Tag rna [at least 200 articles] Export

Recent papers classified by the tag rna.

	Dynamics of tRNA at Different Levels of Hydration [My Copy] Biophysical Journal, Vol. 96, No. 7. (08 April 2009), pp. 2755-2762. by J. H. Roh, R. M. Briber, A. Damjanovic, D. Thirumalai, S. A. Woodson, A. P. Sokolov posted to rna_sec_structure rna dna_water dna_md by itolokh on 2009-11-19 19:39:25 as
	Micros for microbes: non-coding regulatory RNAs in bacteria. [My Copy] Trends Genet, Vol. 21, No. 7. (July 2005), pp. 399-404. by S. Gottesman posted to rna non-coding bacterial by dayjm on 2009-11-18 19:42:59 as along with 9 people and 3 groups imouthesmp sglandt marcius balabu cdawson comb leemary4 saru ricardolds BioinfoCIPF SGU-CIPF GIG
	The two ages of the RNA world, and the transition to the DNA world: a story of viruses and cells. [My Copy] Biochimie, Vol. 87, No. 9-10. (t 2005), pp. 793-803. by P. Forterre posted to rna-world rna origins general_virus general_rna dna by dayjm on 2009-11-18 19:39:55 as along with 4 people and 4 groups marcius ruudvanleeuwen dchughes whastings G4ID BioinfoCIPF SGU-CIPF Genetics-of-Gambling
	Experimental approaches to identify non-coding RNAs. [My Copy] Nucleic Acids Res, Vol. 34, No. 2. (2006), pp. 635-646. by A. Hüttenhofer, J. Vogel posted to rna non-coding molecular_methods by dayjm on 2009-11-18 19:35:24 as along with 9 people and 7 groups myrtilus marcius eweaver perrywoo dchughes tabu mtagaya cdawson bsmagic Bioinformatics G4ID BioinfoCIPF bioinplant SGU-CIPF GIG Genetics-of-Gambling
	Computation for ChIP-seq and RNA-seq studies [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to transcriptome statistics rna methods epigenetics chipseq-project bioinformatics annotation by epigenetics to the group molnet-macs on 2009-11-18 13:35:59 as along with 22 people and 1 group Jporci pst timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais Orengo Group Journal Picks
	Initiation of decay of Bacillus subtilis trp leader RNA [My Copy] Journal of Biological Chemistry, Vol. 282, No. 28. (13 July 2007), pp. 20238-20244. by Gintaras Deikus, David H. Bechhofer posted to trp transcription termination subtilis stability rna leader decay bacillus by Winzer on 2009-11-18 11:00:03 as
	ncRNAppi - A tool for identifying disease-related miRNA and siR-NA targeting pathways. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 23. (6 October 2009), pp. 3199-3201. by Ka-Lok L. Ng, Hsueh-Chuan C. Liu, Shan-Chih C. Lee posted to rna mirna database data-integration data by kshameer on 2009-11-18 04:07:09 as along with 3 people renatomilani daforerog frohike
	MicroRNA isolation and stability in stored RNA samples. [My Copy] Biochemical and biophysical research communications, Vol. 390, No. 1. (4 December 2009), pp. 1-4. by M. Mraz, K. Malinova, J. Mayer, S. Pospisilova posted to stored stability samples rna microrna isolation in and by Stew to the group Bioinformatics - CRUK on 2009-11-17 14:42:39 as along with 2 people guhjy daforerog
	Simulations of RNA base pairs in a nanodroplet reveal solvation-dependent stability [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 30. (24 July 2007), pp. 12336-12340. by Michael T. Sykes, Michael Levitt posted to stability rna hydration by qshao on 2009-11-16 22:07:34 as along with 1 person and 1 group sobolevnrm baker-group
	Common evolutionary trends for SINE RNA structures [My Copy] Trends in Genetics, Vol. 23, No. 1. (January 2007), pp. 26-33. by Feng-Jie Sun, Sophie Fleurdepine, Cecile Bousquet-Antonelli, Gustavo Caetano-Anolles, Jean-Marc Deragon posted to transposon structure sine rna evolution by operon on 2009-11-16 18:47:04 as along with 2 people and 2 groups timflutre dchughes G4ID Genetics-of-Gambling
