Tag rrna [72 articles] Export

Recent papers classified by the tag rrna.

	rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (January 2009) by Zarraz May-Ping M. Lee, Carl Bussema, Thomas M. Schmidt posted to rrna_gene rrna copy-number-variation copy-number 16s by idoerg on 2009-11-27 23:30:37 as
	Protistan Diversity Estimates Based on 18S rDNA from Seawater Incubations in the Western North Atlantic<sup>1</sup> [My Copy] The Journal of Eukaryotic Microbiology, Vol. 52, No. 2. (r 2005), pp. 95-106. by Peter D. Countway, Rebecca J. Gast, I. Pratik Sava, David A. Caron posted to rrna protists microbial-ecology microbial-diversity methods diversity 18srrna 18s by idoerg on 2009-11-26 20:24:15 as along with 1 person and 1 group jdelcampo Microbial-Ecology
	Mechanism of ribosome assisted protein folding: a new insight into rRNA functions. [My Copy] Biochemical and biophysical research communications, Vol. 384, No. 2. (26 June 2009), pp. 137-140. by Dibyendu Samanta, Anindita Das, Arpita Bhattacharya, Arunima Basu, Debasis Das, Chanchal DasGupta posted to rrna ribosome function folding co-translation by saunders on 2009-11-10 13:52:42 as
	ORMA: a tool for identification of species-specific variations in 16S rRNA gene and oligonucleotides design [My Copy] Nucl. Acids Res., Vol. 37, No. 16. (1 September 2009), e109. by Marco Severgnini, Paola Cremonesi, Clarissa Consolandi, Giada Caredda, Gianluca De Bellis, Bianca Castiglioni posted to sequence_specificity rrna ribosomal_rna probes_design probes oligonucleotides_design oligonucleotides by jforment to the group Bioinformatics Core Service on 2009-10-21 12:13:35 as
	Digital transcriptome profiling using selective hexamer priming for cDNA synthesis. [My Copy] Nature methods, Vol. 6, No. 9. (9 September 2009), pp. 647-649. by Christopher D. Armour, John C. Castle, Ronghua Chen, et al.Tomas Babak, Patrick Loerch, Stuart Jackson, Jyoti K. Shah, John Dey, Carol A. Rohl, Jason M. Johnson, Christopher K. Raymond posted to rrna ribosomal depletion by sconlan on 2009-10-05 16:46:18 as along with 2 people and 1 group gbloeb danmaclean Bioinformatics
	Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 86, No. 23. (December 1989), pp. 9355-9359. by N. Iwabe, K. Kuma, M. Hasegawa, S. Osawa, T. Miyata posted to rrna phylogenetic_tree evolution ef-tu archaea by jeargle on 2009-09-25 19:11:12 as
	Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates [My Copy] Environmental Microbiology, Vol. 9999, No. 9999. (2009) by Victor Kunin, Anna Engelbrektson, Howard Ochman, Philip Hugenholtz posted to sequencing-error rrna pyrosequencing diversity 454-sequencing 16s-rrna by jmeppley on 2009-09-14 18:28:56 as along with 3 people and 1 group n00c jgill skembel iSEEM
	Subcellular localization of a bacterial regulatory RNA [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 38. (22 September 2009), pp. 16405-16409. by Jay H. Russell, Kenneth C. Keiler posted to translation spatial rrna localization gene_regulation bacteria by jjray on 2009-09-13 06:16:46 as
	Exploring translation regulation by global analysis of ribosomal association [My Copy] Methods, Vol. 48, No. 3. (06 July 2009), pp. 301-305. by Daniel Melamed, Erez Eliyahu, Yoav Arava posted to method rrna by guhjy on 2009-07-28 04:11:58 as
	Affinity purification of ribosomes to access the translatome [My Copy] Methods, Vol. 48, No. 3. (04 July 2009), pp. 306-310. by Regula E. Halbeisen, Tanja Scherrer, André P. Gerber posted to method rrna by guhjy on 2009-07-28 04:11:50 as
	Does the ribosome have initiation and elongation modes of translation? [My Copy] Molecular Microbiology, Vol. 72, No. 6. (2009), pp. 1310-1315. by Tanel Tenson, Vasili Hauryliuk posted to rrna by guhjy on 2009-07-28 02:29:08 as
	Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 218-223. by Nicholas T. Ingolia, Sina Ghaemmaghami, John R. S. Newman, Jonathan S. Weissman posted to method protein rrna translation seq by guhjy on 2009-07-25 15:34:24 as along with 18 people and 3 groups hzoltan jwfoley yyfwuhan gbloeb dpollard fenghezi gangcai idonaldson coela fpattyn jbhiatt kshundyak absterga myzhang bertelsen VGreiff provero kinestetika RockmanLab NYU Journal Review microbiology_nijmegen
	Blocking primers to enhance PCR amplification of rare sequences in mixed samples - a case study on prey DNA in Antarctic krill stomachs. [My Copy] Frontiers in zoology, Vol. 5 (20 July 2008), 12. by H. Vestheim, S. N. Jarman posted to dna krill pcr predator prey rrna sequencing techniques zoology by behindtherabbit on 2009-07-14 19:51:22 as
	Intergenic transcripts regulate the epigenetic state of rRNA genes. [My Copy] Molecular cell, Vol. 22, No. 3. (5 May 2006), pp. 351-361. by C. Mayer, K. M. Schmitz, J. Li, I. Grummt, R. Santoro posted to igs ncrna rrna by galka8_diploma on 2009-07-11 18:41:16 as
	PCR primers to amplify 16S rRNA genes from cyanobacteria. [My Copy] Applied and environmental microbiology, Vol. 63, No. 8. (August 1997), pp. 3327-3332. by U. Nübel, F. Garcia-Pichel, G. Muyzer posted to cyanobacteria rrna by jwm on 2009-07-06 18:46:17 as
	Discovering structural cis-regulatory elements by modeling the behaviors of mRNAs. [My Copy] Molecular systems biology, Vol. 5 (28 April 2009) by B. C. Foat, G. D. Stormo posted to cis-regulatory rrna by cassj on 2009-07-06 15:27:32 as along with 3 people and 1 group psique dpollard TRHvidsten RockmanLab
	Phylogenetic relationships of Salmonella based on rRNA sequences. [My Copy] International journal of systematic bacteriology, Vol. 48 Pt 2 (April 1998), pp. 605-610. by H. Christensen, S. Nordentoft, J. E. Olsen posted to evolution rrna salmonella serovar by katholt on 2009-06-26 12:06:19 as
	Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. [My Copy] Applied and environmental microbiology, Vol. 72, No. 7. (July 2006), pp. 5069-5072. by T. Z. DeSantis, P. Hugenholtz, N. Larsen, et al.M. Rojas, E. L. Brodie, K. Keller, T. Huber, D. Dalevi, P. Hu, G. L. Andersen posted to 16s microbial-diversity microbiology rrna by idoerg on 2009-06-21 01:48:00 as along with 3 people and 1 group esyoun mcox djkt iSEEM
	Evolution of the RNA Polymerase B' Subunit Gene (rpoB') in Halobacteriales: a Complementary Molecular Marker to the SSU rRNA Gene [My Copy] Mol Biol Evol, Vol. 21, No. 12. (1 December 2004), pp. 2340-2351. by David A. Walsh, Eric Bapteste, Masahiro Kamekura, Ford W. Doolittle posted to 16s microbial-diversity rrna by idoerg on 2009-06-21 01:24:38 as
	Photosynthetic and Phylogenetic Primers for Detection of Anoxygenic Phototrophs in Natural Environments [My Copy] Appl. Environ. Microbiol., Vol. 67, No. 7. (1 July 2001), pp. 2922-2926. by Laurie A. Achenbach, Jennifer Carey, Michael T. Madigan posted to 16s microbial-diversity rrna by idoerg on 2009-06-21 01:21:54 as
	Use of 16S rRNA and rpoB Genes as Molecular Markers for Microbial Ecology Studies [My Copy] Appl. Environ. Microbiol., Vol. 73, No. 1. (1 January 2007), pp. 278-288. by Rebecca J. Case, Yan Boucher, Ingela Dahllof, Carola Holmstrom, Ford W. Doolittle, Staffan Kjelleberg posted to 16s microbial-diversity rrna by idoerg on 2009-06-21 00:17:39 as along with 1 person Olaf_Ilzins
	Survey and summary: transcription by RNA polymerases I and III. [My Copy] Nucleic Acids Res, Vol. 28, No. 6. (15 March 2000), pp. 1283-1298. by M. R. Paule, R. J. White posted to rrna by soojinclass1 on 2009-04-24 15:46:15 as along with 1 person mtagaya
