Tag retrotransposition [187 articles] Export

Recent papers classified by the tag retrotransposition.

	A novel active endogenous retrovirus family contributes to genome variability in rat inbred strains [My Copy] Genome Research (3 November 2009) by Yongming Wang, FrantiÅ¡ek LiÅ¡ka, Claudia Gosele, et al. Edovã¡, VladimÃr Kren, DrahomÃra KrenovÃ¡, Zoltan Ivics, Norbert Hubner, Zsuzsanna Izsvak posted to retrovirus retrotransposon retrotransposition endogenous-retrovirus by dchughes on 2009-11-04 22:26:08 as
	Mobile element-based forensic genomics. [My Copy] Mutation research, Vol. 616, No. 1-2. (1 March 2007), pp. 24-33. by David A. Ray, Jerilyn A. Walker, Mark A. Batzer posted to retrotransposon retrotransposition forensic by dchughes on 2009-10-29 23:11:41 as
	Reading between the LINEs to see into the past [My Copy] Trends in Genetics (16 October 2009) by David A. Ray, Roy N. Platt, Mark A. Batzer posted to retrotransposon retrotransposition line_1 line by dchughes on 2009-10-28 11:08:19 as along with 1 person operon
	Duplication mechanism and disruptions in flanking regions determine the fate of Mammalian gene duplicates. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 9. (September 2009), pp. 1253-1266. by Jin Jun, Paul Ryvkin, Edward Hemphill, Craig Nelson posted to retrotransposition mammals genomewide evolution by clearbluespring on 2009-09-28 12:14:17 as
	Retrotransposons revisited: the restraint and rehabilitation of parasites. [My Copy] Cell, Vol. 135, No. 1. (3 October 2008), pp. 23-35. by John L. Goodier, Haig H. Kazazian posted to retrotransposon retrotransposition exaptation by dchughes on 2009-09-17 15:02:43 as along with 4 people diamantis gwallau sebastien_vigneau operon
	Allan Award Lecture: on jumping fields and "jumping genes". [My Copy] American journal of human genetics, Vol. 84, No. 2. (February 2009), pp. 105-114. by Haig H. Kazazian posted to retrotransposon retrotransposition by dchughes on 2009-09-17 15:01:54 as
	Exonization of active mouse L1s: a driver of transcriptome evolution? [My Copy] BMC genomics, Vol. 8 (26 October 2007), 392. by Tomasz Zemojtel, Tobias Penzkofer, Jörg Schultz, Thomas Dandekar, Richard Badge, Martin Vingron posted to retrotransposon retrotransposition line l1 by dchughes on 2009-09-16 13:54:56 as along with 3 people and 1 group cisevol paulcartwright FMoncini BergmanLab
	Not born equal: increased rate asymmetry in relocated and retrotransposed rodent gene duplicates. [My Copy] Molecular biology and evolution, Vol. 24, No. 3. (March 2007), pp. 679-686. by Brian P. Cusack, Kenneth H. Wolfe posted to retrotransposition retrogene paralog gene_duplication expression biased_mutation by biomcgary on 2009-09-02 22:52:55 as along with 1 person shoshin
	Mobile elements create structural variation: Analysis of a complete human genome [My Copy] Genome Research, Vol. 19, No. 9. (13 September 2009), pp. 1516-1526. by Jinchuan Xing, Yuhua Zhang, Kyudong Han, et al.Abdel H. Salem, Shurjo K. Sen, Chad D. Huff, Qiong Zhou, Ewen F. Kirkness, Samuel Levy, Mark A. Batzer, Lynn B. Jorde posted to sine retrotransposon retrotransposition line human-variation by dchughes on 2009-09-02 13:09:48 as along with 10 people and 1 group operon n00c djkt sameersoi APRegier fenghezi jandot Dulcinea natstreet JustinCrocker Journal picks
