Tag rna-seq [141 articles] Export

Recent papers classified by the tag rna-seq.

	Novel Low Abundance and Transient RNAs in Yeast Revealed by Tiling Microarrays and Ultra High–Throughput Sequencing Are Not Conserved Across Closely Related Yeast Species [My Copy] PLoS Genet, Vol. 4, No. 12. (19 December 2008), e1000299. by Albert Lee, Kasper D. Hansen, James Bullard, Sandrine Dudoit, Gavin Sherlock posted to yeast rpkm rna-seq by torfinnnome on 2009-12-10 15:16:59 as along with 2 people cisevol djkt
	Optimal spliced alignments of short sequence reads. [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Rätsch posted to software sequencing rna-seq alternative_splicing algorithm by ongenetics on 2009-12-10 11:36:16 as along with 13 people and 1 group GustavoLacerda darshan n00c natstreet druvus lukaswindhager malcook jmcq nmohelli caseybrown cthachuk Ema Neeperando SIMR bioinformatics
	H-DBAS: human-transcriptome database for alternative splicing: update 2010 [My Copy] In Nucl. Acids Res. (7 December 2009), gkp984. by Jun-ichi Takeda, Yutaka Suzuki, Ryuichi Sakate, et al.Yoshiharu Sato, Takashi Gojobori, Tadashi Imanishi, Sumio Sugano posted to topha tool rna-seq eland_rna bioinfo alternative_splicing by tonamswish on 2009-12-08 13:53:42 as
	Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing [My Copy] Briefings in bioinformatics In Brief Bioinform (27 October 2009), bbp046. by David S. Horner, Giulio Pavesi, Tiziana Castrignano, et al.Paolo D. De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole posted to snps rna-seq review readmapping epigenomics chip-seq by darian on 2009-12-08 13:18:38 as along with 14 people and 1 group guhjy qm greg dullhunk michaelbarton heliopais elipapa burak torfinnnome operon wilbur kshameer renatomilani druvus Journal picks
	Current-generation high-throughput sequencing: deepening insights into mammalian transcriptomes [My Copy] Genes & Development In Genes & Development, Vol. 23, No. 12. (15 June 2009), pp. 1379-1386. by Benjamin J. Blencowe, Sidrah Ahmad, Leo J. Lee posted to transcriptome rna-seq review by n00c on 2009-12-08 12:41:39 as along with 6 people and 1 group cthachuk heliopais woodson8 guhjy fenghezi huali SIMR bioinformatics
	Applications of New Sequencing Technologies for Transcriptome Analysis [My Copy] Annual Review of Genomics and Human Genetics, Vol. 10, No. 1. (2009), pp. 135-151. by Olena Morozova, Martin Hirst, Marco A. Marra posted to transcriptome sage rna-seq review by n00c on 2009-12-08 12:37:06 as along with 5 people MarkFiers cthachuk heliopais usagi-kirin scmelton
	Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2613-2614. by Takehiro Hashimoto, Michiel J. L. de Hoon, Sean M. Grimmond, Carsten O. Daub, Yoshihide Hayashizaki, Geoffrey J. Faulkner posted to transcriptome tool software short-read rna-seq mumrescuelite by n00c on 2009-12-08 12:10:17 as along with 5 people and 1 group orzenil guhjy mkiyer natstreet druvus Chinnaiyan Lab
	deepBase: a database for deeply annotating and mining deep sequencing data. [My Copy] Nucleic acids research (4 December 2009) by Jian-Hua H. Yang, Peng Shao, Hui Zhou, Yue-Qin Q. Chen, Liang-Hu H. Qu posted to rna-seq database by cisevol on 2009-12-08 11:30:47 as
	RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing [My Copy] Methods, Vol. 48, No. 3. (28 July 2009), pp. 249-257. by Brian T. Wilhelm, Josette-Renée Landry posted to rna-seq review next-generation-sequencing by darian on 2009-12-07 14:43:05 as along with 11 people hzoltan manduca inesdesantiago heliopais orzenil n00c woodson8 guhjy tonamswish fenghezi GeeSharpMinor