	Evidence for large diversity in the human transcriptome created by Alu RNA editing [My Copy] Nucl. Acids Res., Vol. 37, No. 20. (1 November 2009), pp. 6905-6915. by Michal Barak, Erez Y. Levanon, Eli Eisenberg, et al.Nurit Paz, Gideon Rechavi, George M. Church, Ramit Mehr posted to rna reference qpcr editing alu by fpattyn on 2009-11-16 09:15:40 as
	Amplification of RNA transcripts using terminal continuation [My Copy] Laboratory Investigation, Vol. 84, No. 1. (01 December 2003), pp. 131-137. by Shaoli Che, Stephen D. Ginsberg posted to rna amplification by mfgreen on 2009-11-12 17:38:26 as
	Comparison of amplification methods for transcriptomic analyses of low abundance prokaryotic RNA sources. [My Copy] J Microbiol Methods, Vol. 68, No. 2. (February 2007), pp. 385-391. by P. Francois, C. Garzoni, M. Bento, J. Schrenzel posted to rna amplification by mfgreen on 2009-11-12 17:27:57 as along with 2 people guhjy bakakaj
	Terminal continuation (TC) RNA amplification without second strand synthesis. [My Copy] Journal of neuroscience methods, Vol. 177, No. 2. (15 March 2009), pp. 381-385. by Melissa J. Alldred, Shaoli Che, Stephen D. Ginsberg posted to rna amplification by mfgreen on 2009-11-12 17:16:03 as along with 1 person guhjy
	Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (4 November 2009) by Todd M. Link, Poul Valentin-Hansen, Richard G. Brennan posted to structure small-motifs rna_binding rna by martainn on 2009-11-11 15:55:18 as
	Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes. [My Copy] Journal of molecular biology, Vol. 361, No. 5. (1 September 2006), pp. 1003-1034. by A. Maxwell Burroughs, Karen N. Allen, Debra Dunaway-Mariano, L. Aravind posted to superfolds structure rna fold-evolution exosome evolution by martainn on 2009-11-11 12:26:30 as along with 3 people robfsouza tny christiw
	Concordant Regulation of Translation and mRNA Abundance for Hundreds of Targets of a Human microRNA [My Copy] PLoS Biol, Vol. 7, No. 11. (10 November 2009), e1000238. by David G. Hendrickson, Daniel J. Hogan, Heather L. McCullough, et al.Jason W. Myers, Daniel Herschlag, James E. Ferrell, Patrick O. Brown posted to translation sucrose rna ribosomes microrna gradient gene expression decay by ericsuh on 2009-11-10 16:27:35 as along with 6 people and 1 group heliopais hrogers valeriehilgers gbloeb daforerog giovenko microRNA
	Mechanisms and functional implications of the degradation of host RNA polymerase II in influenza virus infected cells. [My Copy] Virology (27 October 2009) by Frank T. Vreede, Annie Y. Chan, Jane Sharps, Ervin Fodor posted to rna polymerase influenza by zwang on 2009-11-10 08:01:58 as
	Dynamical networks in tRNA:protein complexes [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6620-6625. by Anurag Sethi, John Eargle, Alexis A. Black, Zaida Luthey-Schulten posted to rna protein network allostery by anuragsethi on 2009-11-09 04:25:50 as along with 4 people and 2 groups jeargle AbnerCYH jmccammon sobolevnrm McCammon baker-group
	Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R124. by Ana Marques, Chris Ponting posted to rna non-coding by gdb on 2009-11-08 15:51:37 as along with 5 people and 2 groups hrogers yogita bdessailly daforerog reyez Orengo Group Journal Picks Journal picks
	DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. [My Copy] Bioinformatics (Oxford, England) (24 October 2009), btp612. by Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, Xuegong Zhang posted to transcriptome seq rnaseq rna by ramonvidal on 2009-11-08 11:53:15 as along with 7 people hzoltan jmeppley heliopais GeeSharpMinor juokcho natstreet druvus
	A case of convergent evolution of nucleic acid binding modules. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 18, No. 4. (April 1996), pp. 309-315. by P. Graumann, M. A. Marahiel posted to small-motifs rna_binding rna fold-evolution by martainn on 2009-11-06 12:07:57 as
