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Tag rice [96 articles]

Recent papers classified by the tag rice.
  • OsPAA2, a distinct alpha 1 subunit gene for the 20S proteasome in rice (Oryza sativa L.).
    Gene, Vol. 272, No. 1-2. (11 July 2001), pp. 19-23.
    by S Oguchi, H Sassa, H Hirano
    posted to gene-duplication plant proteasome rice by zhlei on 2005-04-12 03:32:30 as **
  • Mass spectrometric analysis of expression of ATPase subunits encoded by duplicated genes in the 19S regulatory particle of rice 26S proteasome.
    Arch Biochem Biophys, Vol. 421, No. 1. (1 January 2004), pp. 34-41.
    by T Shibahara, H Kawasaki, H Hirano
    posted to gene-duplication plant proteasome rice by zhlei on 2005-04-07 22:05:09 as **
  • Identification of the 19S regulatory particle subunits from the rice 26S proteasome.
    Eur J Biochem, Vol. 269, No. 5. (March 2002), pp. 1474-1483.
    by T Shibahara, H Kawasaki, H Hirano
    posted to gene-duplication plant proteasome rice by zhlei on 2005-04-11 01:25:12 as **
  • Primary structural features of the 20S proteasome subunits of rice (Oryza sativa)
    Gene, Vol. 250, No. 1-2. (30 May 2000), pp. 61-66.
    by Hidenori Sassa, So Oguchi, Takeshi Inoue, Hisashi Hirano
    posted to gene-duplication plant proteasome rice by zhlei on 2005-06-22 20:42:36 as **
  • The Genomes of Oryza sativa: a history of duplications.
    PLoS biology, Vol. 3, No. 2. (February 2005)
    by J Yu, J Wang, W Lin, S Li, H Li, J Zhou, P Ni, W Dong, S Hu, C Zeng, J Zhang, Y Zhang, R Li, Z Xu, S Li, X Li, H Zheng, L Cong, L Lin, J Yin, J Geng, G Li, J Shi, J Liu, H Lv, J Li, J Wang, Y Deng, L Ran, X Shi, X Wang, Q Wu, C Li, X Ren, J Wang, X Wang, D Li, D Liu, X Zhang, Z Ji, W Zhao, Y Sun, Z Zhang, J Bao, Y Han, L Dong, J Ji, P Chen, S Wu, J Liu, Y Xiao, D Bu, J Tan, L Yang, C Ye, J Zhang, J Xu, Y Zhou, Y Yu, B Zhang, S Zhuang, H Wei, B Liu, M Lei, H Yu, Y Li, H Xu, S Wei, X He, L Fang, Z Zhang, Y Zhang, X Huang, Z Su, W Tong, J Li, Z Tong, S Li, J Ye, L Wang, L Fang, T Lei, C Chen, H Chen, Z Xu, H Li, H Huang, F Zhang, H Xu, N Li, C Zhao, S Li, L Dong, Y Huang, L Li, Y Xi, Q Qi, W Li, B Zhang, W Hu, Y Zhang, X Tian, Y Jiao, X Liang, J Jin, L Gao, W Zheng, B Hao, S Liu, W Wang, L Yuan, M Cao, J McDermott, R Samudrala, J Wang, GK Wong, H Yang
    posted to evolution genome_alignment plant rice by xwbcn on 2008-05-20 16:06:38 as **
  • Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis.
    Physiol Genomics, Vol. 17, No. 2. (13 April 2004), pp. 87-100.
    by J Yazaki, Z Shimatani, A Hashimoto, Y Nagata, F Fujii, K Kojima, K Suzuki, T Taya, M Tonouchi, C Nelson, A Nakagawa, Y Otomo, K Murakami, K Matsubara, J Kawai, P Carninci, Y Hayashizaki, S Kikuchi
    posted to arabidopsis chip genome microarray motif rice by xwbcn on 2006-03-07 09:50:02 as *****
  • Single feature polymorphism discovery in rice.
    PLoS ONE, Vol. 2 (2007)
    by R Kumar, J Qiu, T Joshi, B Valliyodan, D Xu, HT Nguyen
    posted to chip genome plant plants rice sfp by xwbcn on 2007-03-22 06:48:35 as ***** along with 1 person natstreet
  • Distinct and cooperative functions of phytochromes A, B, and C in the control of deetiolation and flowering in rice.
