sudoku	2
thermodynamics	2
viewer	2
visualization	2
whole_genome_seq	2
yeast	2
10q11	1
algorithm	1
bayesian	1
broad-institute	1
exons	1
functional_genomics	1
inversion-paper	1
microdroplet	1
msmb	1
personal-genomics	1
pooling	1
sbh	1
sequence-alignment	1
short-reads	1
sv	1
tagdust	1
target_enrichment	1
watson	1

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