	Pre-mRNA processing reaches back to transcription and ahead to translation. [My Copy] Cell, Vol. 136, No. 4. (20 February 2009), pp. 688-700. by M. J. Moore, N. J. Proudfoot posted to translation transcription splicing rna polyadenylation by aprickett on 2009-11-05 15:04:36 as along with 2 people heliopais rschulz
	De novo computational prediction of non-coding RNA genes in prokaryotic genomes [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2897-2905. by Thao T. Tran, Fengfeng Zhou, Sarah Marshburn, Mark Stead, Sidney R. Kushner, Ying Xu posted to rna microbes annotation by djkt to the group iSEEM on 2009-11-04 17:41:30 as along with 4 people and 1 group TRHvidsten jmcq ppgardne druvus Journal picks
	Archaeal RNA polymerase. [My Copy] Current opinion in structural biology (30 October 2009) by Akira Hirata, Katsuhiko S. Murakami posted to structure rna review polymerase archaea by neils on 2009-11-03 22:19:13 as
	Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals [My Copy] Nature, Vol. 458, No. 7235. (01 February 2009), pp. 223-227. by Mitchell Guttman, Ido Amit, Manuel Garber, et al.Courtney French, Michael F. Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W. Carey, John P. Cassady, Moran N. Cabili, Rudolf Jaenisch, Tarjei S. Mikkelsen, Tyler Jacks, Nir Hacohen, Bradley E. Bernstein, Manolis Kellis, Aviv Regev, John L. Rinn, Eric S. Lander posted to rna nucleosome by rsaito on 2009-11-02 09:05:07 as along with 29 people and 2 groups hzoltan jwfoley greg mkiyer gdb YukaH galka8_diploma antonkratz bertelsen natstreet fenghezi TRHvidsten megraw tonamswish biomcgary inesdesantiago djkt samgj dchughes admash neils absterga cisevol jm12 WanderingAengus daforerog bpcusack ericsuh mhamada Chinnaiyan Lab JLab
	Non-coding RNA [My Copy] Hum. Mol. Genet., Vol. 15 Spec No 1, No. suppl_1. (15 April 2006), pp. R17-29. by John S. Mattick, Igor V. Makunin posted to rna ncrna by GeeSharpMinor on 2009-10-30 23:50:51 as along with 16 people and 7 groups danaiancu rb_india zanexu myrtilus tuck marcius eckart_bindewald tardigrade andersbj dchughes mtagaya scroft bsmagic cabbagezs bertelsen robertkofler Bioinformatics microRNA G4ID BioinfoCIPF bioinplant SGU-CIPF Genetics-of-Gambling
	The functional genomics of noncoding RNA. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5740. (2 September 2005), pp. 1527-1528. by John S. Mattick posted to rna ncrna by GeeSharpMinor on 2009-10-30 23:47:19 as along with 12 people and 8 groups coela biozhang2001 lyongu marcius alexg eckart_bindewald dchughes mtagaya cmm neveaire bsmagic jayster4 Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab BioinfoCIPF bioinplant SGU-CIPF
	Small non-coding RNAs and genomic imprinting. [My Copy] Cytogenetic and genome research, Vol. 113, No. 1-4. (2006), pp. 99-108. by H. Royo, M-L L. Bortolin, H. Seitz, J. Cavaillé posted to rna ncrna by GeeSharpMinor on 2009-10-30 23:44:24 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Waste not, want not--transcript excess in multicellular eukaryotes. [My Copy] Trends in genetics : TIG, Vol. 21, No. 5. (May 2005), pp. 287-288. by Jürgen Brosius posted to rna ncrna by GeeSharpMinor on 2009-10-30 23:44:17 as along with 2 people setar mtagaya
	Transcriptional Scaffolds for Heterochromatin Assembly [My Copy] Vol. 136, No. 4. (20 February 2009), pp. 610-614. by Hugh P. Cam, Ee S. Chen, Shiv I. S. Grewal posted to rna ncrna by GeeSharpMinor on 2009-10-30 23:42:17 as
	Small RNAs in transcriptional gene silencing and genome defence [My Copy] Nature, Vol. 457, No. 7228. (21 January 2009), pp. 413-420. by Danesh Moazed posted to rna ncrna by GeeSharpMinor on 2009-10-30 23:40:43 as along with 4 people guhjy jfr ealloza pablocarb
	Post-transcriptional regulation in cancer. [My Copy] Biology of the cell / under the auspices of the European Cell Biology Organization, Vol. 96, No. 7. (September 2004), pp. 479-498. by Yann Audic, Rebecca S. Hartley posted to rna proteins binding by hcoller on 2009-10-30 19:18:18 as
