Tag rna [at least 200 articles] Export

Recent papers classified by the tag rna.

	DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. [My Copy] Bioinformatics (Oxford, England) (24 October 2009), btp612. by Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, Xuegong Zhang posted to transcriptome seq rnaseq rna by ramonvidal on 2009-11-08 11:53:15 as along with 6 people jmeppley heliopais GeeSharpMinor juokcho natstreet druvus
	A case of convergent evolution of nucleic acid binding modules. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 18, No. 4. (April 1996), pp. 309-315. by P. Graumann, M. A. Marahiel posted to small-motifs rna_binding rna fold-evolution by martainn on 2009-11-06 12:07:57 as
	Pre-mRNA processing reaches back to transcription and ahead to translation. [My Copy] Cell, Vol. 136, No. 4. (20 February 2009), pp. 688-700. by M. J. Moore, N. J. Proudfoot posted to translation transcription splicing rna polyadenylation by aprickett on 2009-11-05 15:04:36 as along with 2 people heliopais rschulz
	De novo computational prediction of non-coding RNA genes in prokaryotic genomes [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2897-2905. by Thao T. Tran, Fengfeng Zhou, Sarah Marshburn, Mark Stead, Sidney R. Kushner, Ying Xu posted to rna microbes annotation by djkt to the group iSEEM on 2009-11-04 17:41:30 as along with 4 people and 1 group TRHvidsten jmcq ppgardne druvus Journal picks
	Archaeal RNA polymerase. [My Copy] Current opinion in structural biology (30 October 2009) by Akira Hirata, Katsuhiko S. Murakami posted to structure rna review polymerase archaea by neils on 2009-11-03 22:19:13 as
	Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. [My Copy] Nature, Vol. 458, No. 7235. (12 March 2009), pp. 223-227. by Mitchell Guttman, Ido Amit, Manuel Garber, et al.Courtney French, Michael F. Lin, David Feldser, Maite Huarte, Or Zuk, Bryce W. Carey, John P. Cassady, Moran N. Cabili, Rudolf Jaenisch, Tarjei S. Mikkelsen, Tyler Jacks, Nir Hacohen, Bradley E. Bernstein, Manolis Kellis, Aviv Regev, John L. Rinn, Eric S. Lander posted to rna nucleosome by rsaito on 2009-11-02 09:05:07 as along with 27 people and 2 groups greg mkiyer gdb YukaH galka8_diploma antonkratz bertelsen natstreet fenghezi TRHvidsten megraw tonamswish biomcgary inesdesantiago djkt samgj dchughes admash neils absterga cisevol jm12 WanderingAengus daforerog bpcusack ericsuh mhamada Chinnaiyan Lab JLab
	Non-coding RNA [My Copy] Hum. Mol. Genet., Vol. 15 Spec No 1, No. suppl_1. (15 April 2006), pp. R17-29. by John S. Mattick, Igor V. Makunin posted to rna ncrna by GeeSharpMinor on 2009-10-30 23:50:51 as along with 16 people and 7 groups danaiancu rb_india zanexu myrtilus tuck marcius eckart_bindewald tardigrade andersbj dchughes mtagaya scroft bsmagic cabbagezs bertelsen robertkofler Bioinformatics microRNA G4ID BioinfoCIPF bioinplant SGU-CIPF Genetics-of-Gambling
	The functional genomics of noncoding RNA. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5740. (2 September 2005), pp. 1527-1528. by John S. Mattick posted to rna ncrna by GeeSharpMinor on 2009-10-30 23:47:19 as along with 12 people and 8 groups coela biozhang2001 lyongu marcius alexg eckart_bindewald dchughes mtagaya cmm neveaire bsmagic jayster4 Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab BioinfoCIPF bioinplant SGU-CIPF
	Small non-coding RNAs and genomic imprinting. [My Copy] Cytogenetic and genome research, Vol. 113, No. 1-4. (2006), pp. 99-108. by H. Royo, M-L L. Bortolin, H. Seitz, J. Cavaillé posted to rna ncrna by GeeSharpMinor on 2009-10-30 23:44:24 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Waste not, want not--transcript excess in multicellular eukaryotes. [My Copy] Trends in genetics : TIG, Vol. 21, No. 5. (May 2005), pp. 287-288. by Jürgen Brosius posted to rna ncrna by GeeSharpMinor on 2009-10-30 23:44:17 as along with 2 people setar mtagaya
