Tag reverse_engineering [71 articles] Export

Recent papers classified by the tag reverse_engineering.

	Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1640-1647. by Nicola Soranzo, Ginestra Bianconi, Claudio Altafini posted to verification reverse_engineering gene_networks by meanerelk on 2009-12-04 05:49:37 as along with 6 people ptrobajo fastjoe23 statnet heliopais roys tmmurali
	Discerning static and causal interactions in genome-wide reverse engineering problems [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. 1510-1515. by Mattia Zampieri, Nicola Soranzo, Claudio Altafini posted to verification reverse_engineering genome by meanerelk on 2009-12-04 05:48:14 as along with 7 people dolchan rdiaz roys guhjy tmmurali verdicchio balicea
	Reverse Engineering of Biological Complexity [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1664-1669. by Marie E. Csete, John C. Doyle posted to reverse_engineering modularity lock-in evolution complexity by tomhebbron on 2009-11-18 18:17:09 as along with 24 people and 6 groups yyfwuhan abhishek_tiwari jdscheff jporternj Scis0000002 reyez camster snuppepuppan barry monod lyongu wnpx ddahlem dullhunk adepace javierFellow livingthingdan kevinemamy anatiferous timflutre dbilar jrbanga edvin bayesian dbk-lab structural_bioinformatics Bioinformatics EisenLab livingthing clab
	An Approach for Reversely Generating Hierarchical UML Statechart Diagrams [My Copy] Fuzzy Systems and Knowledge Discovery (2006), pp. 434-437. by Hua Chu, Qingshan Li, Shenming Hu, Ping Chen posted to uml statecharts reverse_engineering modeling by ingo on 2009-11-09 21:46:18 as along with 1 person leonardo
	A boosting approach to structure learning of graphs with and without prior knowledge [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2929-2936. by Shahzia Anjum, Arnaud Doucet, Chris C. Holmes posted to reverse_engineering functional_linkage_network by tmmurali on 2009-11-06 18:17:35 as along with 6 people hughitt1 fastjoe23 TRHvidsten rdiaz phoenixzxl frohike
	Systems Biology Strikes Gold [My Copy] Cell, Vol. 137, No. 1. (3 April 2009), pp. 24-26. by Diogo M. Camacho, James J. Collins posted to reverse_engineering network_inference by Borelli on 2009-10-19 15:04:09 as along with 2 people abhishek_tiwari renatomilani
	Googling Food Webs: Can an Eigenvector Measure Species' Importance for Coextinctions? [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (4 September 2009), e1000494. by Stefano Allesina, Mercedes Pascual posted to species_extinction reverse_engineering relationships intractable_problem google food_webs extinction_risk algorithm by phig on 2009-09-20 18:04:12 as along with 6 people and 1 group jaia peterso maren michaelbarton neils thomaskelder MCB
	Incorporating Existing Network Information into Gene Network Inference [My Copy] PLoS ONE, Vol. 4, No. 8. (27 August 2009), e6799. by Scott Christley, Qing Nie, Xiaohui Xie posted to reverse_engineering by tmmurali on 2009-09-02 23:20:24 as along with 5 people rdiaz coffeerv TRHvidsten installe frohike
	A generic library for GUI reasoning and testing [My Copy] In SAC '09: Proceedings of the 2009 ACM symposium on Applied Computing (2009), pp. 121-128. by João C. Silva, João Saraiva, José C. Campos posted to gui programming reverse_engineering by pnpo on 2009-07-05 17:53:55 as
	Recognizing design decisions in programs [My Copy] Software, IEEE In Software, IEEE, Vol. 7, No. 1. (1990), pp. 46-54. by S. Rugaber, S. B. Ornburn, R. J. Leblanc posted to program_comprehension reverse_engineering by pnpo on 2009-06-29 22:48:22 as along with 1 person andreff
	KELLER: estimating time-varying interactions between genes [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i128-136. by Le Song, Mladen Kolar, Eric P. Xing posted to reverse_engineering by tmmurali on 2009-06-10 21:10:07 as along with 7 people and 1 group rdiaz arne yaredo leemond31 roys dswan mstumpf Bioinformatics
