Tag rmsd [26 articles] Export Sort

Recent papers classified by the tag rmsd.

Hide details

	GARD: A Generally Applicable Replacement for RMSD [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 8. (24 August 2009), pp. 1889-1900. by J. Christian Baber, David C. Thompson, Jason B. Cross, Christine Humblet posted to alignment binding deviation docking gard importance interpretation limitations measure normalization poses rmsd by zimbo1 on 2009-07-27 13:26:00 as along with 3 people and 1 group A_Coletta_Thesis nickolay reyez Structural Biology Group TorVergata
	Metric properties of the root-mean-square deviation of vector sets [My Copy] Acta Crystallographica Section A, Vol. 53, No. 6. (November 1997) by K. Kaindl, B. Steipe posted to rmsd by Diego_Prada on 2009-05-16 20:17:47 as along with 1 person rabio
	A revised proof of the metric properties of optimally superimposed vector sets [My Copy] Acta Crystallographica Section A, Vol. 58, No. 5. (Sep 2002), 506. by Boris Steipe posted to rmsd by Diego_Prada on 2009-05-16 20:03:02 as
	Rapid calculation of RMSDs using a quaternion-based characteristic polynomial [My Copy] Acta Crystallographica Section A Foundations of Crystallography by Douglas L. Theobald posted to rmsd by Diego_Prada on 2009-05-16 19:55:09 as
	A method to explore transition paths in macromolecules. Applications to hemoglobin and phosphoglycerate kinase [My Copy] Computer Physics Communications, Vol. 91, No. 1-3. (02 September 1995), pp. 263-273. by C. Guilbert, D. Perahia, L. Mouawad posted to md md_history rmsd by Diego_Prada on 2009-04-05 17:18:35 as along with 1 person oteri
	SCUD: Fast structure clustering of decoys using reference state to remove overall rotation [My Copy] Journal of Computational Chemistry, Vol. 26, No. 11. (2005), pp. 1189-1192. by Hongzhi Li, Yaoqi Zhou posted to clustering rmsd by rabio on 2009-04-03 19:19:08 as
	Efficient RMSD measures for the comparison of two molecular ensembles [My Copy] Proteins, Vol. 50, No. 1. (1 January 2003), pp. 26-34. by Rafael Brüschweiler posted to rmsd by rabio on 2009-03-20 17:39:51 as along with 2 people gane5h fpiazza
	Using quaternions to calculate RMSD. [My Copy] J Comput Chem, Vol. 25, No. 15. (30 November 2004), pp. 1849-1857. by E. A. Coutsias, C. Seok, K. A. Dill posted to 494 protein rmsd by eskay on 2008-10-16 20:45:54 as along with 6 people Diego_Prada BragilMassoud apaydin nachtalp dgront rabio
	Evaluation of the performance of 3D virtual screening protocols: RMSD comparisons, enrichment assessments, and decoy selection—What can we learn from earlier mistakes? [My Copy] Journal of Computer-Aided Molecular Design, Vol. 22, No. 3. (16 March 2008), pp. 213-228. by Johannes Kirchmair, Patrick Markt, Simona Distinto, Gerhard Wolber, Thierry Langer posted to docking enrichment ligand modeling pharmacophore protein rmsd screening virtual by GermanErlenkamp on 2008-08-07 10:43:13 as
	Saturating representation of loop conformational fragments in structure databanks [My Copy] BMC Structural Biology, Vol. 6 (04 July 2006), 15. by Narcis Fernandez-Fuentes, Andras Fiser posted to angstrom cut-off fragments loop rmsd by saunders on 2008-07-14 14:01:37 as along with 3 people iakes vavi cdeane
	A solution to the weighted procrustes problem in which the transformation is in agreement with the loss function [My Copy] Psychometrika, Vol. 41, No. 4. (18 December 1976), pp. 547-550. by Robert Lissitz, Peter Schönemann, James Lingoes posted to algebra rmsd svd by rabio on 2008-05-05 23:54:18 as
	A generalized solution of the orthogonal procrustes problem [My Copy] Psychometrika, Vol. 31, No. 1. (27 March 1966), pp. 1-10. by Peter Schönemann posted to algebra rmsd svd by rabio on 2008-05-05 22:23:42 as
	Comment on 'Using quaternions to calculate RMSD' [J. Comp. Chem. 25, 1849 (2004)] [My Copy] Journal of Computational Chemistry, Vol. 26 (June 2005), pp. 1660-1662. by G. R. Kneller posted to rmsd structure_comparison by rabio on 2008-04-01 02:00:05 as
	Rotational superposition and least squares: The SVD and quaternions approaches yield identical results. Reply to the preceding comment by G. Kneller [My Copy] Journal of Computational Chemistry, Vol. 26, No. 15. (2005), pp. 1663-1665. by Evangelos A. Coutsias, Chaok Seok, Ken A. Dill posted to rmsd structure_comparison by rabio on 2008-04-01 01:49:24 as