    Plant Cell, Vol. 17, No. 12. (December 2005), pp. 3311-3325.
    by M Takano, N Inagaki, X Xie, N Yuzurihara, F Hihara, T Ishizuka, M Yano, M Nishimura, A Miyao, H Hirochika, T Shinomura
    posted to flowering rice by xwbcn on 2006-02-25 15:06:58 as **** along with 1 person Happybene
  • Genome-wide transcription analyses in rice using tiling microarrays.
    Nat Genet (20 December 2005)
    by Lei Li, Xiangfeng Wang, Viktor Stolc, Xueyong Li, Dongfen Zhang, Ning Su, Waraporn Tongprasit, Songgang Li, Zhukuan Cheng, Jun Wang, Xing Wang W Deng
    posted to genome rice by xwbcn on 2005-12-26 02:43:05 as ** along with 1 person balicea
  • Characterization of the maize endosperm transcriptome and its comparison to the rice genome.
    Genome Res, Vol. 14, No. 10A. (October 2004), pp. 1932-1937.
    by J Lai, N Dey, CS Kim, AK Bharti, S Rudd, KF Mayer, BA Larkins, P Becraft, J Messing
    posted to comparative_study expression maize rice by xwbcn on 2006-05-16 19:50:32 as ***
  • High Rate of Chimeric Gene Origination by Retroposition in Plant Genomes.
    Plant Cell (7 July 2006)
    by Wen Wang, Hongkun Zheng, Chuanzhu Fan, Jun Li, Junjie Shi, Zhengqiu Cai, Guojie Zhang, Dongyuan Liu, Jianguo Zhang, Søren Vang, Zhike Lu, Gane Ka-Shu Wong, Manyuan Long, Jun Wang
    posted to evolution retrogene rice by xwbcn on 2006-07-20 09:01:34 as **
  • A microarray analysis of the rice transcriptome and its comparison to Arabidopsis.
    Genome Res, Vol. 15, No. 9. (September 2005), pp. 1274-1283.
    by L Ma, C Chen, X Liu, Y Jiao, N Su, L Li, X Wang, M Cao, N Sun, X Zhang, J Bao, J Li, S Pedersen, L Bolund, H Zhao, L Yuan, GK Wong, J Wang, XW Deng, J Wang
    posted to arabidopsis chip genome rice by xwbcn on 2006-01-14 07:15:17 as **
  • Conservation of the E-function for Floral Organ Identity in Rice Revealed by the Analysis of Tissue Culture-induced Loss-of-Function Mutants of the OsMADS1 Gene
    Plant Molecular Biology, Vol. 59, No. 1. (September 2005), pp. 125-135.
    by Ganesh Agrawal, Kiyomi Abe, Muneo Yamazaki, Akio Miyao, Hirohiko Hirochika
    posted to flowering mads-box rice by xwbcn on 2005-12-09 02:54:49 as ***
  • Pack-MULE transposable elements mediate gene evolution in plants.
    Nature, Vol. 431, No. 7008. (30 September 2004), pp. 569-573.
    by N Jiang, Z Bao, X Zhang, SR Eddy, SR Wessler
    posted to evolution rice te by xwbcn on 2005-12-26 01:27:27 as ** along with 1 person ArtemPankin
  • Transposable element annotation of the rice genome
    Bioinformatics, Vol. 20, No. 2. (22 January 2004), pp. 155-160.
    by Nikoleta Juretic, Thomas E Bureau, Richard M Bruskiewich
    posted to transposable_element rice genome annotation by xwbcn on 2008-09-23 10:59:18 as **
  • Genome-wide analysis of spatial and temporal gene expression in rice panicle development
    The Plant Journal, Vol. 46, No. 3. (May 2006), pp. 503-511.
    by Ikuyo Furutani, Shin Sukegawa, Junko Kyozuka
    posted to chip expression flowering microarray rice by xwbcn on 2006-05-30 18:56:54 as ***
  • Evolutionary expansion, gene structure, and expression of the rice wall-associated kinase gene family.
    Plant Physiol, Vol. 139, No. 3. (November 2005), pp. 1107-1124.
    by S Zhang, C Chen, L Li, L Meng, J Singh, N Jiang, XW Deng, ZH He, PG Lemaux
    posted to evolution gene_family rice by xwbcn on 2005-12-25 14:16:57 as ** along with 1 person balicea
  • Adaptation of photoperiodic control pathways produces short-day flowering in rice.
    Nature, Vol. 422, No. 6933. (17 April 2003), pp. 719-722.
    by R Hayama, S Yokoi, S Tamaki, M Yano, K Shimamoto
    posted to flowering rice by xwbcn on 2005-12-25 13:48:39 as ** along with 1 person Happybene
  • Transcription and Histone Modifications in the Recombination-Free Region Spanning a Rice Centromere.