	Listen to Genes: Dealing with Microarray Data in the Frequency Domain [My Copy] PLoS ONE, Vol. 4, No. 4. (6 April 2009), e5098. by Jianfeng Feng, Dongyun Yi, Ritesh Krishna, Shuixia Guo, Vicky Buchanan-Wollaston posted to actex reverse_engineering by tmmurali on 2009-04-13 04:53:01 as along with 2 people Borelli rdiaz
	Reverse Engineering Time Discrete Finite Dynamical Systems: A Feasible Undertaking? [My Copy] PLoS ONE, Vol. 4, No. 3. (19 March 2009), e4939. by Edgar Delgado-Eckert posted to actex reverse_engineering by tmmurali on 2009-03-25 20:40:54 as along with 1 person rdiaz
	Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (03 November 2008), 467. by Weijun Luo, Kurt Hankenson, Peter Woolf posted to microarray_data reverse_engineering by msuarezdiez on 2009-03-18 09:45:52 as along with 8 people sotacam kemalpak jfr pengchy lptolik druvus isimpson sjung
	A copula method for modeling directional dependence of genes. [My Copy] BMC bioinformatics, Vol. 9 (01 May 2008), 225. by Jong-Min M. Kim, Yoon-Sung S. Jung, Engin A. Sungur, Kap-Hoon H. Han, Changyi Park, Insuk Sohn posted to reverse_engineering by tmmurali on 2008-09-27 03:46:52 as along with 5 people frohike donalddunbar bertelsen guhjy chodar
	Network inference using informative priors [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 38. (2008), pp. 14313-14318. by Sach Mukherjee, Terence P. Speed posted to reverse_engineering by tmmurali on 2008-09-24 02:58:16 as along with 10 people and 1 group zufar bertelsen ggallone guhjy Borelli ptrobajo jfr markstoehr stringertheory roys Jarman Lab
	Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 50. (12 December 2006), pp. 19033-19038. by Timothy R. Lezon, Jayanth R. Banavar, Marek Cieplak, Amos Maritan, Nina V. Fedoroff posted to reverse_engineering by tmmurali on 2008-09-01 19:49:30 as along with 8 people mjoach TRHvidsten yaredo jfr aswin hmk iris_2001 macavity1g
	Embedding mRNA Stability in Correlation Analysis of Time-Series Gene Expression Data [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000141. by Lorenzo Farina, Alberto De Santis, Samanta Salvucci, Giorgio Morelli, Ida Ruberti posted to reverse_engineering by tmmurali on 2008-08-30 14:00:47 as along with 1 person ptrobajo
	Geometric interpretation of gene coexpression network analysis. [My Copy] PLoS computational biology, Vol. 4, No. 8. (15 August 2008), e1000117. by Steve Horvath, Jun Dong posted to network-models reverse_engineering by tmmurali on 2008-08-30 13:51:43 as along with 22 people jeremymiller zufar dolchan sficklin isimpson rdiaz guhjy cswinburne jfr ptrobajo pengchy nolodie druvus aramesh2 kengg roys Ema Borelli Totobox AbnerCYH davidchavalarias caseybrown
	How to infer gene networks from expression profiles. [My Copy] Molecular systems biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted to reverse_engineering by tmmurali on 2008-08-12 16:15:04 as along with 38 people and 3 groups Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus antonkratz phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia Jarman Lab EBI-regulation Plantandetc
	An empirical Bayes approach to inferring large-scale gene association networks. [My Copy] Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 754-764. by J. Schäfer, K. Strimmer posted to reverse_engineering by tmmurali on 2008-08-07 20:24:55 as along with 5 people and 1 group eldan gangli wnpx Ao_Li2007 StatAnika tulip
	Discovering Use Cases from Source Code using the Branch-Reserving Call Graph [My Copy] In APSEC '03: Proceedings of the Tenth Asia-Pacific Software Engineering Conference Software Engineering Conference (2003) by Tao Qin, Lu Zhang, Zhiying Zhou, Dan Hao, Jiasu Sun posted to code_design_mapping reverse_engineering traceability by alphabetagamma on 2008-07-15 04:15:30 as
