Tag sbml [77 articles] Export

Recent papers classified by the tag sbml.

	Pathway databases and tools for their exploitation: benefits, current limitations and challenges. [My Copy] Molecular systems biology, Vol. 5 (28 July 2009) by Anna Bauer-Mehren, Laura I. Furlong, Ferran Sanz posted to protein-interaction-network database wikipathways sbml reactome mint kegg intact hprd egfr biopax biocarta by frohike on 2009-12-11 15:40:50 as along with 9 people saman_vp dullhunk thomaskelder ngehlenborg ptrobajo allysonlister daforerog mingzhi renatomilani
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to sbml by agomez on 2009-12-10 12:17:10 as along with 42 people and 3 groups heliopais kshameer nuin singhsh greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari robertrentzsch ngehlenborg pekrau thegoose bertelsen fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell jandot megraw leliavski frohike fpattyn jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	What can metabolomics learn from genomics and proteomics? [My Copy] Current Opinion in Biotechnology, Vol. 20, No. 6. (21 December 2009), pp. 610-615. by Masanori Arita, posted to sbml metabolomics masanori-arita by dullhunk to the group Journal picks on 2009-12-09 11:04:17 as along with 1 person druvus
	Annotation and merging of SBML models with semanticSBML [My Copy] Bioinformatics (17 November 2009), btp642. by Falko Krause, Jannis Uhlendorf, Timo Lubitz, Marvin Schulz, Edda Klipp, Wolfram Liebermeister posted to semanticsbml sbml merging annotation by dagmar on 2009-11-20 06:56:53 as along with 2 people and 1 group dullhunk allysonlister Journal picks
	SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool. [My Copy] BMC bioinformatics, Vol. 9 (15 August 2008), 342. by Zhike Zi, Yanan Zheng, Ann E. Rundell, Edda Klipp posted to sensitivity_analyses sbml by jonathancooper on 2009-11-16 17:29:11 as along with 3 people renatomilani guhjy csgillespie
	Standards and ontologies in computational systems biology. [My Copy] Essays in biochemistry, Vol. 45 (2008), pp. 211-222. by Herbert M. Sauro, Frank T. Bergmann posted to software_tools sbml ontologies cellml best_practices by jonathancooper on 2009-11-16 17:27:27 as along with 2 people jmuhlich bertelsen
	Integrating BioPAX pathway knowledge with SBML models [My Copy] IET Systems Biology, Vol. 3, No. 5. (2009), pp. 317-328. by O. Ruebenacker, I. I. Moraru, J. C. Schaff, M. L. Blinov posted to systems-biology semantic-data-integration sbml data-integration biopax by allysonlister on 2009-11-16 11:19:06 as
	A method for visualizing CellML models. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 22. (15 November 2009), pp. 3012-3019. by S. M. Wimalaratne, M. D. Halstead, C. M. Lloyd, M. T. Cooling, E. J. Crampin, P. F. Nielsen posted to visualization semantics sbml ontologies model-annotation cellml by allysonlister on 2009-11-13 11:03:39 as along with 4 people mtaschuk dagmar dullhunk ngehlenborg
	Saint: a lightweight integration environment for model annotation [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3026-3027. by Allyson L. Lister, Matthew Pocock, Morgan Taschuk, Anil Wipat posted to sbml model lightweight integration environment annotation by dswan to the group Bioinformatics on 2009-11-06 17:27:20 as along with 3 people reyez dullhunk allysonlister
	libAnnotationSBML: a library for exploiting SBML annotations. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2292-2293. by Neil Swainston, Pedro Mendes posted to sbml by guhjy on 2009-10-27 03:53:51 as along with 7 people and 1 group irenas neilswainston jonathancooper jmuhlich jvb Effie dullhunk NaCTeM
	SubpathwayMiner: a software package for flexible identification of pathways. [My Copy] Nucleic acids research, Vol. 37, No. 19. (25 October 2009), gkp667. by Chunquan Li, Xia Li, Yingbo Miao, et al.Qianghu Wang, Wei Jiang, Chun Xu, Jing Li, Junwei Han, Fan Zhang, Binsheng Gong, Liangde Xu posted to software sbml r pathway opensource metabolic_engineering by Vincent_Rouilly on 2009-10-20 11:23:08 as along with 6 people and 1 group davidalee ptrobajo irenas renatomilani brianb neils Orengo Group Journal Picks