	mRNA-sequencing whole transcriptome analysis of a single cell on the SOLiD system. [My Copy] Journal of biomolecular techniques : JBT, Vol. 20, No. 5. (December 2009), pp. 266-271. by Kai Q. Lao, Fuchou Tang, Catalin Barbacioru, et al.Yangzhou Wang, Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, Brain Tuch, John Bodeau, Asim Siddiqui, M. Azim Surani posted to solid single-cell rna-seq high-throughput-sequencing by heliopais to the group microRNA on 2009-12-07 13:44:25 as along with 1 person GeeSharpMinor
	Computation for ChIP-seq and RNA-seq studies [My Copy] Nature Methods In Nat Meth, Vol. 6, No. 11s. (15 October 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to software rna-seq review pipeline comparison chip-seq by n00c on 2009-12-03 15:39:10 as along with 27 people and 2 groups humburg fenghezi ongenetics urgi Jporci pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to sequencing rna-seq alternative_splicing by ongenetics on 2009-12-03 11:14:24 as along with 21 people hzoltan torfinnnome n00c ericrpaquet jonilaserson ThomasDOtto giovanni frohike fenghezi jfr zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	TopHat: discovering splice junctions with RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted to software sequencing rna-seq by ongenetics on 2009-12-03 11:02:40 as along with 26 people and 2 groups juokcho cthachuk hzoltan jwfoley heliopais dakelley druvus GustavoLacerda stubrown polivares torfinnnome jmcq mtagaya jonilaserson gdb guhjy ThomasDOtto n00c ghattem xingxu djkt vplagnol bertelsen natstreet idoerg vmsr BergmanLab SIMR bioinformatics
	Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 24. (15 December 2009), pp. 3207-3212. by Jacob F. Degner, John C. Marioni, Athma A. Pai, et al.Joseph K. Pickrell, Everlyne Nkadori, Yoav Gilad, Jonathan K. Pritchard posted to rna-seq maq mapping expression comparison bwa bowtie bias by n00c on 2009-12-02 18:23:29 as along with 8 people and 1 group jperkins humburg dakelley natstreet chvlyl papamicd torfinnnome heliopais Orengo Group Journal Picks
	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted to rna-seq by zufar on 2009-12-01 21:50:49 as along with 48 people and 3 groups AndersI cthachuk hzoltan jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda CPI UU SIMR bioinformatics Mycology
	RNA-Seq: a revolutionary tool for transcriptomics. [My Copy] Nature reviews. Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted to rna-seq by zufar on 2009-12-01 21:48:50 as along with 43 people and 1 group bsamal hongkeun_park ngehlenborg hzoltan sandfire maren jwfoley urgi RNA-protein cthachuk heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb n00c ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman cassj xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor CUBES
	The beginning of the end for microarrays? [My Copy] Nature Methods, Vol. 5, No. 7. (01 July 2008), pp. 585-587. by Jay Shendure posted to transcriptome sage rna-seq microarray est by n00c on 2009-12-01 14:00:37 as along with 17 people jmcq inesdesantiago burak sdvillal VGreiff Borelli bertelsen annaprotasio sanchezbuelna orzenil frohike myourshaw ChrisEvelo megraw kengg marck kintoki
	Transcriptomics: Digging deep with RNA-Seq [My Copy] Nature Reviews Genetics, Vol. 9, No. 8. (01 August 2008), pp. 568-568. by Louisa Flintoft posted to transcriptome rna-seq by n00c on 2009-12-01 13:59:58 as along with 1 person jmcq
	Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species [My Copy] BMC Genomics, Vol. 10, No. 1. (24 November 2009), 555. by Diana Bellin, Alberto Ferrarini, Antonio Chimento, et al.Olaf Kaiser, Natasha Levenkova, Pascal Bouffard, Massimo Delledonne posted to rna-seq by GeeSharpMinor on 2009-11-26 15:15:03 as along with 3 people jsatkosk torfinnnome druvus