	Transcriptional Scaffolds for Heterochromatin Assembly [My Copy] Vol. 136, No. 4. (20 February 2009), pp. 610-614. by Hugh P. Cam, Ee S. Chen, Shiv I. S. Grewal posted to rna ncrna by GeeSharpMinor on 2009-10-30 23:42:17 as
	Small RNAs in transcriptional gene silencing and genome defence [My Copy] Nature, Vol. 457, No. 7228. (21 January 2009), pp. 413-420. by Danesh Moazed posted to rna ncrna by GeeSharpMinor on 2009-10-30 23:40:43 as along with 4 people guhjy jfr ealloza pablocarb
	Post-transcriptional regulation in cancer. [My Copy] Biology of the cell / under the auspices of the European Cell Biology Organization, Vol. 96, No. 7. (September 2004), pp. 479-498. by Yann Audic, Rebecca S. Hartley posted to rna proteins binding by hcoller on 2009-10-30 19:18:18 as
	Aberrant regulation of messenger RNA 3'-untranslated region in human cancer. [My Copy] Cellular oncology : the official journal of the International Society for Cellular Oncology, Vol. 29, No. 1. (2007), pp. 1-17. by Isabel López de Silanes, María Paz P. Quesada, Manel Esteller posted to rna protein binding by hcoller on 2009-10-30 19:15:06 as along with 1 person bertelsen
	Equilibrium Properties and Force-Driven Unfolding Pathways of RNA Molecules [My Copy] Physical Review Letters, Vol. 103, No. 18. (2009), 188102. by A. Imparato, A. Pelizzola, M. Zamparo posted to unfolding rna forces by edws on 2009-10-30 07:40:16 as along with 1 person samcho
	A global view of the nonprotein-coding transcriptome in Plasmodium falciparum [My Copy] Nucl. Acids Res. (28 October 2009), gkp895. by Carsten A. Raabe, Cecilia P. Sanchez, Gerrit Randau, et al.Thomas Robeck, Boris V. Skryabin, Suresh V. Chinni, Michael Kube, Richard Reinhardt, Guey H. Ng, Ravichandran Manickam, Vladimir Y. Kuryshev, Michael Lanzer, Juergen Brosius, Thean H. Tang, Timofey S. Rozhdestvensky posted to rna malaria by GeeSharpMinor on 2009-10-30 01:38:39 as along with 1 group Journal picks
	True identity of a diffraction pattern attributed to valyl tRNA. [My Copy] Nature, Vol. 303, No. 5914. (5 1983), pp. 195-196. by W. A. Hendrickson, B. E. Strandberg, A. Liljas, L. M. Amzel, E. E. Lattman posted to structure rna history crystallography crystallization by martainn on 2009-10-28 16:41:09 as
	Small RNA-dependent expression of secondary metabolism is controlled by Krebs cycle function in Pseudomonas fluorescens. [My Copy] The Journal of biological chemistry (19 October 2009) by Kasumi Takeuchi, Patrick Kiefer, Cornelia Reimmann, et al.Christoph Keel, Christophe Dubuis, Joëlle Rolli, Julia A. Vorholt, Dieter Haas posted to srna small secondary rna pseudomonas metabolism krebs fluorescens expression cycle by Winzer on 2009-10-27 09:13:10 as
	Assessing a novel room-temperature RNA storage medium for compatibility in microarray gene expression analysis. [My Copy] BioTechniques, Vol. 47, No. 2. (August 2009) by Gilberto E. Hernandez, Tony S. Mondala, Steven R. Head posted to rna methods by GeeSharpMinor on 2009-10-24 04:29:45 as
	Transcript length bias in RNA-seq data confounds systems biology [My Copy] Biology Direct, Vol. 4, No. 1. (16 April 2009), 14. by Alicia Oshlack, Matthew Wakefield posted to seq rna by juokcho on 2009-10-23 14:07:29 as along with 12 people and 1 group jwfoley debasis stubrown dswan jmcq guhjy woodson8 n00c ghattem xingxu cajunsushi bandrewfox SIMR bioinformatics
	Exploiting structural and topological information to improve prediction of RNA-protein binding sites. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (18 October 2009), 341. by Stefan R. Maetschke, Zheng Yuan posted to sites rna protein prediction motif binding by jlike on 2009-10-23 14:05:03 as along with 3 people and 1 group sillitoe reyez heliopais Orengo Group Journal Picks
	RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space [My Copy] Nucl. Acids Res., Vol. 31, No. 16. (15 August 2003), pp. 4755-4761. by Carlos M. Duarte, Leven M. Wadley, Anna M. Pyle posted to structural_bioinformatics rna by jwm on 2009-10-22 11:19:44 as along with 4 people and 3 groups marcius j3xucite condon emidio_capriotti beta BioinfoCIPF SGU-CIPF
	Crystal structure of human selenocysteine tRNA [My Copy] Nucl. Acids Res., Vol. 37, No. 18. (1 October 2009), pp. 6259-6268. by Yuzuru Itoh, Shiho Chiba, Shun-ichi Sekine, Shigeyuki Yokoyama posted to trna rna ncrna crystal_structure by ppgardne to the group Journal picks on 2009-10-20 08:55:45 as
	Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution [My Copy] Nature Protocols, Vol. 4, No. 10. (10 September 2009), pp. 1413-1421. by Stefanie A. Mortimer, Kevin M. Weeks posted to structure rna by zwang on 2009-10-20 07:38:29 as
	An Intergenic Non-Coding rRNA Correlated with Expression of the rRNA and Frequency of an rRNA Single Nucleotide Polymorphism in Lung Cancer Cells [My Copy] PLoS ONE, Vol. 4, No. 10. (19 October 2009), e7505. by Yih-Horng Shiao, Sorin T. Lupascu, Yuhan D. Gu, et al.Wojciech Kasprzak, Christopher J. Hwang, Janet R. Fields, Robert M. Leighty, Octavio Quiñones, Bruce A. Shapiro, W. Gregory Alvord, Lucy M. Anderson posted to single_nucleotide_polymorphism rna_genes rna noncoding ncrna lung_cancer human_cancer by ppgardne to the group Journal picks on 2009-10-18 10:57:41 as along with 1 person daforerog
	Column-based method to simultaneously extract DNA, RNA, and proteins from the same sample. [My Copy] BioTechniques, Vol. 43, No. 6. (December 2007), pp. 799-804. by Jorge M. Tolosa, John E. Schjenken, Theodora D. Civiti, Vicki L. Clifton, Roger Smith posted to rna protein methods dna by GeeSharpMinor on 2009-10-16 04:40:27 as along with 1 person guhjy
	Simultaneous extraction of high-quality RNA and DNA from small tissue samples. [My Copy] The Journal of heredity, Vol. 100, No. 2. (7 October 2009), pp. 246-250. by Deborah A. Triant, Andrew Whitehead posted to rna methods dna by GeeSharpMinor on 2009-10-16 04:40:03 as along with 3 people guhjy Lauren_Jones nuin
	Isolation and solubilization of proteins after TRIzol extraction of RNA and DNA from patient material following prolonged storage. [My Copy] BioTechniques, Vol. 42, No. 4. (April 2007) by Amanda B. Hummon, Sharlene R. Lim, Michael J. Difilippantonio, Thomas Ried posted to rna protein methods dna by GeeSharpMinor on 2009-10-16 04:17:00 as along with 1 person guhjy
	A Nanostructure Made of a Bacterial Noncoding RNA. [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (12 October 2009) by Bastien Cayrol, Claude Nogues, Alexandre Dawid, Irit Sagi, Pascal Silberzan, Hervé Isambert posted to rna_structure rna ncrna nanostructure escherishia_coli by ppgardne to the group Journal picks on 2009-10-15 09:07:11 as along with 1 person qshao
	DUPLICATED RNA GENES IN TELEOST FISH GENOMES [My Copy] Journal of Bioinformatics and Computational Biology, Vol. 06, No. 06. (2008), 1157. by Dominic Rose, Julian Jöris, Jörg Hackermüller, Kristin Reiche, Qiang Li, Peter F. Stadler posted to rna by qiang on 2009-10-15 05:04:49 as
	Direct RNA sequencing [My Copy] Nature, Vol. 461, No. 7265. (23 September 2009), pp. 814-818. by Fatih Ozsolak, Adam R. Platt, Dan R. Jones, et al.Jeffrey G. Reifenberger, Lauryn E. Sass, Peter McInerney, John F. Thompson, Jayson Bowers, Mirna Jarosz, Patrice M. Milos posted to rna by mlc39 on 2009-10-14 17:05:20 as along with 17 people and 2 groups gotgenes jwfoley GeeSharpMinor colinveal reyez TRHvidsten djkt ppgardne dchughes heliopais vingron nzm n00c lp2 toni_marco dswan kinestetika Journal picks Bioinformatics - CRUK
	Multi-species stochastic models: small RNA regulation of gene expression [My Copy] (13 Oct 2009) by Vlad Elgart posted to stochastic rna mathematical_model gene_regulation gene_expression biophysics by jjray on 2009-10-14 15:44:29 as