	Enhancing an Artefact Management System with Traceability Recovery Features [My Copy] In ICSM '04: Proceedings of the 20th IEEE International Conference on Software Maintenance (2004), pp. 306-315. by Andrea De Lucia, Fausto Fasano, Rocco Oliveto, Genoveffa Tortora posted to reverse_engineering traceability by alphabetagamma on 2008-07-15 04:12:00 as
	Design-code traceability for object-oriented systems [My Copy] Ann. Softw. Eng., Vol. 9, No. 1-4. (2000), pp. 35-58. by Giulio Antoniol, Bruno Caprile, Alessandra Potrich, Paolo Tonella posted to code_design_mapping reverse_engineering traceability by alphabetagamma on 2008-07-15 04:09:01 as
	Ranking Significance of Software Components Based on Use Relations [My Copy] IEEE Trans. Softw. Eng., Vol. 31, No. 3. (March 2005), pp. 213-225. by Makoto Matsushita posted to function_ranking reverse_engineering by alphabetagamma on 2008-07-15 03:32:08 as along with 1 person akuhn
	Increasing the Power to Detect Causal Associations by Combining Genotypic and Expression Data in Segregating Populations [My Copy] PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e69. by Jun Zhu, Matthew C. Wiener, Chunsheng Zhang, et al.Arthur Fridman, Eric Minch, Pek Y. Lum, Jeffrey R. Sachs, Eric E. Schadt posted to actex data_integration reverse_engineering by tmmurali on 2008-07-07 21:18:33 as along with 8 people roys nicholso brianb jfr hms jo_davies semrich beete
	Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. [My Copy] Nature genetics, Vol. 40, No. 7. (15 July 2008), pp. 854-861. by Jun Zhu, Bin Zhang, Erin N. Smith, et al.Becky Drees, Rachel B. Brem, Leonid Kruglyak, Roger E. Bumgarner, Eric E. Schadt posted to transcriptional-regulatory-networks actex data_integration reverse_engineering by tmmurali on 2008-06-18 14:56:33 as along with 19 people and 1 group JoeBanks arider1 megraw TRHvidsten siebert ggallone jo_davies suteedee burak realzhang kengg maralena ptrobajo guhjy roys marck caseybrown djkt srp33 Jarman Lab
	Software Protection through Anti-Debugging [My Copy] Security & Privacy Magazine, IEEE In Security & Privacy Magazine, IEEE, Vol. 5, No. 3. (2007), pp. 82-84. by Michael N. Gagnon, Stephen Taylor, Anup K. Ghosh posted to ip protection reverse_engineering software legal by sachingarg on 2008-06-17 13:33:19 as along with 2 people calmazan falcarin
	Software protection: security's last stand? [My Copy] Security & Privacy, IEEE In Security & Privacy, IEEE, Vol. 1, No. 1. (2003), pp. 95-98. by M. R. Stytz, J. A. Whittaker posted to computer ip legal reverse_engineering security by sachingarg on 2008-06-17 13:26:29 as
	Creating Specifications from Code: Reverse-engineering Techniques [My Copy] Journal of Software Maintenance: Research and Practice, Vol. 3 (1991), pp. 145-162. by P. T. Breuer, K. Lano posted to program_comprehension reverse_engineering software_maintenance by edcdave on 2008-06-10 16:46:01 as
	A Simple Model of the Modular Structure of Transcriptional Regulation in Yeast [My Copy] Journal of Computational Biology, Vol. 15, No. 4. (2008), pp. 393-405. by Vladimir Filkov, Nameeta Shah posted to transcriptional-regulatory-networks actex reverse_engineering by tmmurali on 2008-05-09 05:30:23 as along with 1 person eskay
	Direct targets of the TRP63 transcription factor revealed by a combination of gene expression profiling and reverse engineering [My Copy] Genome Res. (25 April 2008), gr.073601.107. by Giusy Della Gatta, Mukesh Bansal, Alberto Ambesi-Impiombato, Dario Antonini, Caterina Missero, Diego di Bernardo posted to transcriptional-regulatory-networks actex reverse_engineering by tmmurali on 2008-04-29 22:17:55 as along with 1 person roys