	Aberrant regulation of messenger RNA 3'-untranslated region in human cancer. [My Copy] Cellular oncology : the official journal of the International Society for Cellular Oncology, Vol. 29, No. 1. (2007), pp. 1-17. by Isabel López de Silanes, María Paz P. Quesada, Manel Esteller posted to rna protein binding by hcoller on 2009-10-30 19:15:06 as along with 1 person bertelsen
	Equilibrium Properties and Force-Driven Unfolding Pathways of RNA Molecules [My Copy] Physical Review Letters, Vol. 103, No. 18. (2009), 188102. by A. Imparato, A. Pelizzola, M. Zamparo posted to unfolding rna forces by edws on 2009-10-30 07:40:16 as along with 1 person samcho
	True identity of a diffraction pattern attributed to valyl tRNA. [My Copy] Nature, Vol. 303, No. 5914. (5 1983), pp. 195-196. by W. A. Hendrickson, B. E. Strandberg, A. Liljas, L. M. Amzel, E. E. Lattman posted to structure rna history crystallography crystallization by martainn on 2009-10-28 16:41:09 as
	Small RNA-dependent expression of secondary metabolism is controlled by Krebs cycle function in Pseudomonas fluorescens. [My Copy] The Journal of biological chemistry (19 October 2009) by Kasumi Takeuchi, Patrick Kiefer, Cornelia Reimmann, et al.Christoph Keel, Christophe Dubuis, Joëlle Rolli, Julia A. Vorholt, Dieter Haas posted to srna small secondary rna pseudomonas metabolism krebs fluorescens expression cycle by Winzer on 2009-10-27 09:13:10 as
	Assessing a novel room-temperature RNA storage medium for compatibility in microarray gene expression analysis. [My Copy] BioTechniques, Vol. 47, No. 2. (August 2009) by Gilberto E. Hernandez, Tony S. Mondala, Steven R. Head posted to rna methods by GeeSharpMinor on 2009-10-24 04:29:45 as
	Transcript length bias in RNA-seq data confounds systems biology. [My Copy] Biology direct, Vol. 4, No. 1. (16 April 2009), 14. by Alicia Oshlack, Matthew J. Wakefield posted to seq rna by juokcho on 2009-10-23 14:07:29 as along with 14 people and 1 group hzoltan manduca jwfoley debasis stubrown dswan jmcq guhjy woodson8 n00c ghattem xingxu cajunsushi bandrewfox SIMR bioinformatics
	Exploiting structural and topological information to improve prediction of RNA-protein binding sites. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (18 October 2009), 341. by Stefan R. Maetschke, Zheng Yuan posted to sites rna protein prediction motif binding by jlike on 2009-10-23 14:05:03 as along with 3 people and 1 group sillitoe reyez heliopais Orengo Group Journal Picks
	RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space [My Copy] Nucl. Acids Res., Vol. 31, No. 16. (15 August 2003), pp. 4755-4761. by Carlos M. Duarte, Leven M. Wadley, Anna M. Pyle posted to structural_bioinformatics rna by jwm on 2009-10-22 11:19:44 as along with 4 people and 3 groups marcius j3xucite condon emidio_capriotti beta BioinfoCIPF SGU-CIPF
	Crystal structure of human selenocysteine tRNA [My Copy] Nucl. Acids Res., Vol. 37, No. 18. (1 October 2009), pp. 6259-6268. by Yuzuru Itoh, Shiho Chiba, Shun-ichi Sekine, Shigeyuki Yokoyama posted to trna rna ncrna crystal_structure by ppgardne to the group Journal picks on 2009-10-20 08:55:45 as
	Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution [My Copy] Nature Protocols, Vol. 4, No. 10. (10 September 2009), pp. 1413-1421. by Stefanie A. Mortimer, Kevin M. Weeks posted to structure rna by zwang on 2009-10-20 07:38:29 as
	An Intergenic Non-Coding rRNA Correlated with Expression of the rRNA and Frequency of an rRNA Single Nucleotide Polymorphism in Lung Cancer Cells [My Copy] PLoS ONE, Vol. 4, No. 10. (19 October 2009), e7505. by Yih-Horng Shiao, Sorin T. Lupascu, Yuhan D. Gu, et al.Wojciech Kasprzak, Christopher J. Hwang, Janet R. Fields, Robert M. Leighty, Octavio Quiñones, Bruce A. Shapiro, W. Gregory Alvord, Lucy M. Anderson posted to single_nucleotide_polymorphism rna_genes rna noncoding ncrna lung_cancer human_cancer by ppgardne to the group Journal picks on 2009-10-18 10:57:41 as along with 1 person daforerog
