Tag rev_ref [38 articles] Export

Recent papers classified by the tag rev_ref.

	Peptidomimetics, a synthetic tool of drug discovery [My Copy] Current Opinion in Chemical Biology, Vol. 12, No. 3. (June 2008), pp. 292-296. by Josef Vagner, Hongchang Qu, Victor J. Hruby posted to drug-design peptides review rev_ref by Evangelia on 2008-05-16 10:40:38 as along with 1 person jjurban
	KEGG: Kyoto Encyclopedia of Genes and Genomes [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 27-30. by Minoru Kanehisa, Susumu Goto posted to database pathways rev_ref by Evangelia on 2008-05-14 12:15:10 as along with 20 people mauriceccy akshayk jeremymiller cgaugain VGreiff karinlag sgoetz namunet csanford dquest j3xucite fisherp koerner ruvido noby naegele katerinakal grottenolm natstreet jerome_ucsf_slb
	Proteomic Screen Finds pSer/pThr-Binding Domain Localizing Plk1 to Mitotic Substrates [My Copy] Science, Vol. 299, No. 5610. (21 February 2003), pp. 1228-1231. by Andrew E. Elia, Lewis C. Cantley, Michael B. Yaffe posted to peptides phospho_peptides rev_ref by Evangelia on 2008-05-13 09:44:57 as
	High-Throughput Screen for Small Molecule Inhibitors of Mint1-PDZ Domains [My Copy] ASSAY and Drug Development Technologies, Vol. 5, No. 6. (2007), pp. 769-784. by Xuesong Chen, Jamie C. Longgood, Carolyn Michnoff, Shuguang Wei, Doug E. Frantz, Llya Bezprozvanny posted to chemical_peptide peptides rev_ref by Evangelia on 2008-05-12 15:26:08 as
	A curated compendium of phosphorylation motifs [My Copy] Nature Biotechnology, Vol. 25, No. 3., pp. 285-286. by Ramars Amanchy, Balamurugan Periaswamy, Suresh Mathivanan, Raghunath Reddy, Sudhir G. Tattikota, Akhilesh Pandey posted to database peptides phospho_peptides rev_ref by Evangelia on 2008-05-12 14:59:36 as along with 5 people hryk coela neils cjeans alwinpremanand
	ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro [My Copy] Nucl. Acids Res., Vol. 30, No. 1. (1 January 2002), pp. 200-202. by Vadim P. Valuev, Dmitry A. Afonnikov, Mikhail P. Ponomarenko, Luciano Milanesi, Nikolay A. Kolchanov posted to database peptides rev_ref by Evangelia on 2008-05-12 14:50:13 as
	A human protein-protein interaction network: a resource for annotating the proteome. [My Copy] Cell, Vol. 122, No. 6. (23 September 2005), pp. 957-968. by Ulrich Stelzl, Uwe Worm, Maciej Lalowski, et al.Christian Haenig, Felix H. Brembeck, Heike Goehler, Martin Stroedicke, Martina Zenkner, Anke Schoenherr, Susanne Koeppen, Jan Timm, Sascha Mintzlaff, Claudia Abraham, Nicole Bock, Silvia Kietzmann, Astrid Goedde, Engin Toksöz, Anja Droege, Sylvia Krobitsch, Bernhard Korn, Walter Birchmeier, Hans Lehrach, Erich E. Wanker posted to protein protein-interaction-networks rev_ref by Evangelia on 2008-05-12 14:39:13 as along with 11 people chica aelef biozhang2001 dragonrez kuhn textoris Schmidtc maryee eukfn pattisyang antonkratz
	SMART, a simple modular architecture research tool: Identification of signaling domains [My Copy] Proceedings of the National Academy of Sciences, Vol. 95, No. 11. (26 May 1998), pp. 5857-5864. by Jorg Schultz, Frank Milpetz, Peer Bork, Chris P. Ponting posted to domain rev_ref by Evangelia on 2008-05-12 14:29:33 as along with 3 people hplatero bicko jteyra
	Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3635-3641. by John C. Obenauer, Lewis C. Cantley, Michael B. Yaffe posted to peptides phospho_peptides rev_ref by Evangelia on 2008-05-12 14:13:27 as along with 3 people chica mloewer neils
	Insights into COPII Coat Nucleation from the Structure of Sec23-Sar1 Complexed with the Active Fragment of Sec31 [My Copy] Developmental Cell, Vol. 13, No. 5. (6 November 2007), pp. 635-645. by Xiping Bi, Joseph D. Mancias, Jonathan Goldberg posted to example peptides rev_ref by Evangelia on 2008-05-12 14:10:26 as
	The 20 years of PROSITE [My Copy] Nucl. Acids Res., Vol. 36, No. Database issue. (14 November 2007), gkm977. by Nicolas Hulo, Amos Bairoch, Virginie Bulliard, et al.Lorenzo Cerutti, Beatrice A. Cuche, Edouard Castro, Corinne Lachaize, Petra S. Langendijk-Genevaux, Christian J. A. Sigrist posted to database peptides rev_ref by Evangelia on 2008-05-12 14:05:29 as along with 7 people nlapalu Zoltan_Barczikay fbristow ojabado reyez dullhunk hplatero
	Minimotif Miner: a tool for investigating protein function [My Copy] Nature Methods, Vol. 3, No. 3. (17 February 2006), pp. 175-177. by Sudha Balla, Vishal Thapar, Snigdha Verma, et al.Thaibinh Luong, Tanaz Faghri, Chun-Hsi Huang, Sanguthevar Rajasekaran, Jacob, Jessica H. Shinn, William A. Mohler, Mark W. Maciejewski, Michael R. Gryk, Bryan Piccirillo, Stanley R. Schiller, Martin R. Schiller posted to motifs peptide rev_ref by Evangelia on 2008-05-12 13:59:44 as along with 2 people and 1 group okarsligil j3xucite Bioinformatics
	Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins. [My Copy] BMC Bioinformatics, Vol. 5 (22 June 2004) by F. Diella, S. Cameron, C. Gemünd, et al.R. Linding, A. Via, B. Kuster, T. Sicheritz-Pontén, N. Blom, T. J. Gibson posted to database peptides phospho_peptides rev_ref by Evangelia on 2008-05-12 13:58:22 as along with 2 people chad_davis renatomilani
	Small-molecule MDM2 antagonists reveal aberrant p53 signaling in cancer: implications for therapy. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 6. (7 February 2006), pp. 1888-1893. by C. Tovar, J. Rosinski, Z. Filipovic, et al.B. Higgins, K. Kolinsky, H. Hilton, X. Zhao, B. T. Vu, W. Qing, K. Packman, O. Myklebost, D. C. Heimbrook, L. T. Vassilev posted to chemical_peptide peptides rev_ref by Evangelia on 2008-05-12 13:49:57 as along with 2 people yeastyboy sbiring
	In Vivo Activation of the p53 Pathway by Small-Molecule Antagonists of MDM2 [My Copy] Science, Vol. 303, No. 5659. (6 February 2004), pp. 844-848. by Lyubomir T. Vassilev, Binh T. Vu, Bradford Graves, et al.Daisy Carvajal, Frank Podlaski, Zoran Filipovic, Norman Kong, Ursula Kammlott, Christine Lukacs, Christian Klein, Nader Fotouhi, Emily A. Liu posted to p53 peptides rev_ref by Evangelia on 2008-05-12 13:48:49 as along with 2 people ubcg08l sbiring
	Enfuvirtide: the first therapy to inhibit the entry of HIV-1 into host CD4 lymphocytes [My Copy] Nat Rev Drug Discov, Vol. 3, No. 3. (March 2004), pp. 215-225. by Tom Matthews, Miklos Salgo, Michael Greenberg, Jain Chung, Ralph Demasi, Dani Bolognesi posted to drug-design peptides rev_ref by Evangelia on 2008-05-12 12:01:45 as
	Inhibition of the EGF receptor by binding of MIG6 to an activating kinase domain interface [My Copy] Nature, Vol. 450, No. 7170., pp. 741-744. by Xuewu Zhang, Kerry A. Pickin, Ron Bose, Natalia Jura, Philip A. Cole, John Kuriyan posted to domain kinases peptides rev_ref by Evangelia on 2008-05-12 10:59:35 as