    Plant Cell (4 November 2005)
    by Huihuang Yan, Weiwei Jin, Kiyotaka Nagaki, Shulan Tian, Shu Ouyang, C Robin R Buell, Paul B B Talbert, Steven Henikoff, Jiming Jiang
    posted to rice by xwbcn on 2005-12-02 02:07:53 as *** along with 1 person and 1 group kengg Plantandetc
  • Novel and Stress-Regulated MicroRNAs and Other Small RNAs from Arabidopsis
    Plant Cell, Vol. 16, No. 8. (1 August 2004), pp. 2001-2019.
    by Ramanjulu Sunkar, Jian-Kang Zhu
    posted to arabidopsis mirna rice by xwbcn on 2006-03-22 02:21:57 as *** along with 1 person and 1 group cdawson GIG
  • Antisense transcripts with rice full-length cDNAs.
    Genome Biol, Vol. 5, No. 1. (2003)
    by N Osato, H Yamada, K Satoh, H Ooka, M Yamamoto, K Suzuki, J Kawai, P Carninci, Y Ohtomo, K Murakami, K Matsubara, S Kikuchi, Y Hayashizaki
    posted to antisense expression genome rice sense by xwbcn on 2006-10-08 13:59:54 as *****
  • Identification of plant promoter constituents by analysis of local distribution of short sequences
    BMC Genomics, Vol. 8 (08 March 2007), 67.
    by Yoshiharu Y Yamamoto, Hiroyuki Ichida, Minami Matsui, Junichi Obokata, Teshuya Sakurai, Masakazu Satou, Motoaki Seki, Kazuo Shinozaki, Tomoko Abe
    posted to arabidopsis comparative_study g genome motif promoter rice by xwbcn on 2007-05-02 08:08:59 as ** along with 5 people and 1 group kengg saru byy Jporci natstreet Plantandetc
  • Serial Analysis of Gene Expression Study of a Hybrid Rice Strain (LYP9) and Its Parental Cultivars
    Plant Physiol., Vol. 138, No. 3. (1 July 2005), pp. 1216-1231.
    by Jingyue Bao, Sanggyu Lee, Chen Chen, Xiuqing Zhang, Yu Zhang, Siqi Liu, Terry Clark, Jian Wang, Mengliang Cao, Huanming Yang, San M Wang, Jun Yu
    posted to chip heterosis rice by xwbcn on 2006-03-26 08:14:18 as ***
  • Hd3a Protein Is a Mobile Flowering Signal in Rice.
    Science (19 April 2007)
    by Shojiro Tamaki, Shoichi Matsuo, Hann Ling L Wong, Shuji Yokoi, Ko Shimamoto
    posted to arabidopsis flowering promoter rice by xwbcn on 2007-04-22 08:33:26 as **
  • A genome-wide gain-of-function analysis of rice genes using the FOX-hunting system.
    Plant Mol Biol (10 October 2007)
    by Hidemitsu Nakamura, Makoto Hakata, Kou Amano, Akio Miyao, Naoko Toki, Mariko Kajikawa, Jinhuan Pang, Naokuni Higashi, Shigeko Ando, Seiichi Toki, Miki Fujita, Akiko Enju, Motoaki Seki, Miki Nakazawa, Takanari Ichikawa, Kazuo Shinozaki, Minami Matsui, Yoshiaki Nagamura, Hirohiko Hirochika, Hiroaki Ichikawa
    posted to full-length_cdna rice by xwbcn on 2007-10-23 07:18:11 as **
  • Gene evolution at the ends of wheat chromosomes
    PNAS, Vol. 103, No. 11. (14 March 2006), pp. 4162-4167.
    by Deven R See, Steven Brooks, James C Nelson, Gina Brown-Guedira, Bernd Friebe, Bikram S Gill
    posted to evolution genome_alignment plant rice by xwbcn on 2006-03-17 06:25:46 as ***
  • The evolutionary fate of MULE-mediated duplications of host gene fragments in rice.