	A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing. [My Copy] Nucleic acids research, Vol. 35, No. 19. (2007) by Poornima Parameswaran, Roxana Jalili, Li Tao, et al.Shadi Shokralla, Baback Gharizadeh, Mostafa Ronaghi, Andrew Z. Fire posted to thesis rna-seq barcode by manduca on 2009-11-23 04:24:39 as along with 8 people and 1 group heliopais stubrown jlgreen mikheyev jbhiatt pdexheimer alexisfjdufresne slevy03 iSEEM
	Relative power and sample size analysis on gene expression profiling data. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 439. by M. van Iterson, P. A. 't Hoen, P. Pedotti, et al.G. J. Hooiveld, J. T. den Dunnen, G. J. van Ommen, J. M. Boer, R. X. Menezes posted to thesis rna-seq by manduca on 2009-11-23 02:27:32 as along with 6 people and 1 group dswan Stew fenghezi mkiyer rdiaz barriot Bioinformatics - CRUK
	Identifiability of isoform deconvolution from junction arrays and RNA-Seq [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3056-3059. by David Hiller, Hui Jiang, Weihong Xu, Wing H. Wong posted to rna-seq next_generation_sequencing bioinformatics by AlexBateman to the group Journal picks on 2009-11-19 12:51:56 as along with 6 people and 1 group jwfoley djkt hzoltan cajunsushi ghattem GeeSharpMinor SIMR bioinformatics
	Mapping and quantifying mammalian transcriptomes by RNA-Seq [My Copy] Nature Methods In Nat Meth, Vol. 5, No. 7. (30 May 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted to rna-seq ngs by cthachuk on 2009-11-17 22:09:46 as along with 44 people and 2 groups cajunsushi davidmam manduca hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb Bioinformatics SIMR bioinformatics
	Genome-wide mapping of alternative splicing in Arabidopsis thaliana [My Copy] Genome Research (26 October 2009) by Sergei A. Filichkin, Henry D. Priest, Scott A. Givan, et al.Rongkun Shen, Douglas W. Bryant, Samuel E. Fox, Weng-Keen Wong, Todd C. Mockler posted to rust rna-seq nmd arabidopsis by cajunsushi on 2009-11-17 02:29:39 as along with 4 people bpcusack kshameer GeeSharpMinor natstreet
	Statistical inferences for isoform expression in RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 1026-1032. by Hui Jiang, Wing H. Wong posted to rna-seq data_analysis by jwfoley on 2009-11-13 17:00:21 as along with 16 people and 2 groups hzoltan heliopais stubrown GustavoLacerda woodson8 ThomasDOtto stajich guhjy ghattem djkt shikin pengchy vplagnol rschulz jmcq GeeSharpMinor Mycology SIMR bioinformatics
	Direct multiplexed measurement of gene expression with color-coded probe pairs. [My Copy] Nature biotechnology, Vol. 26, No. 3. (17 March 2008), pp. 317-325. by Gary K. Geiss, Roger E. Bumgarner, Brian Birditt, et al.Timothy Dahl, Naeem Dowidar, Dwayne L. Dunaway, H. Perry Fell, Sean Ferree, Renee D. George, Tammy Grogan, Jeffrey J. James, Malini Maysuria, Jeffrey D. Mitton, Paola Oliveri, Jennifer L. Osborn, Tao Peng, Amber L. Ratcliffe, Philippa J. Webster, Eric H. Davidson, Leroy Hood, Krassen Dimitrov posted to rna-seq by manduca on 2009-11-12 04:43:57 as along with 9 people and 2 groups pmalkus robert guhjy austin vplagnol GeeSharpMinor shikin psique jfr GeneGo parkinson's disease references
	Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing [My Copy] The ISME Journal, Vol. 3, No. 7. (02 April 2009), pp. 792-796. by Ben Temperton, Dawn Field, Anna Oliver, et al.Bela Tiwari, Martin Muhling, Ian Joint, Jack A. Gilbert posted to rna-seq by manduca on 2009-11-12 04:42:50 as along with 3 people seb1 Thaverkamp jmeppley