	Reverse Engineering Goal Models from Legacy Code [My Copy] In RE '05: Proceedings of the 13th IEEE International Conference on Requirements Engineering (RE'05) (2005), pp. 363-372. by Yijun Yu, Yiqiao Wang, John Mylopoulos, Sotirios Liaskos, Alexei Lapouchnian, Julio posted to models program_comprehension reverse_engineering by edcdave on 2008-04-27 18:57:05 as along with 2 people leonardo yijunyu
	Discrimination of Direct and Indirect Interactions in a Network of Regulatory Effects [My Copy] Journal of Computational Biology, Vol. 14, No. 9. (2007), pp. 1217-1228. by Achim Tresch, T. Beissbarth, H. Sultmann, R. Kuner, A. Poustka, A. Buness posted to actex reverse_engineering by tmmurali on 2008-04-20 21:23:04 as along with 2 people systemsbiology ptrobajo
	Mining Security-Sensitive Operations in Legacy Code Using Concept Analysis [My Copy] Software Engineering, 2007. ICSE 2007. 29th International Conference on In Software Engineering, 2007. ICSE 2007. 29th International Conference on (2007), pp. 458-467. by Vinod Ganapathy, David King, Trent Jaeger, Somesh Jha posted to reverse_engineering by alphabetagamma on 2008-04-18 09:59:13 as
	Bayesian Network Analysis of Signaling Networks: A Primer [My Copy] Sci. STKE, Vol. 2005, No. 281. (26 April 2005), pl4. by Dana Pe'er posted to actex reverse_engineering by tmmurali on 2008-04-17 17:08:41 as along with 8 people abhishek_tiwari frohike ptrobajo saman_vp Borelli ryang wnpx jhatrimatri
	A use-case driven method of architecture recovery for program understanding and reuse reengineering [My Copy] Software Maintenance and Reengineering, 2000. Proceedings of the Fourth European In Software Maintenance and Reengineering, 2000. Proceedings of the Fourth European (2000), pp. 23-31. by D. Bojic, D. Velasevic posted to reverse_engineering structure_recovery by alphabetagamma on 2008-04-16 15:39:24 as
	Understanding Obfuscated Code [My Copy] In ICPC '06: Proceedings of the 14th IEEE International Conference on Program Comprehension (2006), pp. 268-274. by Matias Madou, Ludo Van Put, Koen De Bosschere posted to deobfuscation reverse_engineering by alphabetagamma on 2008-04-16 14:57:47 as
	Reverse engineering 4.7 million lines of code [My Copy] Software: Practice and Experience, Vol. 30, No. 2. (2000), pp. 129-150. by P. Tonella, G. Antoniol, R. Fiutem, F. Calzolari posted to reverse_engineering by alphabetagamma on 2008-04-16 13:36:08 as
	Conceptual module querying for software reengineering [My Copy] In ICSE '98: Proceedings of the 20th international conference on Software engineering (1998), pp. 64-73. by Elisa L. A. Baniassad, Gail C. Murphy posted to feature_location program_understanding reverse_engineering by alphabetagamma on 2008-04-16 11:32:31 as
	Linux as a case study: its extracted software architecture [My Copy] Software Engineering, 1999. Proceedings of the 1999 International Conference on In Software Engineering, 1999. Proceedings of the 1999 International Conference on (1999), pp. 555-563. by I. T. Bowman, R. C. Holt, N. V. Brewster posted to benchmark reverse_engineering structure_recovery by alphabetagamma on 2008-04-16 11:28:04 as along with 2 people and 1 group germoglio gvdh Software-Architecture
	New Frontiers of Reverse Engineering [My Copy] In FOSE '07: 2007 Future of Software Engineering (2007), pp. 326-341. by Gerardo Canforaharman, Massimiliano Di Penta posted to reverse_engineering by alphabetagamma on 2008-04-16 10:08:01 as along with 3 people buchgeher RalfMitschke ianwelch
	When and how to visualize traceability links? [My Copy] In TEFSE '05: Proceedings of the 3rd international workshop on Traceability in emerging forms of software engineering (2005), pp. 56-61. by Andrian Marcus, Xinrong Xie, Denys Poshyvanyk posted to reverse_engineering software_viz traceability by alphabetagamma on 2008-04-16 08:45:04 as along with 3 people florianschneider kklo RalfMitschke