	Podophyllotoxin directly binds a hinge domain in E2 of HPV and inhibits an E2/E7 interaction in vitro [My Copy] Bioorganic & Medicinal Chemistry, Vol. In Press, Corrected Proof by Takeki Saitoh, Kouji Kuramochi, Takahiko Imai, et al.Kei-Ichi Takata, Masahide Takehara, Susumu Kobayashi, Kengo Sakaguchi, Fumio Sugawara posted to application chemical_peptide hpv peptides rev_ref by Evangelia on 2008-05-12 10:16:00 as
	A correlated motif approach for finding short linear motifs from protein interaction networks. [My Copy] BMC bioinformatics, Vol. 7 (16 November 2006), 502. by S. H. Tan, W. Hugo, W. K. Sung, S. K. Ng posted to motifs networks peptides protein-interaction-networks rev_ref by Evangelia on 2008-05-11 15:04:56 as along with 1 person wowalz
	Systematic discovery of in vivo phosphorylation networks. [My Copy] Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426. by Rune Linding, Lars Juhl J. Jensen, Gerard J. Ostheimer, et al.Marcel A. van Vugt, Claus Jørgensen, Ioana M. Miron, Francesca Diella, Karen Colwill, Lorne Taylor, Kelly Elder, Pavel Metalnikov, Vivian Nguyen, Adrian Pasculescu, Jing Jin, Jin Gyoon G. Park, Leona D. Samson, James R. Woodgett, Robert B. Russell, Peer Bork, Michael B. Yaffe, Tony Pawson posted to networks peptides phospho_peptides protein-interaction-networks rev_ref by Evangelia on 2008-05-11 14:44:13 as along with 21 people and 2 groups rsaito jaimie nzm nedwards MatthiasReimann ptrobajo guhjy skhadar julius zwang cdppublications lp2 psique robrussell snowcrash larsjuhljensen renatomilani carlk daed chad_davis bouncingbudha SysbioMPI-TCells Durbin group
	PepBank - a database of peptides based on sequence text mining and public peptide data sources [My Copy] BMC Bioinformatics, Vol. 8 (01 August 2007), 280. by Timur Shtatland, Daniel Guettler, Misha Kossodo, Misha Pivovarov, Ralph Weissleder posted to database peptides rev_ref by Evangelia on 2008-05-11 13:00:23 as along with 1 person guhjy
	A conserved motif in Argonaute-interacting proteins mediates functional interactions through the Argonaute PIWI domain [My Copy] Nature Structural & Molecular Biology, Vol. 14, No. 10. (23 September 2007), pp. 897-903. by Susanne Till, Erwan Lejeune, Rolf Thermann, et al.Miriam Bortfeld, Michael Hothorn, Daniel Enderle, Constanze Heinrich, Matthias W. Hentze, Andreas G. Ladurner posted to ago interactions motifs peptides rev_ref by Evangelia on 2008-05-07 16:07:45 as
	Towards a proteome-scale map of the human protein-protein interaction network [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1173-1178. by Jean-Francois Rual, Kavitha Venkatesan, Tong Hao, et al.Tomoko Hirozane-Kishikawa, Amelie Dricot, Ning Li, Gabriel F. Berriz, Francis D. Gibbons, Matija Dreze, Nono Ayivi-Guedehoussou, Niels Klitgord, Christophe Simon, Mike Boxem, Stuart Milstein, Jennifer Rosenberg, Debra S. Goldberg, Lan V. Zhang, Sharyl L. Wong, Giovanni Franklin, Siming Li, Joanna S. Albala, Janghoo Lim, Carlene Fraughton, Estelle Llamosas, Sebiha Cevik, Camille Bex, Philippe Lamesch, Robert S. Sikorski, Jean Vandenhaute, Huda Y. Zoghbi, Alex Smolyar, Stephanie Bosak, Reynaldo Sequerra, Lynn Doucette-Stamm, Michael E. Cusick, David E. Hill, Frederick P. Roth, Marc Vidal posted to interaction netwrk rev_ref use by Evangelia on 2008-03-25 19:15:20 as along with 21 people and 2 groups yaredo fesousa aelef dragonrez kuhn okarsligil jfr lyongu maryee benny wnpx yoh noano gurkanbebek mbeautru eukfn grahamc lpfernandes antonkratz csanford ksiek Complex Networks Bioinformatics