	Improved protocols for the illumina genome analyzer sequencing system. [My Copy] Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.], Vol. Chapter 18 (July 2009) by Michael A. Quail, Harold Swerdlow, Daniel J. Turner posted to rna-seq by manduca on 2009-11-12 04:42:05 as along with 2 people and 1 group rschulz katholt Journal picks
	Allele-specific expression assays using Solexa. [My Copy] BMC genomics, Vol. 10, No. 1. (9 September 2009), 422. by Bradley J. Main, Ryan D. Bickel, Lauren M. McIntyre, Rita M. Graze, Peter P. Calabrese, Sergey V. Nuzhdin posted to rna-seq by manduca on 2009-11-12 04:41:53 as along with 2 people sebastien_vigneau natstreet
	PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample. [My Copy] Applied and environmental microbiology, Vol. 71, No. 12. (December 2005), pp. 8966-8969. by Silvia G. Acinas, Ramahi Sarma-Rupavtarm, Vanja Klepac-Ceraj, Martin F. Polz posted to rna-seq by manduca on 2009-11-12 04:32:37 as along with 2 people vrich Olaf_Ilzins
	Transcript length bias in RNA-seq data confounds systems biology. [My Copy] Biology direct, Vol. 4, No. 1. (16 April 2009), 14. by Alicia Oshlack, Matthew J. Wakefield posted to rna-seq by manduca on 2009-11-12 04:14:22 as along with 14 people and 1 group hzoltan jwfoley juokcho debasis stubrown dswan jmcq guhjy woodson8 n00c ghattem xingxu cajunsushi bandrewfox SIMR bioinformatics
	Transcript quantification with RNA-Seq data [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 13. (19 October 2009), P5. by Regina Bohnert, Jonas Behr, Gunnar Ratsch posted to rna-seq data_analysis by jwfoley on 2009-11-12 01:38:04 as along with 3 people hzoltan inesdesantiago heliopais
	Gene expression profiling by massively parallel sequencing [My Copy] Genome research In Genome Research, Vol. 18, No. 1. (21 January 2008), pp. 172-177. by Tatiana T. Torres, Muralidhar Metta, Birgit OttenwÃ¤lder, Christian SchlÃ¶tterer posted to rna-seq by manduca on 2009-11-12 01:18:23 as along with 20 people chriscole oannes hzoltan n00c druvus daed floatingpoint inesdesantiago orzenil guhjy jfr dchughes stsaft echinotrix giovanni caseybrown ghattem idonaldson ohara gracio
	Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1239-1243. by Brian T. Wilhelm, Samuel Marguerat, Stephen Watt, et al.Falk Schubert, Valerie Wood, Ian Goodhead, Christopher J. Penkett, Jane Rogers, Jürg Bähler posted to rna-seq by manduca on 2009-11-12 01:16:07 as along with 14 people and 1 group hzoltan jmcq natstreet n00c TRHvidsten poschm michaelbarton caseybrown myourshaw djkt jonathanjacobs GeeSharpMinor guhjy semrich Molecular Biology
	High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity [My Copy] BMC Genetics, Vol. 10, No. 1. (05 October 2009), 63. by Weiyin Zhou, Margaret Calciano, Heather Jordan, et al.Michael Brenner, Seth Johnson, Darong Wu, Lin Lei, Diego Pallares, Pascale Beurdeley, Fabien Rouet, Pritmohinder Gill, Laurent Bracco, Cyril Soucaille, Richard Einstein posted to rna-seq by GeeSharpMinor on 2009-11-11 21:15:53 as along with 1 person torfinnnome
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (2 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to tool rna-seq bioinfo by tonamswish on 2009-11-09 18:04:04 as along with 28 people and 2 groups humburg hzoltan darian dakelley inesdesantiago Thaverkamp idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil operon guhjy kongl stajich n00c torfinnnome nuin kshameer neils druvus natstreet BergmanLab Mycology
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to rna-seq by darshan on 2009-11-07 16:11:56 as along with 38 people and 2 groups seninp heliopais hzoltan cthachuk adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	Characterizing natural variation using next-generation sequencing technologies [My Copy] Trends in Genetics, Vol. 25, No. 10. (02 October 2009), pp. 463-471. by Yoav Gilad, Jonathan K. Pritchard, Kevin Thornton posted to rna-seq review by jwfoley on 2009-11-06 18:27:18 as along with 5 people and 1 group operon skembel djkt n00c natstreet iSEEM