	Knowledge-Based Instantiation of Full Atomic Detail into Coarse Grain RNA 3D Structural Models [My Copy] Bioinformatics (7 October 2009), btp576. by Magdalena A. Jonikas, Randall J. Radmer, Russ B. Altman posted to structure rna model by zwang on 2009-10-14 09:45:06 as
	Fragile X-related protein and VIG associate with the RNA interference machinery [My Copy] Genes & Development, Vol. 16, No. 19. (1 October 2002), pp. 2491-2496. by Amy A. Caudy, Mike Myers, Gregory J. Hannon, Scott M. Hammond posted to rna protein microrna binding by hcoller on 2009-10-14 04:10:35 as
	The Evolutionary Rates of Eukaryotic RNA Polymerases and of Their Transcription Factors Are Affected by the Level of Concerted Evolution of the Genes They Transcribe [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2515-2520. by Robert Carter, Guy Drouin posted to tf rna evolution by djkt on 2009-10-12 17:54:09 as along with 2 people inesdesantiago samgj
	The equilibrium partition function and base pair binding probabilities for RNA secondary structure. [My Copy] Biopolymers, Vol. 29, No. 6-7. (n 1990), pp. 1105-1119. by J. S. McCaskill posted to vienna rna folding by saunders on 2009-10-12 10:45:48 as along with 9 people and 3 groups NicholasErho rb_india ellarond evaf marcius arcticrasta condon Hosna Kiarostami beta BioinfoCIPF SGU-CIPF
	Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. [My Copy] Nucleic acids research, Vol. 9, No. 1. (10 January 1981), pp. 133-148. by M. Zuker, P. Stiegler posted to vienna rna minimum free folding energy by saunders on 2009-10-12 10:43:02 as along with 10 people and 2 groups NicholasErho agrobledo gzm55 heliopais evaf marcius arcticrasta mtagaya Hosna guxiyou BioinfoCIPF SGU-CIPF
	Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 464. by Claudia Copeland, Manja Marz, Dominic Rose, et al.Jana Hertel, Paul Brindley, Clara B. Santana, Stephanie Kehr, Camille Stephan Otto Attolini, Peter Stadler posted to schistosomes rna ncrna homology_search helminth_parasites by ppgardne to the group Journal picks on 2009-10-11 14:03:48 as
	Human H1 promoter expressed short hairpin RNAs (shRNAs) suppress avian influenza virus replication in chicken CH-SAH and canine MDCK cells [My Copy] Antiviral Research, Vol. 84, No. 2. (06 November 2009), pp. 159-167. by Arusyak Abrahamyan, Éva Nagy, Serguei P. Golovan posted to virus rna replication inhibitor influenza human by zwang on 2009-10-10 09:32:54 as
	TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2625-2631. by Sanghamitra Bandyopadhyay, Ramkrishna Mitra posted to rna motif by djkt on 2009-10-09 16:36:18 as along with 8 people and 2 groups jforment heliopais dswan reyez morrislab TRHvidsten guhjy frohike Bioinformatics Core Service microRNA
	The Genetic Signatures of Noncoding RNAs [My Copy] PLoS Genet, Vol. 5, No. 4. (24 April 2009), e1000459. by John S. Mattick posted to signature rna non-coding genetic by Zephyrus on 2009-10-08 15:15:00 as along with 21 people and 2 groups antonkratz bertelsen frohike natstreet guhjy gdb giovenko galka8_diploma aditi9783 daforerog ealloza dpollard hrogers coela ilyashl fenghezi reyez maximilianh giovanni djkt stajich RockmanLab Mycology
	The Structural Basis of Ribosome Activity in Peptide Bond Synthesis [My Copy] Science, Vol. 289, No. 5481. (11 August 2000), pp. 920-930. by Poul Nissen, Jeffrey Hansen, Nenad Ban, Peter B. Moore, Thomas A. Steitz posted to structure rna ribosome activity by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-10-07 11:33:03 as along with 5 people gzm55 reyez jarasch ThomasBecker bratwurst
	The Complete Atomic Structure of the Large Ribosomal Subunit at 2.4 A Resolution [My Copy] Science, Vol. 289, No. 5481. (11 August 2000), pp. 905-920. by Nenad Ban, Poul Nissen, Jeffrey Hansen, Peter B. Moore, Thomas A. Steitz posted to structure rna ribosome by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-10-07 11:29:01 as along with 5 people cactus mirkocortese P2324548 eckart_bindewald ruvido