	L1 retrotransposition in human neural progenitor cells [My Copy] Nature, Vol. 460, No. 7259. (05 August 2009), pp. 1127-1131. by Nicole G. Coufal, Jose L. Garcia-Perez, Grace E. Peng, et al.Gene W. Yeo, Yangling Mu, Michael T. Lovci, Maria Morell, K. Sue OâShea, John V. Moran, Fred H. Gage posted to stem_cell somatic_cell retrotransposition repetitive_sequence neuron line_long_interspersed_element development brain by biomcgary on 2009-08-26 19:14:26 as along with 5 people and 1 group djkt fenghezi gangcai pkonings rschulz Journal picks
	An Expressed Fgf4 Retrogene Is Associated with Breed-Defining Chondrodysplasia in Domestic Dogs [My Copy] Science, Vol. 325, No. 5943. (21 August 2009), pp. 995-998. by Heidi G. Parker, Bridgett M. Vonholdt, Pascale Quignon, et al.Elliott H. Margulies, Stephanie Shao, Dana S. Mosher, Tyrone C. Spady, Abdel Elkahloun, Michele Cargill, Paul G. Jones, Cheryl L. Maslen, Gregory M. Acland, Nathan B. Sutter, Keiichi Kuroki, Carlos D. Bustamante, Robert K. Wayne, Elaine A. Ostrander posted to retrotransposition retrogene phenotype growth_factor gene_duplication evolution dog by biomcgary on 2009-08-25 22:01:28 as along with 3 people and 1 group qayub rschulz jbhiatt Journal picks
	More Than Just a Copy [My Copy] Science, Vol. 325, No. 5943. (21 August 2009), pp. 958-959. by Henrik Kaessmann posted to retrotransposition perspective leg-length fgf4 dog bone by rschulz on 2009-08-21 10:00:01 as along with 3 people aprickett reyez kentsis
	Retrotransposon overdose and genome integrity. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 33. (18 August 2009), pp. 13927-13932. by Lisa Z. Scheifele, Gregory J. Cost, Margaret L. Zupancic, Emerita M. Caputo, Jef D. Boeke posted to retrotransposon retrotransposition by dchughes on 2009-08-19 11:02:37 as along with 1 person operon
	Retrotransposable elements and human disease. [My Copy] Genome dynamics, Vol. 1 (2006), pp. 104-115. by P. A. Callinan, M. A. Batzer posted to retrovirus retrotransposon retrotransposition retrogene by dchughes on 2009-08-18 13:01:10 as
	Are transposable elements simply silenced or are they under house arrest? [My Copy] Trends in genetics : TIG, Vol. 25, No. 8. (02 August 2009), pp. 333-334. by Christian Biémont posted to transposon retrotransposon retrotransposition by dchughes on 2009-08-17 11:36:59 as along with 2 people venancio jamselem
	Evolutionary Origin and Functions of Retrogene Introns [My Copy] Mol Biol Evol, Vol. 26, No. 9. (1 September 2009), pp. 2147-2156. by Marie Fablet, Manuel Bueno, Lukasz Potrzebowski, Henrik Kaessmann posted to retrotransposon retrotransposition retrogene by dchughes on 2009-08-14 11:28:56 as along with 4 people inesdesantiago operon rschulz clearbluespring
	Identification of a novel retina-specific gene located in a subtelomeric region with polymorphic distribution among multiple human chromosomes. [My Copy] Biochimica et biophysica acta, Vol. 1522, No. 3. (30 December 2001), pp. 167-174. by N. Mah, H. Stoehr, H. L. Schulz, K. White, B. H. Weber posted to f379 mir retina retrotransposition by dchughes on 2009-08-06 15:30:17 as
	Tracking the past: Interspersed repeats in an extinct Afrotherian mammal, Mammuthus primigenius [My Copy] Genome Research, Vol. 19, No. 8. (August 2009), pp. 1384-1392. by Fangqing Zhao, Ji Qi, Stephan C. Schuster posted to retrotransposition retrotransposon by dchughes on 2009-08-04 13:17:54 as along with 2 people operon aprasad