	De novo transcriptome assembly with ABySS [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2872-2877. by Inanc Birol, Shaun D. Jackman, Cydney B. Nielsen, et al.Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Doug E. Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J. M. Jones posted to transcriptome rna-seq novo de assembly by dswan on 2009-11-06 17:21:55 as along with 11 people orzenil n00c dakelley torfinnnome TRHvidsten rtogawa ramonvidal stubrown darshan GustavoLacerda druvus
	mRNA-Seq whole-transcriptome analysis of a single cell [My Copy] Nature Methods, Vol. 6, No. 5. (06 April 2009), pp. 377-382. by Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, et al.Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B. Tuch, Asim Siddiqui, Kaiqin Lao, M. Azim Surani posted to sequencing rna-seq by inesdesantiago on 2009-11-06 16:47:26 as along with 16 people hzoltan jfr heliopais manduca debasis Vincent_Rouilly mtagaya woodson8 gdb guhjy kintoki fenghezi absterga jbhiatt pengchy sleepingcell
	An integrated pipeline for next-generation sequencing and annotation of mitochondrial genomes [My Copy] Nucl. Acids Res. In Nucl. Acids Res. (5 November 2009), gkp883. by Aaron R. Jex, Ross S. Hall, Littlewood, Robin B. Gasser posted to rna-seq by juokcho on 2009-11-06 11:53:05 as along with 2 people druvus n00c
	ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D868-872. by Helen Parkinson, Misha Kapushesky, Nikolay Kolesnikov, et al.Gabriella Rustici, Mohammad Shojatalab, Niran Abeygunawardena, Hugo Berube, Miroslaw Dylag, Ibrahim Emam, Anna Farne, Ele Holloway, Margus Lukk, James Malone, Roby Mani, Ekaterina Pilicheva, Tim F. Rayner, Faisal Rezwan, Anjan Sharma, Eleanor Williams, Xiangqun Z. Bradley, Tomasz Adamusiak, Marco Brandizi, Tony Burdett, Richard Coulson, Maria Krestyaninova, Pavel Kurnosov, Eamonn Maguire, Sudeshna G. Neogi, Philippe Rocca-Serra, Susanna-Assunta Sansone, Nataliya Sklyar, Mengyao Zhao, Ugis Sarkans, Alvis Brazma posted to rna-seq repository microarray gene-expression functional-genomics database atlas by bertelsen on 2009-11-05 22:40:22 as along with 9 people ptrobajo daforerog guhjy samfromklamart vkwn Borelli jfr kittipat abizar
	Next Generation Sequencing in Nonmodel Organisms: Has the Future Arrived? [My Copy] The Journal of heredity (2 November 2009) by Mattias L. Johansson posted to rna-seq by GeeSharpMinor on 2009-11-05 17:09:09 as
	Whole genome transcriptome analysis. [My Copy] RNA biology, Vol. 6, No. 2. (n 2009), pp. 107-112. by Alistair R. Forrest, Piero Carninci posted to rna-seq by GeeSharpMinor on 2009-11-05 17:08:59 as
	Identification of suitable normalizing genes for quantitative real-time RT-PCR analysis of gene expression in fetal mouse gonads. [My Copy] Sexual development : genetics, molecular biology, evolution, endocrinology, embryology, and pathology of sex determination and differentiation, Vol. 3, No. 4. (2009), pp. 194-204. by T. Svingen, C. M. Spiller, K. Kashimada, V. R. Harley, P. Koopman posted to sex rna-seq mouse data_analysis by jwfoley on 2009-11-04 02:35:14 as
	Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 218-223. by Nicholas T. Ingolia, Sina Ghaemmaghami, John R. S. Newman, Jonathan S. Weissman posted to rna-seq by jwfoley on 2009-11-04 02:25:39 as along with 18 people and 3 groups hzoltan yyfwuhan gbloeb guhjy dpollard fenghezi gangcai idonaldson coela fpattyn jbhiatt kshundyak absterga myzhang bertelsen VGreiff provero kinestetika RockmanLab NYU Journal Review microbiology_nijmegen
