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Tag ribosome [148 articles]

Recent papers classified by the tag ribosome.
  • A structural understanding of the dynamic ribosome machine
    Nature Reviews Molecular Cell Biology, Vol. 9, No. 3., pp. 242-253.
    by Thomas A Steitz
    posted to dynamics ribosome structure by zwang on 2008-02-23 07:16:18 as * along with 1 person simone
  • Estimating the Growth Rate of Slowly Growing Marine Bacteria from RNA Content
    Appl. Environ. Microbiol., Vol. 59, No. 8. (1 August 1993), pp. 2594-2601.
    by PF Kemp, S Lee, J Laroche
    posted to ribosome rrna by vrich on 2008-05-18 02:50:40 as **
  • Peptide bond formation on the ribosome: structure and mechanism
    Current Opinion in Structural Biology, Vol. 13, No. 3. (June 2003), pp. 334-340.
    by Marina V Rodnina, Wolfgang Wintermeyer
    posted to peptide_synthesis ribosome by textoris on 2006-01-27 12:32:13 as read along with 1 person ffranca
  • Yeast Ribosomal Protein L24 Affects the Kinetics of Protein Synthesis and Ribosomal Protein L39 Improves Translational Accuracy, While Mutants Lacking Both Remain Viable
    Biochemistry, Vol. 39, No. 24. (20 June 2000), pp. 7236-7244.
    by J Dresios, IL Derkatch, SW Liebman, D Synetos
    posted to ribosome by simone on 2008-10-05 15:53:29 as **
  • The complex of a designer antibiotic with a model aminoacyl site of the 30S ribosomal subunit revealed by X-ray crystallography.
    Journal of the American Chemical Society, Vol. 125, No. 12. (26 March 2003), pp. 3410-3411.
    by RJ Russell, JB Murray, G Lentzen, J Haddad, S Mobashery
    posted to ribosome by simone on 2008-09-22 19:40:36 as **
  • High resolution mapping of ribosomal DNA in early mouse embryos by fluorescence in situ hybridization.
    Biol Reprod, Vol. 74, No. 5. (May 2006), pp. 807-815.
    by L Romanova, F Korobova, E Noniashvilli, A Dyban, O Zatsepina
    posted to early-mouse-embryo nucleolus ribosome by sebastien_vigneau on 2007-07-25 09:51:58 as read
  • Analysis of the pattern of QM expression during mouse development.
    Differentiation; research in biological diversity, Vol. 64, No. 3. (March 1999), pp. 161-171.
    by AA Mills, MJ Mills, DM Gardiner, SV Bryant, EJ Stanbridge
    posted to rbpl10 ribosome x-chromosome by sebastien_vigneau on 2008-07-22 18:37:21 as ***
  • Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping.
    RNA (6 February 2008)
    by Jonathan Esguerra, Jonas Warringer, Anders Blomberg
    posted to methylation ribosome rrna snorna snrna by sebastien_vigneau on 2008-02-18 10:50:29 as **
  • Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast.
    Proc Natl Acad Sci U S A, Vol. 102, No. 20. (17 May 2005), pp. 7203-7208.
    by A Tanay, A Regev, R Shamir
    posted to evolution ribosome systems_biology yeast by Schmidtc on 2005-10-17 13:11:18 as *** along with 1 person and 1 group carlk Bioinformatics
  • Structure of the E. coli protein-conducting channel bound to a translating ribosome
    Nature, Vol. 438, No. 7066., pp. 318-324.
    by Kakoli Mitra, Christiane Schaffitzel, Tanvir Shaikh, Florence Tama, Simon Jenni, Charles L Brooks, Nenad Ban, Joachim Frank
    posted to co-translation electron microscopy protein ribosome translocation by saunders on 2007-11-22 15:24:41 as *** along with 2 people dayjm ruudvanleeuwen
  • Folding of a nascent peptide on the ribosome.
    Progress in nucleic acid research and molecular biology, Vol. 66 (2001), pp. 41-66.
    by B Hardesty, G Kramer
    posted to chain co-translation nascent review ribosome by saunders on 2008-04-20 17:08:47 as **
  • A newly synthesized, ribosome-bound polypeptide chain adopts conformations dissimilar from early in vitro refolding intermediates.
    J Biol Chem, Vol. 276, No. 27. (6 July 2001), pp. 25411-25420.
    by PL Clark, J King
    posted to folding ribosome vivo by saunders on 2008-02-11 11:46:54 as **
  • A model for co-translational translocation: ribosome-regulated nascent polypeptide translocation at the protein-conducting channel.