    Genome Res, Vol. 15, No. 9. (September 2005), pp. 1292-1297.
    by N Juretic, DR Hoen, ML Huynh, PM Harrison, TE Bureau
    posted to evolution genome repeats retrogene rice by xwbcn on 2006-03-28 15:27:12 as **
  • Environmental Factors that Affect the Ability of Amylose to Contribute to Retrogradation in Gels Made from Rice Flour
    J. Agric. Food Chem., Vol. 54, No. 14. (12 July 2006), pp. 5182-5190.
    by K Philpot, M Martin, V Butardo, D Willoughby, M Fitzgerald
    posted to amylopectin amylose retrogradation rice starch by vmbutardo on 2008-02-09 07:24:08 as read
  • Evaluation of Genetic Diversity in Rice Subspecies Using Microsatellite Markers
    Crop Sci, Vol. 42, No. 2. (1 March 2002), pp. 601-607.
    by Junjian Ni, Peter M Colowit, David J Mackill
    posted to diversity genetic marker microsatellite oryza rice sativa by uzilday on 2008-03-29 11:32:10 as ***
  • LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss
    BMC Genomics, Vol. 8 (06 July 2007), 218.
    by Clementine Vitte, Olivier Panaud, Hadi Quesneville
    posted to genome_size rice te by urgi on 2007-11-28 16:24:46 as ** along with 2 people timflutre PetrovLab
  • Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.
    Genome Res, Vol. 17, No. 2. (February 2007), pp. 175-183.
    by T Itoh, T Tanaka, RA Barrero, C Yamasaki, Y Fujii, PB Hilton, BA Antonio, H Aono, R Apweiler, R Bruskiewich, T Bureau, F Burr, Costa A de Oliveira, G Fuks, T Habara, G Haberer, B Han, E Harada, AT Hiraki, H Hirochika, D Hoen, H Hokari, S Hosokawa, YI Hsing, H Ikawa, K Ikeo, T Imanishi, Y Ito, P Jaiswal, M Kanno, Y Kawahara, T Kawamura, H Kawashima, JP Khurana, S Kikuchi, S Komatsu, KO Koyanagi, H Kubooka, D Lieberherr, YC Lin, D Lonsdale, T Matsumoto, A Matsuya, WR Mccombie, J Messing, A Miyao, N Mulder, Y Nagamura, J Nam, N Namiki, H Numa, S Nurimoto, C O'Donovan, H Ohyanagi, T Okido, S Oota, N Osato, LE Palmer, F Quetier, S Raghuvanshi, N Saichi, H Sakai, Y Sakai, K Sakata, T Sakurai, F Sato, Y Sato, H Schoof, M Seki, M Shibata, Y Shimizu, K Shinozaki, Y Shinso, NK Singh, B Smith-White, J Takeda, M Tanino, T Tatusova, S Thongjuea, F Todokoro, M Tsugane, AK Tyagi, A Vanavichit, A Wang, RA Wing, K Yamaguchi, M Yamamoto, N Yamamoto, Y Yu, H Zhang, Q Zhao, K Higo, B Burr, T Gojobori, T Sasaki
    posted to genomics rice by timflutre on 2007-06-04 16:32:17 as **
  • Inaugural Article: Rapid recent growth and divergence of rice nuclear genomes
    Proceedings of the National Academy of Sciences, Vol. 101, No. 34. (24 August 2004), pp. 12404-12410.
    by Jianxin Ma, Jeffrey L Bennetzen
    posted to genomics molec_evo rice by timflutre on 2008-06-04 09:10:16 as **
  • Formation of solo-LTRs through unequal homologous recombination counterbalances amplifications of LTR retrotransposons in rice Oryza sativa L.
    Molecular Biology and Evolution, Vol. 20, No. 4. (April 2003), pp. 528-540.
    by C Vitte, O Panaud
    posted to rice te by timflutre on 2007-09-03 15:16:02 as **
  • Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution.
    Plant Cell (4 January 2008)
    by Jérôme Salse, Stéphanie Bolot, Michaël Throude, Vincent Jouffe, Benoît Piegu, Umar Masood Quraishi, Thomas Calcagno, Richard Cooke, Michel Delseny, Catherine Feuillet
    posted to duplication genomics rice wheat by timflutre on 2008-01-28 11:49:54 as **
  • notes Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice.
    Proc Natl Acad Sci U S A, Vol. 103, No. 2. (10 January 2006), pp. 383-388.
    by J Ma, JL Bennetzen
    posted to rice epigenetics by timflutre on 2007-11-28 16:10:39 as read
  • Genetic and molecular dissection of quantitative traits in rice
    Plant Molecular Biology, Vol. 35, No. 1. (1997), pp. 145-153.
    by Masahiro Yano, Takuji Sasaki
    posted to rice genetics by timflutre on 2008-09-30 12:34:05 as **
  • Extensive Concerted Evolution of Rice Paralogs and the Road to Regaining Independence
    Genetics, Vol. 177, No. 3. (1 November 2007), pp. 1753-1763.
    by Xiyin Wang, Haibao Tang, John E Bowers, Frank A Feltus, Andrew H Paterson
    posted to conversion duplication gene genome paralog rice by tanghaibao on 2008-04-25 04:13:27 as ** along with 2 people dandaman BioNica
  • Sulfur Requirement of Eight Crops at Early Stages of Growth
    Agron J, Vol. 97, No. 1. (1 January 2005), pp. 155-159.
    by Kiyoko Hitsuda, Mitate Yamada, Dirceu Klepker
    posted to deficiency maize rice seaplib soybean sulfur wheat by Sinchee on 2006-01-09 08:23:18 as ** along with 1 group Oilpalm
  • Genome-wide investigation on the genetic variations of rice disease resistance genes.