	A careful disorderliness in the proteome: sites for interaction and targets for future therapies. [My Copy] FEBS letters, Vol. 582, No. 8. (9 April 2008), pp. 1271-1275. by R. B. Russell, T. J. Gibson posted to disorder review rev_ref use by Evangelia on 2008-03-19 08:32:31 as along with 7 people niallhaslam cat_hutchinson68 guhjy robrussell higueruelo kluck chad_davis
	Protein-protein interaction through [beta]-strand addition [My Copy] Trends in Biochemical Sciences, Vol. 31, No. 8. (August 2006), pp. 436-444. by Han Remaut, Gabriel Waksman posted to beta-augmentation interaction peptides protein-protein rev_ref by Evangelia on 2007-10-01 18:50:55 as
	DILIMOT: discovery of linear motifs in proteins. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by V. Neduva, R. B. Russell posted to linear motifs peptides prediction protein rev_ref by Evangelia on 2007-10-01 18:43:23 as
	Peptides mediating interaction networks: new leads at last. [My Copy] Curr Opin Biotechnol, Vol. 17, No. 5. (October 2006), pp. 465-471. by V. Neduva, R. B. Russell posted to binding interaction networks peptides protein rev_ref by Evangelia on 2007-10-01 18:38:24 as along with 2 people zdai chad_davis
	A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. [My Copy] Science, Vol. 295, No. 5553. (11 January 2002), pp. 321-324. by A. H. Tong, B. Drees, G. Nardelli, et al.G. D. Bader, B. Brannetti, L. Castagnoli, M. Evangelista, S. Ferracuti, B. Nelson, S. Paoluzi, M. Quondam, A. Zucconi, C. W. Hogue, S. Fields, C. Boone, G. Cesareni posted to computational domains experimental networks pathways peptides prediction rev_ref y2h by Evangelia on 2007-10-01 18:31:35 as along with 5 people tomhebbron chad_davis balajis roys carlk
	DOMINO: a database of domain-peptide interactions. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by A. Ceol, A. Chatr-aryamontri, E. Santonico, R. Sacco, L. Castagnoli, G. Cesareni posted to binding database domains interaction peptides rev_ref by Evangelia on 2007-10-01 18:30:20 as along with 1 person guhjy
	ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3625-3630. by Pål Puntervoll, Rune Linding, Christine Gemünd, et al.Sophie Chabanis-Davidson, Morten Mattingsdal, Scott Cameron, David M. Martin, Gabriele Ausiello, Barbara Brannetti, Anna Costantini, Fabrizio Ferrè, Vincenza Maselli, Allegra Via, Gianni Cesareni, Francesca Diella, Giulio Superti-Furga, Lucjan Wyrwicz, Chenna Ramu, Caroline McGuigan, Rambabu Gudavalli, Ivica Letunic, Peer Bork, Leszek Rychlewski, Bernhard Küster, Manuela Helmer-Citterich, William N. Hunter, Rein Aasland, Toby J. Gibson posted to database linear motifs peptides prediction protein rev_ref by Evangelia on 2007-10-01 18:28:15 as along with 3 people chica phoenixzxl chad_davis
	Bioinformatic discovery of novel bioactive peptides [My Copy] Nat Chem Biol, Vol. 3, No. 2. (February 2007), pp. 108-112. by Richard J. Edwards, Niamh Moran, Marc Devocelle, et al.Aoife Kiernan, Gerardene Meade, William Signac, Martina Foy, Stephen D. Park, Eimear Dunne, Dermot Kenny, Denis C. Shields posted to binding bioinformatics computational interaction peptides prediction rev_ref by Evangelia on 2007-10-01 18:26:47 as along with 2 people niallhaslam zwang