    FEBS Lett, Vol. 580, No. 14. (12 June 2006), pp. 3353-3360.
    by K Mitra, J Frank
    posted to co-translation pause ribosome sensing signal srp translocation by saunders on 2007-11-22 15:28:31 as ***
  • Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics.
    Nature, Vol. 407, No. 6802. (21 September 2000), pp. 340-348.
    by AP Carter, WM Clemons, DE Brodersen, RJ Morgan-Warren, BT Wimberly, V Ramakrishnan
    posted to antibiotics ramakrishnan ribosome by Roshni on 2008-01-07 12:36:01 as *** along with 1 person jarasch
  • A network of orthogonal ribosome-mRNA pairs
    Nat Chem Biol, Vol. 1, No. 3. (2005), pp. 159-166.
    by Oliver Rackham, Jason W Chin
    posted to directed_evolution evolution ribosome rna synthetic_biology by rklancer on 2005-08-09 16:42:10 as read along with 1 person dayjm
  • The yeast homolog of mammalian ribosomal protein S30 is expressed from a duplicated gene without a ubiquitin-like protein fusion sequence. Evolutionary implications.
    J Biol Chem, Vol. 271, No. 23. (7 June 1996), pp. 13549-13555.
    by RT Baker, NA Williamson, RE Wettenhall
    posted to evolution fusion mammal ribosome s30 ubiquitin yeast by pombe on 2007-10-01 14:41:35 as **
  • Ribosome assembly in eukaryotes.
    Gene, Vol. 313 (14 August 2003), pp. 17-42.
    by M Fromont-Racine, B Senger, C Saveanu, F Fasiolo
    posted to eukaryotes review ribosome by pombe on 2007-10-01 14:38:51 as **
  • The Candida albicans UBI3 gene encoding a hybrid ubiquitin fusion protein involved in ribosome biogenesis is essential for growth.
    FEMS Yeast Res, Vol. 2, No. 1. (March 2002), pp. 25-30.
    by P Roig, D Gozalbo
    posted to albicans fusion ribosome ubi ubi3 ubiquitin by pombe on 2007-10-01 14:37:53 as **
  • The tails of ubiquitin precursors are ribosomal proteins whose fusion to ubiquitin facilitates ribosome biogenesis.
    Nature, Vol. 338, No. 6214. (30 March 1989), pp. 394-401.
    by D Finley, B Bartel, A Varshavsky
    posted to fusion ribosome ubi ubi1 ubiquitin yeast by pombe on 2007-10-01 14:37:01 as **
  • Drugs targeting the ribosome.
    Curr Opin Struct Biol, Vol. 15, No. 3. (June 2005), pp. 355-366.
    by T Hermann
    posted to drugs ribosome by pggm on 2005-08-11 14:46:21 as ***
  • The RIO kinases: an atypical protein kinase family required for ribosome biogenesis and cell cycle progression.
    Biochim Biophys Acta, Vol. 1754, No. 1-2. (30 December 2005), pp. 14-24.
    by N LaRonde-LeBlanc, A Wlodawer
    posted to cell kinase ribosome rio by neils on 2008-01-04 07:03:16 as **
  • Structure of the Mammalian 80S Ribosome at 8.7 A Resolution
    Structure, Vol. 16, No. 4. (8 April 2008), pp. 535-548.
    by Preethi Chandramouli, Maya Topf, Jean-Francois Menetret, Narayanan Eswar, Jamie J Cannone, Robin R Gutell, Andrej Sali, Christopher W Akey
    posted to cryo-em electron-microscopy modelling ribosome structure by neils on 2008-04-09 23:57:38 as **
  • Single-molecule imaging of full protein synthesis by immobilized ribosomes
    Nucl. Acids Res. (29 May 2008), gkn338.
    by Sotaro Uemura, Ryo Iizuka, Taro Ueno, Yoshihiro Shimizu, Hideki Taguchi, Takuya Ueda, Joseph D Puglisi, Takashi Funatsu
    posted to immobilisation protein ribosome synthesis visualisation by neils on 2008-05-30 04:15:14 as **
  • Structural Relationships Among the Ribosomal Stalk Proteins from the Three Domains of Life.
    Journal of molecular evolution (9 July 2008)
    by Przemysław Grela, Pau Bernadó, Dmitri Svergun, Jan Kwiatowski, Dariusz Abramczyk, Nikodem Grankowski, Marek Tchórzewski
    posted to evolution phylogeny ribosome structure protein by neils on 2008-07-11 00:18:55 as **
  • Revealing unique properties of the ribosome using a network based analysis
    Nucl. Acids Res. (14 July 2008), gkn433.
    by Hilda David-Eden, Yael Mandel-Gutfreund
    posted to analysis modelling network ribosome structure by neils on 2008-07-15 04:45:46 as **
  • Functional interaction between bases C1049 in domain II and G2751 in domain VI of 23S rRNA in Escherichia coli ribosomes.