	Identification of ribosomal RNA genes in metagenomic fragments [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1338-1340. by Ying Huang, Paul Gilna, Weizhong Li posted to 16s-rrna community-genomics hmm rrna by jmeppley on 2009-04-10 18:09:01 as along with 2 people and 2 groups djkt Thaverkamp iSEEM Microbial-Ecology
	Genetic interrelationships of proteolyticClostridium botulinum types A, B, and F and other members of theClostridium botulinum complex as revealed by small-subunit rRNA gene sequences [My Copy] Antonie van Leeuwenhoek, Vol. 64, No. 3. (1 September 1993), pp. 273-283. by R. A. Hutson, D. E. Thompson, P. A. Lawson, R. P. Schocken-Itturino, E. C. Böttger, M. D. Collins posted to botulinum clostridium proteolytic rrna by Winzer on 2009-04-09 14:29:26 as
	Genetic interrelationships of saccharolytic Clostridium botulinum types B, E and F and related clostridia as revealed by small-subunit rRNA gene sequences. [My Copy] FEMS microbiology letters, Vol. 108, No. 1. (15 March 1993), pp. 103-110. by R. A. Hutson, D. E. Thompson, M. D. Collins posted to botulinum clostridia clostridium rrna saccharolytic by Winzer on 2009-04-09 14:23:37 as
	Global patterns in bacterial diversity [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 27. (3 July 2007), pp. 11436-11440. by Catherine A. Lozupone, Rob Knight posted to rrna by jonathaneisen on 2009-03-02 19:03:25 as along with 1 person and 1 group skembel iSEEM
	Evaluating different approaches that test whether microbial communities have the same structure [My Copy] ISME J, Vol. 2, No. 3. (31 January 2008), pp. 265-275. by Patrick D. Schloss posted to diversity rrna by jonathaneisen on 2009-03-02 18:54:42 as along with 5 people and 2 groups hexaquo taylor73 skembel djkt sconlan Waikato - Erebus iSEEM
	Supplemental programs for enhanced recovery of data from the DOTUR application [My Copy] Journal of Microbiological Methods, Vol. 75, No. 3. (December 2008), pp. 572-575. by S. Morales, T. Cosart, J. Johnson, W. Holben posted to diversity dotur rrna by jonathaneisen to the group iSEEM on 2009-03-02 18:53:29 as
	An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP) [My Copy] PLoS ONE, Vol. 3, No. 7. (2 July 2008), e2566. by Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A. Eisen posted to alignment phylogeny rrna software taxonomy by sriesenfeld on 2008-12-13 01:23:00 as along with 7 people and 4 groups Katje AaronDarling skembel druvus vaulot skato_toyaku djkt microbiology_nijmegen Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM
	Classification of methanogenic bacteria by 16S ribosomal RNA characterization. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 74, No. 10. (October 1977), pp. 4537-4541. by George E E. Fox, Linda J J. Magrum, William E E. Balch, Ralph S S. Wolfe, Carl R R. Woese posted to archaea printed rrna ssu by karinlag on 2008-12-04 16:29:20 as
	The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing [My Copy] PLoS Biol, Vol. 6, No. 11. (18 November 2008), e280. by Les Dethlefsen, Sue Huse, Mitchell L. Sogin, David A. Relman posted to 16s-rrna diversity human-microbiology rrna by jmeppley on 2008-12-01 01:57:17 as along with 7 people and 2 groups hexaquo azazello sconlan treangen skembel maggiecontreras djkt Waikato - Erebus iSEEM
	Stochasticity and traffic jams in the transcription of ribosomal RNA: Intriguing role of termination and antitermination [My Copy] Proceedings of the National Academy of Sciences (18 November 2008) by Stefan Klumpp, Terence Hwa posted to mathematical_model rrna stochastic transcription by jjray on 2008-11-19 18:24:51 as along with 2 people stk kshundyak