    Plant Mol Biol (17 August 2006)
    by Sihai Yang, Zhumei Feng, Xiuyan Zhang, Ke Jiang, Xinqing Jin, Yueyu Hang, Jian-Qun Q Chen, Dacheng Tian
    posted to r rice by saru on 2006-08-27 01:52:41 as **
  • THE RICE GENOME: Rice: Boiled Down to Bare Essentials
    Science, Vol. 296, No. 5565. (5 April 2002), pp. 32-36.
    by Dennis Normile, Elizabeth Pennisi
    posted to rice by ricmilne on 2007-03-20 15:51:13 as ** along with 1 group STS
  • THE RICE GENOME: The Most Precious Things Are Not Jade and Pearls...
    Science, Vol. 296, No. 5565. (5 April 2002), pp. 58-59.
    by Pamela Ronald, Hei Leung
    posted to rice by ricmilne on 2007-03-20 15:48:36 as ** along with 1 group STS
  • THE RICE GENOME: A Deal for the Rice Genome
    Science, Vol. 296, No. 5565. (5 April 2002), 34.
    by Eliot Marshall
    posted to rice by ricmilne on 2007-03-20 15:50:53 as ** along with 1 group STS
  • THE RICE GENOME: The Cereal of the World's Poor Takes Center Stage
    Science, Vol. 296, No. 5565. (5 April 2002), 53.
    by Ronald P Cantrell, Timothy G Reeves
    posted to rice by ricmilne on 2007-03-20 15:49:48 as ** along with 1 group STS
  • THE RICE GENOME: World Poverty and Hunger--the Challenge for Science
    Science, Vol. 296, No. 5565. (5 April 2002), pp. 54-58.
    by Ismail Serageldin
    posted to rice by ricmilne on 2007-03-20 15:49:05 as ** along with 1 group STS
  • The Importance of Rice
    Science, Vol. 296, No. 5565. (5 April 2002), 13.
    by Donald Kennedy
    posted to rice by ricmilne on 2007-03-20 15:52:23 as ** along with 1 group STS
  • Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection
    BMC Genomics, Vol. 8, No. 1. (2007)
    by Neil Graham, Martin Broadley, John Hammond, Philip White, Sean May
    posted to affymetrix arabidopsis cross-species rice sara by ptrobajo on 2008-05-07 16:22:25 as ** along with 2 people jyuh natstreet
  • Superfine grinding of steam-exploded rice straw and its enzymatic hydrolysis
    Biochemical Engineering Journal, Vol. 30, No. 3. (25 June 2006), pp. 225-230.
    by Shengying Jin, Hongzhang Chen
    posted to explosion in rice steam straw by poo on 2006-07-16 09:26:40 as **
  • Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses
    The Plant Journal, Vol. 0, No. ja. (0)
    by Shinyoung Lee, Sang C Choi, Gynheung An
    posted to br mads rice by p2vani on 2008-01-24 00:51:28 as ***** along with 1 group Botany and Plant Sciences
  • Identification and characterization of a gibberellin-regulated protein, which is ASR5, in the basal region of rice leaf sheaths
    Molecular Genetics and Genomics
    by Hironori Takasaki, Tariq Mahmood, Makoto Matsuoka, Hiroshi Matsumoto, Setsuko Komatsu
    posted to asr5 evodevo ga rice by p2vani on 2008-01-29 05:07:34 as *** along with 1 group Botany and Plant Sciences
  • notes Functional analysis of rice HOMEOBOX4 ( Oshox4 ) gene reveals a negative function in gibberellin responses
    Plant Molecular Biology, Vol. 66, No. 3. (21 February 2008), pp. 289-301.
    by Mingqiu Dai, Yongfeng Hu, Qian Ma, Yu Zhao, Dao-Xiu Zhou
    posted to ga homeobox rice by p2vani on 2008-01-05 04:39:03 as read along with 1 group Botany and Plant Sciences
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