	SLiMDisc: short, linear motif discovery, correcting for common evolutionary descent. [My Copy] Nucleic Acids Res, Vol. 34, No. 12. (2006), pp. 3546-3554. by N. E. Davey, D. C. Shields, R. J. Edwards posted to conservation linear motifs peptides prediction rev_ref by Evangelia on 2007-10-01 18:23:27 as
	SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family [My Copy] Journal of Molecular Biology, Vol. 298, No. 2. (28 April 2000), pp. 313-328. by Barbara Brannetti, Allegra Via, Gianluca Cestra, Gianni Cesareni, Manuela H. Citterich posted to algorithm bioinformatics complexes computational domains motifs prediction rev_ref sh3 specificity structure by Evangelia on 2007-10-01 17:58:07 as along with 2 people carlescorbi biehl
	Proline-Rich Regions in Transcriptional Complexes: Heading in Many Directions [My Copy] Sci. STKE, Vol. 2007, No. 369. (16 January 2007), pe1. by Victor Neduva, Robert B. Russell posted to biology interaction linear motifs pathways proline-rich rev_ref signaling by Evangelia on 2007-10-01 17:26:42 as
	Screening for peptide drugs from the natural repertoire of biodiverse protein folds [My Copy] Nature Biotechnology, Vol. 24, No. 2. (07 February 2006), pp. 177-183. by Paul M. Watt posted to domains drug-design interaction peptides rev_ref structure by Evangelia on 2007-10-01 17:02:54 as along with 1 person and 1 group okarsligil Bioinformatics
	Intrinsically unstructured proteins and their functions [My Copy] Nature Reviews Molecular Cell Biology, Vol. 6, No. 3. (01 March 2005), pp. 197-208. by H. Jane Dyson, Peter E. Wright posted to disorder domains protein review rev_ref structure use by Evangelia on 2007-10-01 15:13:05 as along with 5 people danieladirndorfer yxue hsekiguc cactus paulschlesinger
	Signaling through scaffold, anchoring, and adaptor proteins. [My Copy] Science, Vol. 278, No. 5346. (19 December 1997), pp. 2075-2080. by T. Pawson, J. D. Scott posted to docking domains interaction linear motifs pathways peptides rev_ref signaling by Evangelia on 2007-10-01 13:03:51 as along with 1 person and 1 group pdelosri EPFL_SB_ITP_LBS
	Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks. [My Copy] PLoS Biol, Vol. 3, No. 12. (15 November 2005) by Victor Neduva, Rune Linding, Isabelle Su-Angrand, et al.Alexander Stark, Federico de D. Masi, Toby J J. Gibson, Joe Lewis, Luis Serrano, Robert B B. Russell posted to bioinformatics biology computational motifs peptides prediction rev_ref by Evangelia on 2007-10-01 12:31:24 as along with 10 people and 1 group rklancer okarsligil bicko Ayest xwbcn drastic ezotenko grahamc oelemento chad_davis Bioinformatics

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peptides	29
motifs	10
database	8
interaction	8
prediction	7
domains	6
linear	5
phospho_peptides	5
protein	5
computational	4
networks	4
pathways	4
binding	3
bioinformatics	3
chemical_peptide	3
drug-design	3
protein-interaction-networks	3
review	3
structure	3
use	3
biology	2
disorder	2
domain	2
signaling	2
ago	1
algorithm	1
application	1
beta-augmentation	1
complexes	1
conservation	1
docking	1
example	1
experimental	1
hpv	1
interactions	1
kinases	1
netwrk	1
p53	1
peptide	1
proline-rich	1
protein-protein	1
sh3	1
specificity	1
y2h	1

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