	L1 retrotransposition occurs mainly in embryogenesis and creates somatic mosaicism. [My Copy] Genes & development, Vol. 23, No. 11. (1 June 2009), pp. 1303-1312. by Hiroki Kano, Irene Godoy, Christine Courtney, et al.Melissa R. Vetter, George L. Gerton, Eric M. Ostertag, Haig H. Kazazian posted to embryogenesis human line1 retrotransposition by clearbluespring on 2009-06-22 13:59:22 as along with 2 people operon robfsouza
	The regulated retrotransposon transcriptome of mammalian cells [My Copy] Nature Genetics, Vol. 41, No. 5. (19 April 2009), pp. 563-571. by Geoffrey J. Faulkner, Yasumasa Kimura, Carsten O. Daub, et al.Shivangi Wani, Charles Plessy, Katharine M. Irvine, Kate Schroder, Nicole Cloonan, Anita L. Steptoe, Timo Lassmann, Kazunori Waki, Nadine Hornig, Takahiro Arakawa, Hazuki Takahashi, Jun Kawai, Alistair R. R. Forrest, Harukazu Suzuki, Yoshihide Hayashizaki, David A. Hume, Valerio Orlando, Sean M. Grimmond, Piero Carninci posted to mir retrogene retrotransposition retrotransposon retrovirus by dchughes on 2009-05-18 14:14:50 as along with 13 people and 2 groups inesdesantiago guhjy gdb galka8_diploma tonamswish renatomilani cisevol robfsouza mtagaya fenghezi jbhiatt natstreet antonkratz cis-regulatory-evolution BergmanLab
	mRNA Retrotransposition Coupled with 5' Inversion as a Possible Source of New Genes [My Copy] Mol Biol Evol, Vol. 26, No. 6. (1 June 2009), pp. 1405-1420. by Kenji K. Kojima, Norihiro Okada posted to l1 retrotransposition retrotransposon by dchughes on 2009-05-12 11:39:24 as along with 4 people operon djkt bpcusack clearbluespring
	Insertional polymorphisms: a new lease of life for endogenous retroviruses in human disease. [My Copy] Trends Genet (22 May 2007) by David Moyes, David J J. Griffiths, Patrick J J. Venables posted to herv retrotransposition retrovirus by dchughes on 2009-05-06 12:53:22 as along with 2 people and 1 group ryanraaum hpaces Bioinformatics
	Whole-genome association studies of sporadic amyotrophic lateral sclerosis: are retroelements involved? [My Copy] Trends in Molecular Medicine, Vol. 15, No. 4. (April 2009), pp. 148-158. by Jean-Luc Mougeot, Stephanie Richardson-Milazi, Benjamin R. Brooks posted to als retrogene retrotransposition retrotransposon retrovirus by dchughes on 2009-04-07 12:48:57 as
	Human L1 Retrotransposition: cis Preference versus trans Complementation [My Copy] Mol. Cell. Biol., Vol. 21, No. 4. (15 February 2001), pp. 1429-1439. by Wei Wei, Nicolas Gilbert, Siew L. Ooi, et al.Joseph F. Lawler, Eric M. Ostertag, Haig H. Kazazian, Jef D. Boeke, John V. Moran posted to line1 retrotransposition by clearbluespring on 2009-03-30 15:49:24 as
	Active Alu retrotransposons in the human genome [My Copy] Genome Research, Vol. 18, No. 12. (December 2008), pp. 1875-1883. by E. Andrew Bennett, Heiko Keller, Ryan E. Mills, et al.Steffen Schmidt, John V. Moran, Oliver Weichenrieder, Scott E. Devine posted to alu human-genome human-variation retrotransposition retrotransposon by dchughes on 2009-01-29 14:49:08 as along with 3 people and 1 group muumuulibrarian skoch3 operon Koch_Lab
	Unwitting hosts fall victim to imprinting. [My Copy] Epigenetics : official journal of the DNA Methylation Society, Vol. 3, No. 5. (September 2008), pp. 258-260. by R. B. McCole, R. J. Oakey posted to epigenetics host-gene imprinting retrogene retrotransposition by rschulz to the group Imprinting on 2008-12-19 08:27:08 as along with 1 group Epigenetics