	The role of mitochondrial rRNAs and nanos protein in germline formation in Drosophila embryos. [My Copy] Zoological science, Vol. 22, No. 9. (September 2005), pp. 943-954. by S. Kobayashi, K. Sato, Y. Hayashi posted to drosophila nanos rrna by MSchipper on 2008-11-10 10:38:49 as
	Characterization of Aspergillus flavus strains from Brazilian Brazil nuts and cashew by RAPD and ribosomal DNA analysis [My Copy] Letters in Applied Microbiology, Vol. 47, No. 1. (July 2008), pp. 12-18. by Midorikawa, G.E.O., Pinheiro, et al. M.R.R., Vidigal, B.S., Arruda, M.C., Costa, F.F., Pappas, G.J., Ribeiro, S.G., Freire, F., Miller, R.N.G. posted to aflatoxin georgios rrna by gpappas on 2008-10-31 20:17:15 as
	Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers [My Copy] Nucl. Acids Res., Vol. 36, No. 18. (1 October 2008), e120. by Zongzhi Liu, Todd Z. Desantis, Gary L. Andersen, Rob Knight posted to 16s phylogeny ribosomal rrna sequencing by ojabado on 2008-10-22 17:56:17 as along with 5 people and 3 groups esyoun skembel sconlan vaulot jlgreen Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM
	XplorSeq: A software environment for integrated management and phylogenetic analysis of metagenomic sequence data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (07 October 2008), 420. by Daniel Frank posted to ribosomal rna rrna sequencing by ojabado on 2008-10-22 17:40:01 as along with 5 people and 3 groups vaulot jlgreen Thaverkamp treangen nuin Papers recommended by the Roscoff Plankton Group Microbial-Ecology iSEEM
	Molecular signatures of ribosomal evolution [My Copy] Proceedings of the National Academy of Sciences (2008) by Elijah Roberts, Anurag Sethi, Jonathan Montoya, Carl R. Woese, Zaida Luthey-Schulten posted to evolution rrna by skato_toyaku on 2008-09-17 04:51:10 as along with 3 people eroberts00 bpcusack sunhwan
	Presence and activity of anaerobic ammonium-oxidizing bacteria at deep-sea hydrothermal vents. [My Copy] The ISME journal, Vol. 3, No. 1. (31 January 2009), pp. 117-123. by Nathalie Byrne, Marc Strous, Valentin Crépeau, et al.Boran Kartal, Jean-Louis L. Birrien, Markus Schmid, Françoise Lesongeur, Stefan Schouten, Andrea Jaeschke, Mike Jetten, Daniel Prieur, Anne Godfroy posted to 15n 16s activity anammox dinitrogen gas ladderane lipids rrna thermophilic by mjetten on 2008-08-04 20:40:07 as along with 1 person and 1 group kinestetika anammox
	Posttranscriptional modifications in the A-loop of 23S rRNAs from selected archaea and eubacteria. [My Copy] RNA (New York, N.Y.), Vol. 8, No. 2. (February 2002), pp. 202-213. by M. A. Hansen, F. Kirpekar, W. Ritterbusch, B. Vester posted to 23s a-loop archaea eubacteria maasha modifications posttranscriptional ribosome rna rrna by maasha on 2008-06-23 07:32:49 as
	Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor. [My Copy] Environmental microbiology, Vol. 10, No. 11. (9 November 2008), pp. 3130-3139. by Zhe-Xue X. Quan, Sung-Keun K. Rhee, Jian-E E. Zuo, et al.Yang Yang, Jin-Woo W. Bae, Ja Ryeong R. Park, Sung-Taik T. Lee, Yong-Ha H. Park posted to 16s 23s anammox asiatica hydrazine hzo jettenia rrna by mjetten to the group anammox on 2008-06-03 12:38:14 as along with 1 group microbiology_nijmegen
	Estimating the Growth Rate of Slowly Growing Marine Bacteria from RNA Content [My Copy] Appl. Environ. Microbiol., Vol. 59, No. 8. (1 August 1993), pp. 2594-2601. by P. F. Kemp, S. Lee, J. Laroche posted to ribosome rrna by vrich on 2008-05-18 02:50:40 as
	A quantitative map of nucleotide substitution rates in bacterial rRNA. [My Copy] Nucleic acids research, Vol. 24, No. 17. (1 September 1996), pp. 3381-3391. by Y. Van de Peer, S. Chapelle, R. De Wachter posted to 16s bioinformatics diversity rrna by mcox on 2008-05-15 16:02:49 as