	High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer [My Copy] PLoS ONE, Vol. 4, No. 1. (1 January 2009), e4108. by Shin-ichi Hashimoto, Wei Qu, Budrul Ahsan, et al.Katsumi Ogoshi, Atsushi Sasaki, Yoichiro Nakatani, Yongjun Lee, Masako Ogawa, Akio Ametani, Yutaka Suzuki, Sumio Sugano, Clarence C. Lee, Robert C. Nutter, Shinichi Morishita, Kouji Matsushima posted to rna-seq by jwfoley on 2009-11-04 02:24:51 as along with 8 people and 1 group tprpip guhjy poschm jfr jasontsai GustavoLacerda Cortel stajich Mycology
	Stem cell transcriptome profiling via massive-scale mRNA sequencing [My Copy] Nature Methods, Vol. 5, No. 7. (30 May 2008), pp. 613-619. by Nicole Cloonan, Alistair R. R. Forrest, Gabriel Kolle, et al.Brooke B. A. Gardiner, Geoffrey J. Faulkner, Mellissa K. Brown, Darrin F. Taylor, Anita L. Steptoe, Shivangi Wani, Graeme Bethel, Alan J. Robertson, Andrew C. Perkins, Stephen J. Bruce, Clarence C. Lee, Swati S. Ranade, Heather E. Peckham, Jonathan M. Manning, Kevin J. McKernan, Sean M. Grimmond posted to rna-seq by jwfoley on 2009-11-04 02:23:53 as along with 22 people manduca hzoltan heliopais jmanning2k stubrown cassj n00c burak natstreet poschm felsani jbhiatt vplagnol rschulz umit myourshaw megraw inesdesantiago GeeSharpMinor caseybrown guhjy gdb
	Determination of tag density required for digital transcriptome analysis: Application to an androgen-sensitive prostate cancer model [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20179-20184. by Hairi Li, Michael T. Lovci, Young-Soo Kwon, Michael G. Rosenfeld, Xiang-Dong Fu, Gene W. Yeo posted to rna-seq data_analysis by jwfoley on 2009-11-03 19:06:08 as along with 3 people guhjy xingxu abizar
	Direct RNA sequencing [My Copy] Nature, Vol. 461, No. 7265. (23 September 2009), pp. 814-818. by Fatih Ozsolak, Adam R. Platt, Dan R. Jones, et al.Jeffrey G. Reifenberger, Lauryn E. Sass, Peter McInerney, John F. Thompson, Jayson Bowers, Mirna Jarosz, Patrice M. Milos posted to rna-seq by jwfoley on 2009-11-03 18:58:53 as along with 20 people and 2 groups pmalkus hzoltan manduca gotgenes GeeSharpMinor mlc39 colinveal reyez TRHvidsten djkt ppgardne dchughes heliopais vingron nzm n00c lp2 toni_marco dswan kinestetika Journal picks Bioinformatics - CRUK

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transcriptome	37
review	28
sequencing	22
short-read	17
microarray	15
ngs	14
chip-seq	13
mapping	12
illumina	11
splicing	11
deep-seq	10
mouse	10
software	10
454	8
comparison	8
data_analysis	8
brain	7
rna	7
snp	7
tool	7
analysis	6
bias	6
exon	6
expression	6
gene-expression	6
human	6
method	6
next_generation	6
solexa	6
transcriptomics	6
alternative_splicing	5
assembly	5
bioinformatics	5
breast	5
cancer	5
genome	5
high-throughput-sequencing	5
jennifer-beane	5
liver	5
microrna	5
muscle	5
seq	5
short-reads	5
yeast	5
alignment	4
alternative-splicing	4
database	4
methods	4
nextgen_sequencing	4
proteomics	4
read_mapping	4
solid	4
tissue-specific	4
transcript	4
transcription	4
adipose	3
bioinfo	3
bt474	3
cerebellum	3
colon	3
epigenetics	3
genomics	3
heart	3
hme	3
imprinting	3
isoform	3
length	3
lymph-node	3
mb435	3
mcf7	3
microarrays	3
peak_calling	3
rnaseq	3
sage	3
single-cell	3
splice	3
t47d	3
testis	3
utr	3
wide_mapping	3
13-nov-09	2
alternative	2
as	2
bowtie	2
chip	2
content	2
deep-sequencing	2
gc	2
ma	2
malaria	2
mammalian	2
methodology	2
network	2
placenta	2
promoter	2
qpalma	2
quantifying	2
repository	2
snps	2
transcriptomes	2

Tag rna-seq [141 articles] Export

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