	Transposable element fragments in protein-coding regions and their contributions to human functional proteins [My Copy] Gene, Vol. 401, No. 1-2. (15 October 2007), pp. 165-171. by Ming Wu, Li Li, Zhirong Sun posted to retrotransposition by andreasapostolides on 2008-12-04 21:30:08 as along with 5 people and 3 groups dchughes N0131826 idonaldson paulcartwright cisevol G4ID Genetics-of-Gambling BergmanLab
	Alu and LINE1 Distributions in the Human Chromosomes: Evidence of Global Genomic Organization Expressed in the Form of Power Laws [My Copy] Mol Biol Evol, Vol. 24, No. 11. (1 November 2007), pp. 2385-2399. by Diamantis Sellis, Astero Provata, Yannis Almirantis posted to retrotransposition by andreasapostolides on 2008-12-04 21:28:26 as along with 3 people and 1 group diamantis dchughes cisevol BergmanLab
	Repetitive sequences in complex genomes: structure and evolution. [My Copy] Annu Rev Genomics Hum Genet, Vol. 8 (2007), pp. 241-259. by J. Jurka, V. V. Kapitonov, O. Kohany, M. V. Jurka posted to retrotransposition by andreasapostolides on 2008-12-04 21:25:53 as along with 3 people operon YukaH dchughes
	The contribution of RNAs and retroposition to evolutionary novelties. [My Copy] Genetica, Vol. 118, No. 2-3. (July 2003), pp. 99-116. by J. Brosius posted to retrotransposition by andreasapostolides on 2008-12-04 21:24:03 as along with 2 people ushishir dchughes
	Alternative splicing of Alu exons--two arms are better than one. [My Copy] Nucleic Acids Res (14 February 2008) by Nurit Gal-Mark, Schraga Schwartz, Gil Ast posted to retrotransposition by andreasapostolides on 2008-12-04 21:21:43 as along with 3 people and 1 group zhouyu dchughes paulcartwright BergmanLab
	Mobile DNA elements in primate and human evolution [My Copy] American Journal of Physical Anthropology, Vol. 134, No. S45. (2007), pp. 2-19. by Jinchuan Xing, David J. Witherspoon, David A. Ray, Mark A. Batzer, Lynn B. Jorde posted to retrotransposition by andreasapostolides on 2008-12-04 21:20:47 as along with 6 people and 1 group operon dchughes timflutre ryanraaum urgi pradiptaray BergmanLab
	Using Alu Elements as Polyadenylation Sites: A Case of Retroposon Exaptation [My Copy] Mol Biol Evol, Vol. 26, No. 2. (1 February 2009), pp. 327-334. by Chongjian Chen, Takeshi Ara, Daniel Gautheret posted to retrotransposition by andreasapostolides on 2008-12-04 21:20:00 as along with 3 people operon rschulz dchughes
	The necessary junk: new functions for transposable elements [My Copy] Hum. Mol. Genet., Vol. 16, No. R2. (15 October 2007), pp. R159-167. by Alysson R. Muotri, Maria C. N. Marchetto, Nicole G. Coufal, Fred H. Gage posted to retrotransposition by andreasapostolides on 2008-12-04 21:18:42 as along with 7 people and 2 groups operon TimRooney sbottani dchughes gpappas RaquelSL ArtemPankin BergmanLab Khavkin's lab
	Where Do Introns Come From? [My Copy] PLoS Biology, Vol. 6, No. 11. (1 November 2008), e283. by Francesco Catania, Michael Lynch posted to retrotransposition by andreasapostolides on 2008-12-04 21:13:14 as along with 13 people and 3 groups azazello GustavoLacerda stajich myzhang alipi Zephyrus natstreet druvus dchughes clearbluespring djkt barry xianjun Mycology R.E.A.D McCammon
	Retrotransposition as a Source of New Promoters. [My Copy] Molecular Biology and Evolution, Vol. 25, No. 6. (25 March 2008), pp. 1231-1238. by Kohji Okamura, Kenta Nakai posted to alternative evolution genome kohji promoter retrotransposition transcription tss by Glires on 2008-12-04 08:11:00 as along with 4 people and 1 group rschulz cisevol clearbluespring inesdesantiago cis-regulatory-evolution