	A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology [My Copy] Nat Biotech, Vol. 26, No. 10. (09 October 2008), pp. 1155-1160. by Markus J. Herrgard, Neil Swainston, Paul Dobson, et al.Warwick B. Dunn, K. Yalcin Arga, Mikko Arvas, Nils Buthgen, Simon Borger, Roeland Costenoble, Matthias Heinemann, Michael Hucka, Nicolas Le Novere, Peter Li, Wolfram Liebermeister, Monica L. Mo, Ana P. Oliveira, Dina Petranovic, Stephen Pettifer, Evangelos Simeonidis, Kieran Smallbone, Irena Spasie, Dieter Weichart, Roger Brent, David S. Broomhead, Hans V. Westerhoff, Betul Kurdar, Merja Penttila, Edda Klipp, Bernhard O. Palsson, Uwe Sauer, Stephen G. Oliver, Pedro Mendes, Jens Nielsen, Douglas B. Kell posted to yeast systems-biology semantics sbml reconstruction modelling metabolism mcisb community_approach by pmendes on 2009-10-14 11:57:02 as along with 23 people and 2 groups dadiamah m_j windman83 jfr raiyar neilswainston irenas JeremyZucker chasmand schwartzjmc pinney pauldobson alaninmcr allysonlister zwang guhjy dbk michaelbarton ptrobajo neils dullhunk pengchy tmmurali MetabolicModeling BergmanLab
	KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (08 October 2009), 324. by Konstantinos Moutselos, Ioannis Kanaris, Aristotelis Chatziioannou, Ilias Maglogiannis, Fragiskos Kolisis posted to systems-biology sbml kgml kegg by dullhunk on 2009-10-12 11:48:21 as along with 9 people and 1 group bertelsen tonamswish Thaverkamp sillitoe trogdor druvus ptrobajo reyez renatomilani Orengo Group Journal Picks
	The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models [My Copy] Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 524-531. by M. Hucka, A. Finney, H. M. Sauro, et al.H. Bolouri, J. C. Doyle, H. Kitano, A. P. Arkin, B. J. Bornstein, D. Bray, A. Cornish-Bowden, A. A. Cuellar, S. Dronov, E. D. Gilles, M. Ginkel, V. Gor, I. I. Goryanin, W. J. Hedley, T. C. Hodgman, J. H. Hofmeyr, P. J. Hunter, N. S. Juty, J. L. Kasberger, A. Kremling, U. Kummer, N. Le Novère, L. M. Loew, D. Lucio, P. Mendes, E. Minch, E. D. Mjolsness, Y. Nakayama, M. R. Nelson, P. F. Nielsen, T. Sakurada, J. C. Schaff, B. E. Shapiro, T. S. Shimizu, H. D. Spence, J. Stelling, K. Takahashi, M. Tomita, J. Wagner, J. Wang posted to sbml by jporternj on 2009-09-30 20:39:44 as along with 20 people and 2 groups daforerog whitead antonkratz michaelbarton allysonlister rh020 shikin subhacom irenas husain easr balajis wnpx jbchang lenov nicholasflann pmendes csanford AlexanderPico dullhunk Jiang Research Group dbk-lab
	BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems [My Copy] Nucleic Acids Research, Vol. 34, No. Database Issue. (1 January 2006), pp. D689-D691. by Nicolas Le Novère, Benjamin Bornstein, Alexander Broicher, et al.Mélanie Courtot, Marco Donizelli, Harish Dharuri, Lu Li, Herbert Sauro, Maria Schilstra, Bruce Shapiro, Jacky L. Snoep, Michael Hucka posted to sbml database by jporternj on 2009-09-23 20:35:05 as along with 11 people and 2 groups irenas yujiangwang peterli behindtherabbit allysonlister shikin wnpx dullhunk dagmar lenov pmendes dIEMoSIRIS compneur
	Minimum information requested in the annotation of biochemical models (MIRIAM) [My Copy] Nature Biotechnology, Vol. 23, No. 12. (06 December 2005), pp. 1509-1515. by Nicolas L. Novere, Andrew Finney, Michael Hucka, et al.Upinder S. Bhalla, Fabien Campagne, Julio Collado-Vides, Edmund J. Crampin, Matt Halstead, Edda Klipp, Pedro Mendes, Poul Nielsen, Herbert Sauro, Bruce Shapiro, Jacky L. Snoep, Hugh D. Spence, Barry L. Wanner posted to sbwiki sbml ontology model annotation by jmuhlich on 2009-09-09 23:53:12 as along with 16 people and 2 groups mtaschuk perkeo irenas bertelsen moonhouse schwartzjmc tjtaylor Vincent_Rouilly allysonlister michaelbarton subhacom dullhunk dagmar lenov pmendes leilaperie dIEMoSIRIS compneur
	Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 24. (15 December 2005), pp. 4401-4407. by L. Strömbäck, P. Lambrix posted to sbml psi-mi psi pathway biopax by fgibson on 2009-08-25 11:01:16 as along with 6 people and 2 groups allysonlister agomez kuhn balajis wnpx dagmar dIEMoSIRIS compneur
	Comparing simulation results of SBML capable simulators. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 17. (1 September 2008), pp. 1963-1965. by Frank T. Bergmann, Herbert M. Sauro posted to validation systems-biology simulation sbml by peterli on 2009-08-16 10:15:42 as along with 7 people Vincent_Rouilly agomez guhjy ozzy11111 dullhunk sjcockell reyez