	RMS/Coverage graphs: A qualitative method for comparing three-dimensional protein structure predictions [My Copy] Proteins: Structure, Function, and Genetics, Vol. 37, No. S3. (1999), pp. 15-21. by Tim J. P. Hubbard posted to casp rmsd by rabio on 2008-03-31 01:35:32 as along with 1 person mijam
	Rotational superposition: a review of methods [My Copy] Journal of Molecular Graphics & Modelling, Vol. 17, No. 3-4. (g 1999), pp. 238-244. by Darren R. Flower posted to review rmsd structure_comparison by rabio on 2008-03-30 21:37:58 as
	A note on the rotational superposition problem [My Copy] Acta Crystallographica Section A, Vol. 44, No. 2. (Mar 1988), pp. 211-216. by Robert Diamond posted to rmsd structure_comparison by rabio on 2008-03-30 14:15:23 as
	On the multiple simultaneous superposition of molecular structures by rigid body transformations [My Copy] Protein Science : a Publication of the Protein Society, Vol. 1, No. 10. (1 October 1992), pp. 1279-1287. by Robert Diamond posted to rmsd structure_comparison by rabio on 2008-03-29 23:28:46 as
	Gaussian-weighted RMSD superposition of proteins: a structural comparison for flexible proteins and predicted protein structures [My Copy] Biophysical Journal, Vol. 90, No. 12. (15 June 2006), pp. 4558-4573. by Kelly L. Damm, Heather A. Carlson posted to rmsd structure_comparison by rabio on 2008-03-23 17:37:20 as along with 5 people mijam nickolay blackbart choonpeng higueruelo
	A solution for the best rotation to relate two sets of vectors [My Copy] Acta Crystallographica Section A, Vol. 32, No. 5. (September 1976), pp. 922-923. by W. Kabsch posted to rmsd structure_comparison by rabio on 2008-03-21 11:32:44 as along with 3 people reyez pavanghatty gisle
	A discussion of the solution for the best rotation to relate two sets of vectors [My Copy] Acta Crystallographica Section A, Vol. 34, No. 5. (September 1978), pp. 827-828. by W. Kabsch posted to rmsd structure_comparison by rabio on 2008-03-21 11:30:44 as along with 1 person gisle
	Matt: Local Flexibility Aids Protein Multiple Structure Alignment [My Copy] PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e10. by Matthew Menke, Bonnie Berger, Lenore Cowen posted to fragment penelope rmsd superposition by biehl on 2008-01-14 09:54:06 as
	MaxSub: an automated measure for the assessment of protein structure prediction quality. [My Copy] Bioinformatics, Vol. 16, No. 9. (September 2000), pp. 776-785. by N. Siew, A. Elofsson, L. Rychlewski, D. Fischer posted to homology rmsd superposition by biehl on 2007-10-02 14:31:43 as along with 6 people and 2 groups sebk rabio granujilla BragilMassoud marcius dgront BioinfoCIPF SGU-CIPF
	Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures [My Copy] Lecture Notes in Computer Science : Combinatorial Pattern Matching (2006), pp. 84-93. by Tetsuo Shibuya posted to incremental protein rmsd structure by nigham on 2006-12-14 08:17:25 as
	Significance of root-mean-square deviation in comparing three-dimensional structures of globular proteins. [My Copy] J Mol Biol, Vol. 235, No. 2. (14 January 1994), pp. 625-634. by V. N. Maiorov, G. M. Crippen posted to rmsd by gane5h on 2006-12-02 10:00:43 as along with 2 people and 2 groups ana fpiazza structural_bioinformatics Bioinformatics
	A normalized root-mean-spuare distance for comparing protein three-dimensional structures [My Copy] Protein Sci, Vol. 10, No. 7. (1 July 2001), pp. 1470-1473. by Oliviero Carugo, Sandor Pongor posted to rmsd by yongzhao on 2006-01-26 22:03:11 as along with 1 person and 1 group jonasvasur TSRI_MGL

Note: You may cite this page as: http://www.citeulike.org/tag/rmsd

Sort by:
Order:	Default Ascending Descending
Empty fields:	Default First Last

structure_comparison	9
protein	3
algebra	2
docking	2
gard	2
kabsch	2
superposition	2
svd	2
494	1
alignment	1
angstrom	1
articulo	1
binding	1
casp	1
clustering	1
cut-off	1
deviation	1
enrichment	1
fragment	1
fragments	1
homology	1
importance	1
incremental	1
interpretation	1
ligand	1
limitations	1
loop	1
md	1
md_history	1
measure	1
methods	1
metric	1
modeling	1
normalization	1
penelope	1
pharmacophore	1
pman	1
poses	1
review	1
screening	1
structure	1
virtual	1

Tag rmsd [26 articles] Export Sort

Related Tags