	Beyond DNA: RNA Editing and Steps Toward Alu Exonization in Primates [My Copy] Journal of Molecular Biology, Vol. 382, No. 3. (10 October 2008), pp. 601-609. by Maren Möller-Krull, Anja Zemann, Christian Roos, Jürgen Brosius, Jürgen Schmitz posted to alu alu-exonisation exonisation retrotransposition retrotransposon rna-editing by dchughes on 2008-09-16 15:42:38 as
	Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3'-end of genes [My Copy] Nucl. Acids Res., Vol. 36, No. 17. (30 August 2008), pp. gkn540-5590. by Ju Y. Lee, Zhe Ji, Bin Tian posted to alternative evolution polyadenylation retrotransposition retrotransposon by rschulz on 2008-09-03 16:16:02 as along with 2 people operon inesdesantiago
	Core-SINE blocks comprise a large fraction of monotreme genomes; implications for vertebrate chromosome evolution. [My Copy] Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology, Vol. 15, No. 8. (2007), pp. 975-984. by P. J. Kirby, I. K. Greaves, E. Koina, P. D. Waters, J. A. Marshall Graves posted to core-sine monotreme retrotransposition retrotransposon by dchughes on 2008-08-11 14:04:24 as
	Newly discovered young CORE-SINEs in marsupial genomes. [My Copy] Gene, Vol. 407, No. 1-2. (15 January 2008), pp. 176-185. by M. Munemasa, M. Nikaido, H. Nishihara, S. Donnellan, C. C. Austin, N. Okada posted to core-sine marsupial retrotransposition retrotransposon sine by dchughes on 2008-08-11 14:02:54 as along with 1 person FMoncini
	Ancient Exaptation of a CORE-SINE Retroposon into a Highly Conserved Mammalian Neuronal Enhancer of the Proopiomelanocortin Gene. [My Copy] PLoS Genet, Vol. 3, No. 10. (5 October 2007) by Andrea M M. Santangelo, Flávio S J S. de Souza, Lucía F F. Franchini, Viviana F F. Bumaschny, Malcolm J J. Low, Marcelo Rubinstein posted to core-sine neuroscience retrotransposition retrotransposon sine by dchughes on 2008-08-11 12:18:22 as along with 3 people and 2 groups timflutre gpappas cisevol cis-regulatory-evolution BergmanLab
	Extensive variation between inbred mouse strains due to endogenous L1 retrotransposition [My Copy] Genome Res., Vol. 18, No. 6. (1 June 2008), pp. 869-880. by Keiko Akagi, Jingfeng Li, Robert M. Stephens, Natalia Volfovsky, David E. Symer posted to genome-evolution mouse mouse-genome retrotransposition by dchughes on 2008-07-04 13:36:40 as
	Do Alu repeats shape the primate transcriptome? [My Copy] Genome Biology, Vol. 9, No. 2. (2008) by Araxi Urrutia, Leandro B. Ocana, Laurence Hurst posted to alu genome-evolution retrotransposition retrotransposon by dchughes on 2008-05-19 17:31:45 as along with 4 people and 2 groups djkt biomcgary cisevol bpcusack cis-regulatory-evolution BergmanLab
	Mammalian non-LTR retrotransposons: For better or worse, in sickness and in health [My Copy] Genome Research, Vol. 18, No. 3. (1 March 2008), pp. 343-358. by Victoria P. Belancio, Dale J. Hedges, Prescott Deininger posted to retrotransposition retrotransposon by dchughes on 2008-05-14 14:41:48 as along with 2 people operon guhjy
	Chromosomal Gene Movements Reflect the Recent Origin and Biology of Therian Sex Chromosomes [My Copy] PLoS Biology, Vol. 6, No. 4. (1 April 2008), e80. by Lukasz Potrzebowski, Nicolas Vinckenbosch, Ana C. Marques, Frédéric Chalmel, Bernard Jégou, Henrik Kaessmann posted to chrx evolution msci retrotransposition sex by rschulz on 2008-04-14 08:49:58 as along with 2 people bpcusack clearbluespring