	Inferring consensus structure from nucleic acid sequences [My Copy] Comput. Appl. Biosci., Vol. 7, No. 3. (1 July 1991), pp. 347-352. by David K. Y. Chiu, Ted Kolodziejczak posted to trna secondary_structure rna mutual_information covariance_model by jeargle on 2009-10-06 17:51:19 as
	Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods [My Copy] Nucl. Acids Res., Vol. 20, No. 21. (11 November 1992), pp. 5785-5795. by R. R. Gutell, A. Power, G. Z. Hertz, E. J. Putz, G. D. Stormo posted to trna secondary_structure rna mutual_information covariance_model by jeargle on 2009-10-06 17:48:04 as
	RNA regulation of epigenetic processes. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 31, No. 1. (January 2009), pp. 51-59. by John S. Mattick, Paulo P. Amaral, Marcel E. Dinger, Tim R. Mercer, Mark F. Mehler posted to signals rna-regulation rna regulation gene-regulation epigenome epigenetic environment chromosomes chromatin by bertelsen on 2009-10-06 00:41:53 as along with 3 people guhjy galka8_diploma rdowell
	Simulation of the structure and dynamics of nonhelical RNA motifs [My Copy] Current Opinion in Structural Biology, Vol. 10, No. 3. (01 June 2000), pp. 311-317. by M. Zacharias posted to simulation rna protein md interaction by aditi9783 on 2009-10-05 20:58:28 as
	Isolation of total RNA from baker’s yeast [My Copy] Applied Biochemistry and Microbiology, Vol. 42, No. 1. (28 January 2006), pp. 84-88. by T. Yamkovaya, V. Khomov, S. Zagrebelny, V. Yamkovoy posted to yeast rna extraction by biblio24 on 2009-10-05 13:38:08 as
	Two Small RNAs Encoded within the First 1.5 Kilobases of the Herpes Simplex Virus Type 1 Latency-Associated Transcript Can Inhibit Productive Infection and Cooperate To Inhibit Apoptosis [My Copy] J. Virol., Vol. 83, No. 18. (15 September 2009), pp. 9131-9139. by Wenwen Shen, Sa, Tareq Jaber, et al.Olga Vitvitskaia, Sumin Li, Gail Henderson, Clinton Jones posted to srna rna herpes_simplex_virus by ppgardne to the group Journal picks on 2009-10-05 13:25:09 as
	Molecular Dynamics and Quantum Mechanics of RNA: Conformational and Chemical Change We Can Believe In [My Copy] Accounts of Chemical Research, Vol. 0, No. 0. (0000) by Mark A. Ditzler, Michal Otyepka, Jiřì Šponer, Nils G. Walter posted to rna_dynamics rna quantum_mechanics nucleic_acid_structures md_simulations hydrogen_bonding conformational_changes computational_approaches by paridep on 2009-10-02 01:08:09 as along with 1 person qshao

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structure	658
bioinformatics	318
review	280
secondary_structure	224
prediction	195
evolution	179
folding	179
secondary	154
dna	132
protein	132
biophysics	128
ncrna	112
ribosome	107
transcription	104
polymerase	90
algorithms	80
noncoding	79
microrna	78
expression	75
jarasch	73
alignment	72
pseudoknots	72
mirna	69
pseudoknot	66
genome	63
motif	62
c_elegans	60
celegans	60
gene	60
caenorhabditis_elegans	58
elegans	58
nematode	58
wormbase	58
splicing	56
article	52
epigenetics	50
virus	50
function	49
mrna	49
sequencing	49
non-coding	47
trna	47
small	43
database	42
regulation	42
sequence	42
ribozyme	40
translation	39
human	38
helicase	37
rnai	37
yeast	37
comparative	36
methods	36
tertiary	36
computational_biology	33
genomics	33
microarray	33
nmr	33
techniques	32
biology	31
software	31
editing	30
statistics	29
cloned_genes	28
design	28
interaction	28
metagenomics	28
chromatin	27
sirna	27
bio	26
development	26
arabidopsis	25
cancer	25
binding	24
bioengineering	24
degradation	24
search	24
sequence_alignment	24
classification	23
la	23
printed	22
rna_motif	22
utr	22
aptamer	21
drosophila	21
gene-regulation	21
interference	21
algorithm	20
cell	20
genetics	20
transcriptome	20
unread	20
genetic	19
hiv	19
kinetics	19
molecular	18
network	18
selex	18
structure_prediction	18

Tag rna [at least 200 articles] Export

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