    Nucleic Acids Res (5 February 2008)
    by Tomohiro Miyoshi, Toshio Uchiumi
    posted to gtpase ribosome rrna stalk by Mochimasa on 2008-02-12 07:51:25 as **
  • The puzzling lateral flexible stalk of the ribosome.
    Biol Cell, Vol. 95, No. 3-4. (n 2003), pp. 179-193.
    by P Gonzalo, JP Reboud
    posted to review ribosome stalk by Mochimasa on 2007-01-12 14:07:56 as ***
  • Interaction between RsgA and the ribosome.
    Nucleic acids symposium series (2004), No. 51. (2007), pp. 375-376.
    by T Kimura, K Takagi, HS Kyoko, L Kalachnyuk, A Muto, H Himeno
    posted to gtpase ribosome by Mochimasa on 2008-05-06 09:55:58 as **
  • Structural Basis for Interaction of the Ribosome with the Switch Regions of GTP-Bound Elongation Factors.
    Mol Cell, Vol. 25, No. 5. (9 March 2007), pp. 751-764.
    by SR Connell, C Takemoto, DN Wilson, H Wang, K Murayama, T Terada, M Shirouzu, M Rost, M Schüler, J Giesebrecht, M Dabrowski, T Mielke, P Fucini, S Yokoyama, CM Spahn
    posted to gtpase ribosome by Mochimasa on 2007-03-18 06:09:16 as **
  • Overexpression of the methanococcal ribosomal protein L12 in Escherichia coli and its incorporation into halobacterial 50 S subunits yielding active ribosomes.
    J Biol Chem, Vol. 265, No. 11. (15 April 1990), pp. 6436-6440.
    by AK Köpke, C Paulke, HS Gewitz
    posted to halobacterium methanococcus ribosome stalk by Mochimasa on 2007-02-14 08:07:28 as ****
  • On the composition and nature of the bulk protein of extremely halophilic bacteria.
    Arch Mikrobiol, Vol. 71, No. 4. (1970), pp. 353-360.
    by R Reistad
    posted to halobacteria ribosome by Mochimasa on 2007-04-17 11:02:58 as ** along with 1 person rowenabrennavart
  • Identification of novel Escherichia coli ribosome associated proteins using isobaric tags and multidimensional protein identification techniques.
    J Bacteriol (2 March 2007)
    by M Jiang, S M M Sullivan, A K K Walker, J R R Strahler, P C C Andrews, J R R Maddock
    posted to ecoli ribosome by Mochimasa on 2007-03-17 08:10:24 as **
  • Elevated copy number of L-A virus in yeast mutant strains defective in ribosomal stalk.
    Biochem Biophys Res Commun, Vol. 355, No. 2. (6 April 2007), pp. 575-580.
    by D Krokowski, M Tchorzewski, A Boguszewska, AR McKay, SL Maslen, CV Robinson, N Grankowski
    posted to eukaryote ribosome stalk yeast by Mochimasa on 2007-04-15 06:26:14 as **
  • The weird and wonderful world of bacterial ribosome regulation.
    Crit Rev Biochem Mol Biol, Vol. 42, No. 3. (n 2007), pp. 187-219.
    by DN Wilson, KH Nierhaus
    posted to prokaryote ribosome by Mochimasa on 2007-06-19 05:46:18 as **
  • Crosslinking of Translation Factor EF-G to Proteins of the Bacterial Ribosome Before and After Translocation.
    J Mol Biol (12 March 2007)
    by Roxana Nechifor, Kevin S S Wilson
    posted to crosslinking ef-g ribosome stalk by Mochimasa on 2007-04-20 02:17:51 as *
  • Structures of modified eEF2[middot]80S ribosome complexes reveal the role of GTP hydrolysis in translocation
    The EMBO Journal, Vol. aop, No. current. (19 April 2007)
    by Derek J Taylor, Jakob Nilsson, Rod A Merrill, Gregers R Andersen, Poul Nissen, Joachim Frank
    posted to gtpase ribosome by Mochimasa on 2007-04-22 05:55:54 as **
  • Genetic engineering and overexpression of ribosomal L12 protein genes from three different archaebacteria in E coli
    Biochimie, Vol. 73, No. 6. (June 1991), pp. 647-655.
    by AKE Kopke, F Hannemann, T Boeckh
    posted to archaebacteria halobacteria ribosome stalk by Mochimasa on 2007-02-14 01:53:11 as **
  • Three-Dimensional Structures of Translating Ribosomes by Cryo-EM
    Molecular Cell, Vol. 14, No. 1. (9 April 2004), pp. 57-66.
    by Robert J Gilbert, Paola Fucini, Sean Connell, Stephen D Fuller, Knud H Nierhaus, Carol V Robinson, Christopher M Dobson, David I Stuart
    posted to cryoem ribosome by mercaptan on 2006-03-06 22:04:02 as ***
  • The involvement of RNA in ribosome function.