	Guiding ribose methylation of rRNA. [My Copy] Trends in biochemical sciences, Vol. 22, No. 7. (July 1997), pp. 257-261. by J. P. Bachellerie, J. Cavaillé posted to 18s human methylation rrna by mcox on 2008-05-15 15:44:50 as
	16S-23S rDNA intergenic spacer and 23S rDNA of anaerobic ammonium-oxidizing bacteria: implications for phylogeny and in situ detection. [My Copy] Environmental microbiology, Vol. 3, No. 7. (July 2001), pp. 450-459. by M. Schmid, S. Schmitz-Esser, M. Jetten, M. Wagner posted to 16s 23s activity anammox inhibition irs its oxygen rrna by mjetten to the group anammox on 2008-04-11 19:01:57 as along with 1 group microbiology_nijmegen
	Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping. [My Copy] RNA (6 February 2008) by Jonathan Esguerra, Jonas Warringer, Anders Blomberg posted to methylation ribosome rrna snorna snrna by sebastien_vigneau on 2008-02-18 10:50:29 as
	Functional interaction between bases C1049 in domain II and G2751 in domain VI of 23S rRNA in Escherichia coli ribosomes. [My Copy] Nucleic Acids Res (5 February 2008) by Tomohiro Miyoshi, Toshio Uchiumi posted to gtpase ribosome rrna stalk by Mochimasa on 2008-02-12 07:51:25 as
	Elucidating the Role of C/D snoRNA in rRNA Processing and Modification in Trypanosoma brucei [My Copy] Eukaryotic Cell, Vol. 7, No. 1. (1 January 2008), pp. 86-101. by Sarit Barth, Boaz Shalem, Avraham Hury, et al.Itai D. Tkacz, Xue-Hai Liang, Shai Uliel, Inna Myslyuk, Tirza Doniger, Mali Salmon-Divon, Ron Unger, Shulamit Michaeli posted to rrna snorna tbrucei trypanosome by stajich to the group Mycology on 2008-01-10 18:19:10 as
	Functions of the exosome in rRNA, snoRNA and snRNA synthesis. [My Copy] EMBO J, Vol. 18, No. 19. (1 October 1999), pp. 5399-5410. by C. Allmang, J. Kufel, G. Chanfreau, P. Mitchell, E. Petfalski, D. Tollervey posted to exosome rrna snorna by jrweir82 on 2007-11-09 13:26:05 as
	Roles of the HEAT repeat proteins Utp10 and Utp20 in 40S ribosome maturation [My Copy] RNA, Vol. 13, No. 9. (1 September 2007), pp. 1516-1527. by Christophe Dez, Mensur Dlakic, David Tollervey posted to rrna tramp trf4 trf5 by jrweir82 on 2007-11-09 09:29:49 as
	Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA [My Copy] RNA, Vol. 12, No. 3. (1 March 2006), pp. 508-521. by Sujatha Kadaba, Xuying Wang, James T. Anderson posted to hypomethylated_trna rrna tramp by jrweir82 on 2007-11-09 09:28:14 as

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16s	15
metagenomics	14
ribosome	10
diversity	8
23s	7
evolution	7
clostridium	6
microbial-diversity	6
ncrna	6
rna	6
snorna	5
16s-rrna	4
anammox	4
botulinum	4
case	4
drosophila	4
eukaryotes	4
microarray	4
phylogeny	4
sequencing	4
taxonomy	4
anger	3
archaea	3
expansion_segments	3
method	3
pcr	3
pyrosequencing	3
repeat	3
ribosomal	3
tramp	3
transcription	3
water	3
18s	2
acetogenic	2
activity	2
asiatica	2
bacteria	2
biogeography	2
bioinformatics	2
cerevisiae	2
clostridia	2
clostridial	2
dotur	2
folding	2
group	2
hmm	2
homology	2
human	2
hydrazine	2
hzo	2
i	2
jettenia	2
ljungdahlii	2
metageomics	2
methylation	2
microbial-ecology	2
mt	2
oligonucleotides	2
oligonucleotides_design	2
phylochip	2
phylogenetic	2
probes	2
probes_design	2
proteolytic	2
ribosomal_rna	2
saccharolytic	2
sea	2
sequence_specificity	2
species	2
stalk	2
tbrucei	2
translation	2
trypanosome	2
18srrna	1
actin	1
archea	1
chimerism	1
cis-regulatory	1
community-genomics	1
copy-number	1
cyanobacteria	1
depletion	1
ef-tu	1
function	1
gut	1
igs	1
l11	1
ladderane	1
localization	1
medical	1
microsporidia	1
rates	1
rna_rna_interaction	1
rrna_sequences	1
salmonella	1
stap	1
structure	1
thermophilic	1
tool	1
vairimorpha	1

Tag rrna [72 articles] Export

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