	Column-based method to simultaneously extract DNA, RNA, and proteins from the same sample. [My Copy] BioTechniques, Vol. 43, No. 6. (December 2007), pp. 799-804. by Jorge M. Tolosa, John E. Schjenken, Theodora D. Civiti, Vicki L. Clifton, Roger Smith posted to rna protein methods dna by GeeSharpMinor on 2009-10-16 04:40:27 as along with 1 person guhjy
	Simultaneous extraction of high-quality RNA and DNA from small tissue samples. [My Copy] The Journal of heredity, Vol. 100, No. 2. (7 October 2009), pp. 246-250. by Deborah A. Triant, Andrew Whitehead posted to rna methods dna by GeeSharpMinor on 2009-10-16 04:40:03 as along with 3 people guhjy Lauren_Jones nuin
	Isolation and solubilization of proteins after TRIzol extraction of RNA and DNA from patient material following prolonged storage. [My Copy] BioTechniques, Vol. 42, No. 4. (April 2007) by Amanda B. Hummon, Sharlene R. Lim, Michael J. Difilippantonio, Thomas Ried posted to rna protein methods dna by GeeSharpMinor on 2009-10-16 04:17:00 as along with 1 person guhjy
	A Nanostructure Made of a Bacterial Noncoding RNA. [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (12 October 2009) by Bastien Cayrol, Claude Nogues, Alexandre Dawid, Irit Sagi, Pascal Silberzan, Hervé Isambert posted to rna_structure rna ncrna nanostructure escherishia_coli by ppgardne to the group Journal picks on 2009-10-15 09:07:11 as along with 1 person qshao
	DUPLICATED RNA GENES IN TELEOST FISH GENOMES [My Copy] Journal of Bioinformatics and Computational Biology, Vol. 06, No. 06. (2008), 1157. by Dominic Rose, Julian Jöris, Jörg Hackermüller, Kristin Reiche, Qiang Li, Peter F. Stadler posted to rna by qiang on 2009-10-15 05:04:49 as
	Direct RNA sequencing. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 814-818. by Fatih Ozsolak, Adam R. Platt, Dan R. Jones, et al.Jeffrey G. Reifenberger, Lauryn E. Sass, Peter McInerney, John F. Thompson, Jayson Bowers, Mirna Jarosz, Patrice M. Milos posted to rna by mlc39 on 2009-10-14 17:05:20 as along with 20 people and 2 groups pmalkus hzoltan manduca gotgenes jwfoley GeeSharpMinor colinveal reyez TRHvidsten djkt ppgardne dchughes heliopais vingron nzm n00c lp2 toni_marco dswan kinestetika Journal picks Bioinformatics - CRUK

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structure	661
bioinformatics	319
review	280
secondary_structure	224
prediction	195
evolution	181
folding	179
secondary	154
dna	133
protein	133
biophysics	128
ncrna	112
ribosome	107
transcription	106
polymerase	91
microrna	82
algorithms	80
noncoding	79
expression	77
jarasch	74
alignment	72
pseudoknots	72
mirna	70
pseudoknot	66
genome	63
gene	62
motif	62
c_elegans	60
celegans	60
caenorhabditis_elegans	58
elegans	58
nematode	58
wormbase	58
splicing	56
article	52
epigenetics	51
non-coding	50
virus	50
function	49
mrna	49
sequencing	49
trna	47
database	43
small	43
regulation	42
sequence	42
ribozyme	41
translation	41
human	38
helicase	37
methods	37
rnai	37
yeast	37
comparative	36
tertiary	36
computational_biology	33
genomics	33
microarray	33
nmr	33
techniques	32
biology	31
editing	31
software	31
statistics	30
cloned_genes	28
design	28
interaction	28
metagenomics	28
chromatin	27
sirna	27
bio	26
development	26
arabidopsis	25
cancer	25
binding	24
bioengineering	24
degradation	24
search	24
sequence_alignment	24
classification	23
la	23
printed	22
rna_motif	22
transcriptome	22
utr	22
aptamer	21
drosophila	21
gene-regulation	21
interference	21
algorithm	20
cell	20
genetics	20
unread	20
genetic	19
hiv	19
kinetics	19
network	19
molecular	18
selex	18
simulation	18

Tag rna [at least 200 articles] Export

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