    Nature, Vol. 418, No. 6894. (11 July 2002), pp. 229-235.
    by PB Moore, TA Steitz
    posted to ribosome rna by mercaptan on 2006-03-06 16:31:39 as ** along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
  • Following translation by single ribosomes one codon at a time
    Nature (09 March 2008)
    by Jin-Der Wen, Laura Lancaster, Courtney Hodges, Ana-Carolina Zeri, Shige H Yoshimura, Harry F Noller, Carlos Bustamante, Ignacio Tinoco
    posted to ribosome single-molecule translation by melting on 2008-03-13 23:34:06 as **** along with 3 people dchughes jonathanjacobs cactus
  • Historical review: Peptidyl transfer, the Monro era.
    Trends in biochemical sciences, Vol. 28, No. 11. (November 2003), pp. 619-624.
    by BE Maden
    posted to peptidyl review ribosome transfer by mcox on 2008-05-19 22:09:27 as **
  • Human ribosomal RNA gene: nucleotide sequence of the transcription initiation region and comparison of three mammalian genes.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 79, No. 10. (May 1982), pp. 3092-3096.
    by I Financsek, K Mizumoto, Y Mishima, M Muramatsu
    posted to 18s human ribosome sequence by mcox on 2008-05-15 15:53:31 as **
  • Eukaryotic ribosomal RNA: the recent excitement in the nucleotide modification problem.
    Chromosoma, Vol. 105, No. 7-8. (June 1997), pp. 391-400.
    by BE Maden, JM Hughes
    posted to 18s human ribosome sequence by mcox on 2008-05-19 21:59:59 as **
  • Structural basis for messenger RNA movement on the ribosome
    Nature (18 October 2006)
    by Gulnara Yusupova, Lasse Jenner, Bernard Rees, Dino Moras, Marat Yusupov
    posted to ribosome rna structure by marcius on 2006-10-20 14:25:18 as ** along with 1 person and 2 groups braingrind BioinfoCIPF SGU-CIPF
  • The structure of the 80S ribosome from Trypanosoma cruzi reveals unique rRNA components.
    Proc Natl Acad Sci U S A, Vol. 102, No. 29. (19 July 2005), pp. 10206-10211.
    by H Gao, MJ Ayub, MJ Levin, J Frank
    posted to ribosome rna structure by marcius on 2006-02-07 18:18:38 as ** along with 1 person and 2 groups simone BioinfoCIPF SGU-CIPF
  • The building blocks and motifs of RNA architecture.
    Curr Opin Struct Biol, Vol. 16, No. 3. (June 2006), pp. 279-287.
    by NB Leontis, A Lescoute, E Westhof
    posted to prediction rna motif ribosome by marcius on 2006-09-06 10:27:19 as ** along with 2 people and 2 groups eckart_bindewald debatebob BioinfoCIPF SGU-CIPF
  • Ribosome structure. The ribosome in action.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 868-869.
    by AE Dahlberg
    posted to ribosome rna structure by marcius on 2005-12-19 23:10:47 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Motif prediction in ribosomal RNAs Lessons and prospects for automated motif prediction in homologous RNA molecules.
    Biochimie, Vol. 84, No. 9. (September 2002), pp. 961-973.
    by NB Leontis, J Stombaugh, E Westhof
    posted to motif prediction ribosome rna by marcius on 2006-09-06 10:25:05 as ** along with 1 person and 2 groups eckart_bindewald BioinfoCIPF SGU-CIPF
  • Structural basis for the control of translation initiation during stress
    Nature Structural & Molecular Biology, Vol. 11, No. 11. (24 October 2004), 1054.
    by Antón Vila-Sanjurjo, Barbara-S Schuwirth, Cathy W Hau, Jamie HD Cate
    posted to ribosome rna structure by marcius on 2006-01-10 23:10:56 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • The accuracy of ribosomal RNA comparative structure models.
    Curr Opin Struct Biol, Vol. 12, No. 3. (June 2002), pp. 301-310.
    by RR Gutell, JC Lee, JJ Cannone
    posted to ribosome rna secondary_structure structure by marcius on 2005-12-28 10:57:15 as ** along with 1 person and 2 groups arcticrasta BioinfoCIPF SGU-CIPF
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