	RTAnalyzer: a web application for finding new retrotransposons and detecting L1 retrotransposition signatures. [My Copy] Nucleic acids research, Vol. 35, No. Web Server issue. (July 2007) by J. F. Lucier, J. Perreault, J. F. Noël, G. Boire, J. P. Perreault posted to retrotransposition rtanalyzer tool by rschulz on 2008-04-11 12:38:01 as along with 1 person clearbluespring
	Epigenetic interactions between transposons and genes: lessons from plants. [My Copy] Curr Opin Genet Dev (11 March 2008) by Cliff Weil, Rob Martienssen posted to epigenetics plant retrotransposition retrotransposon review transposon by rschulz on 2008-03-17 08:37:14 as along with 1 person jiayi369
	Fixation of conserved sequences shapes human intron size and influences transposon-insertion dynamics. [My Copy] Trends Genet, Vol. 21, No. 9. (September 2005), pp. 484-488. by M. Sironi, G. Menozzi, G. P. Comi, N. Bresolin, R. Cagliani, U. Pozzoli posted to intron intron-size retrotransposition retrotransposon by dchughes on 2008-03-06 12:14:11 as along with 2 people and 1 group paulcartwright FMoncini BergmanLab
	Insertion of an intracisternal A particle retrotransposon element in plasma membrane calcium ATPase 2 gene attenuates its expression and produces an ataxic phenotype in joggle mutant mice [My Copy] Gene, Vol. 411, No. 1-2. (31 March 2008), pp. 94-102. by Xiao-Yang Sun, Zi-Yan Chen, Yoshitaka Hayashi, et al.Yasuhiko Kanou, Yoshiko Takagishi, Sen-Ichi Oda, Yoshiharu Murata posted to mutation retrotransposition retrotransposon by dchughes on 2008-02-29 12:53:05 as
	The impact of multiple splice sites in human L1 elements [My Copy] Gene, Vol. 411, No. 1-2. (31 March 2008), pp. 38-45. by V. P. Belancio, A. M. Roy-Engel, P. Deininger posted to l1 line retrotransposition retrotransposon splicing by dchughes on 2008-02-29 12:50:21 as along with 1 person and 1 group paulcartwright BergmanLab

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sine	84
retrotransposon	58
l1	39
alu	35
line	31
retrogene	29
mir	27
transposon	20
retrovirus	17
transposition	16
repetitive	15
erv	12
gypsy	12
imprinting	12
pseudogene	12
epigenetics	11
herv	10
gag	9
dog	8
evolution	8
expression	8
rnai	8
exonisation	7
genome	7
ageing	6
arc	6
avian	6
core-sine	6
dog-genome	6
fish	6
human	6
insertional-mutagenesis	6
mammal	6
mirna	6
molecular-phylogenetics	6
review	6
sirna	6
sperm	6
testis	6
ty3gypsy	6
alu-exonisation	5
exaptation	5
new-genes	5
endogenous-retrovirus	4
fgf4	4
forensic	4
host-gene	4
intron-size	4
leg-length	4
marsupial	4
neuron	4
neuroscience	4
primates	4
alu-recombination-mediated	3
axon	3
chicken-genomics	3
cpg	3
cr1	3
de-novo-gene-evolution	3
evolutionary-genomics	3
exon-shuffling	3
forensic-animal	3
forensic-genomics	3
fusion-genes	3
gabaa-receptor	3
intron-loss	3
marsupial-mammal	3
ogre	3
oogenesis	3
ovary	3
p53	3
sequence	3
somatic-mosaicism	3
sperm-morphology	3
spermatogenesis	3
syncytin	3
alternative	2
bone	2
chondrodysplasia	2
chrx	2
development	2
dna	2
gene	2
gene_duplication	2
genome-evolution	2
human-variation	2
intron	2
line1	2
methylation	2
mouse	2
perspective	2
promoter	2
cancer	1
embryogenesis	1
function	1
germline	1
repetitive_sequence	1
rna-editing	1
silencing	1
tss	1

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