	Revealing Class Structure with Zoomable Concept Lattices [My Copy] by Uri Dekel, Joseph (. Gil posted to reverse_engineering structure_recovery by alphabetagamma on 2008-04-16 08:27:40 as along with 1 person kklo
	Artificial gene networks for objective comparison of analysis algorithms [My Copy] Bioinformatics In Bioinformatics, Vol. 19, No. suppl_2. (27 September 2003), pp. ii122-129. by Pedro Mendes, Wei Sha, Keying Ye posted to actex reverse_engineering by tmmurali on 2008-04-16 08:00:12 as along with 9 people and 2 groups meanerelk fastjoe23 poirel tonamswish kaarsinogen camster dragonrez lfriedl pmendes dbk-lab kdl
	Deobfuscation: Reverse Engineering Obfuscated Code [My Copy] In WCRE '05: Proceedings of the 12th Working Conference on Reverse Engineering (2005), pp. 45-54. by Sharath K. Udupa, Saumya K. Debray, Matias Madou posted to deobfuscation reverse_engineering by alphabetagamma on 2008-04-16 05:22:56 as along with 1 person flander
	Context-sensitive data integration and prediction of biological networks [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2322-2330. by Chad L. Myers, Olga G. Troyanskaya posted to reverse_engineering by tmmurali on 2008-04-13 03:07:23 as along with 7 people rdiaz grahamc iris_2001 nedwards shung carlk guhjy
	Non-transcriptional pathway features reconstructed from secondary effects of RNA interference. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 21. (1 November 2005), pp. 4026-4032. by F. Markowetz, J. Bloch, R. Spang posted to actex reverse_engineering by tmmurali on 2008-04-12 17:39:38 as
	Computational identification of cellular networks and pathways [My Copy] Mol. BioSyst., Vol. 3, No. 7. (July 2007), pp. 478-482. by Florian Markowetz, Olga G. Troyanskaya posted to active-networks reverse_engineering by tmmurali on 2008-04-12 17:28:00 as along with 3 people arsyed guhjy carlk
	A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas [My Copy] Mol Syst Biol, Vol. 4 (12 February 2008) by Kartik M. Mani, Celine Lefebvre, Kai Wang, et al.Wei K. Lim, Katia Basso, Riccardo Dalla-Favera, Andrea Califano posted to actex active-networks reverse_engineering by tmmurali on 2008-04-12 17:24:07 as along with 8 people ipark-kaist frohike ihpark jfr ealloza shikin dap5087 dragonrez

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actex	17
software_clustering	13
program_comprehension	8
traceability	4
concept_analysis	3
data_integration	3
legal	3
software_maintenance	3
software_visualization	3
structure_recovery	3
survey	3
transcriptional-regulatory-networks	3
uml	3
active-networks	2
code_design_mapping	2
data_mining	2
deobfuscation	2
ip	2
optimization	2
regression	2
software	2
software_evolution	2
statecharts	2
verification	2
web_application	2
2005	1
algorithm	1
architecture_recovery	1
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benchmark	1
class_diagram	1
code_patterns	1
complexity	1
computer	1
concerns	1
distributed_systems	1
evolution	1
extinction_risk	1
feature_location	1
food_webs	1
function_ranking	1
functional_linkage_network	1
gene_networks	1
genetic_interactions	1
genetic_model	1
genome	1
google	1
gui	1
hierarchy_visualization	1
information	1
intention	1
intractable_problem	1
java	1
lock-in	1
microarray_data	1
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modeling	1
models	1
modularity	1
molecular_tools	1
mouse_brain	1
network-models	1
network_inference	1
neural_circuits	1
partial_correlation	1
paula	1
program_understanding	1
programming	1
protection	1
refactoring	1
relationships	1
retrieval	1
review	1
security	1
sensors	1
sequence_diagram	1
software_metric	1
software_viz	1
species_extinction	1
statistical	1
traceablility	1
usecase_diagram	1
we	1
web_navigation	1

Tag reverse_engineering [71 articles] Export

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