	LibSBML: an API library for SBML. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 6. (15 March 2008), pp. 880-881. by Benjamin J. Bornstein, Sarah M. Keating, Akiya Jouraku, Michael Hucka posted to sbml software standards by allysonlister on 2009-07-13 14:49:46 as along with 11 people dadiamah bertelsen silverballer47 jvb schwartzjmc agomez guhjy dullhunk lenov maralena pmendes
	MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007), 58. by Camille Laibe, Nicolas Le Novere posted to modelling sbml software web-services by allysonlister on 2009-07-13 11:26:51 as along with 7 people perkeo dagmar guhjy tmmurali lenov jfr AlexanderPico
	An Efficient Storage Model for the SBML Documents Using Object Databases [My Copy] Data Mining and Bioinformatics (2006), pp. 94-105. by Seung-Hyun Jung, Tae-Sung Jung, Tae-Kyung Kim, Kyoung-Ran Kim, Jae-Soo Yoo, Wan-Sup Cho posted to sbml by lflorez on 2009-07-13 10:08:01 as along with 2 people dagmar honglian
	Cell system ontology: representation for modeling, visualizing, and simulating biological pathways. [My Copy] In silico biology, Vol. 7, No. 6. (2007), pp. 623-638. by E. Jeong, M. Nagasaki, A. Saito, S. Miyano posted to biopax cellml cso ontologies sbml by allysonlister on 2009-07-08 10:48:37 as along with 3 people and 1 group thegoose2 tharris guhjy C. elegans / WormBase
	Representing, storing and accessing molecular interaction data: a review of models and tools. [My Copy] Briefings in bioinformatics, Vol. 7, No. 4. (December 2006), pp. 331-338. by L. Strömbäck, V. Jakoniene, H. Tan, P. Lambrix posted to biopax ontologies psimi review-articles sbml by allysonlister on 2009-07-08 10:40:36 as along with 6 people and 1 group Cortel yas balajis cjeans bootsy annacarina07 8_01
	SBMLmerge, a system for combining biochemical network models. [My Copy] Genome informatics. International Conference on Genome Informatics, Vol. 17, No. 1. (2006), pp. 62-71. by M. Schulz, J. Uhlendorf, E. Klipp, W. Liebermeister posted to ontology sbml vph by jonathancooper on 2009-06-15 11:45:24 as along with 2 people and 1 group dagmar lenov dIEMoSIRIS
	SBML2L(A)T(E)X: conversion of SBML files into human-readable reports. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 11. (1 June 2009), pp. 1455-1456. by Andreas Dräger, Hannes Planatscher, Dieudonné Motsou Wouamba, et al.Adrian Schröder, Michael Hucka, Lukas Endler, Martin Golebiewski, Wolfgang Müller, Andreas Zell posted to bioinfo sbml tool by tonamswish on 2009-06-02 04:58:52 as along with 6 people and 1 group jfr sobolevnrm dullhunk guhjy nuin renatomilani baker-group
	Rules for modeling signal-transduction systems. [My Copy] Sci STKE, Vol. 2006, No. 344. (17 July 2006) by W. S. Hlavacek, J. R. Faeder, M. L. Blinov, R. G. Posner, M. Hucka, W. Fontana posted to bioinfo review sbml tool by tonamswish on 2009-06-02 04:53:30 as along with 5 people aheilbut jjray wnpx eukfn josepe
	Intelligently deciphering unintelligible designs: algorithmic algebraic model checking in systems biology [My Copy] Journal of The Royal Society Interface, Vol. 6, No. 36. (6 July 2009), pp. 575-597. by Bud Mishra posted to duncanhull history logic robert-stevens rule rules sbml systems-biology by pauldobson on 2009-06-01 14:46:38 as
	GNU MCSim: Bayesian statistical inference for SBML-coded systems biology models [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1453-1454. by Frédéric Y. Y. Bois posted to software sbml bayes by guhjy on 2009-05-29 04:58:49 as along with 1 person and 1 group sobolevnrm baker-group
	High-Quality Binary Protein Interaction Map of the Yeast Interactome Network [My Copy] Science, Vol. 322, No. 5898. (3 October 2008), pp. 104-110. by Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, et al.Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amelie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-Laszlo Barabasi, Jan Tavernier, David E. Hill, Marc Vidal posted to interaction-network protein protein-interaction reconstruction saccharomyces sbml yeast by pauldobson on 2009-05-18 23:41:17 as along with 27 people and 1 group aceol mgomes nzm cabbagezs mariap3636 semin roys phoenixzxl kintoki jbhiatt elenaz jfr ocs cerca ptrobajo carlk zwang gracio reyez mdperry dullhunk Petersarkies grahamc yeastyboy guhjy maralena neils BenosLab
	COPASI--a COmplex PAthway SImulator. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 24. (15 December 2006), pp. 3067-3074. by Stefan Hoops, Sven Sahle, Ralph Gauges, et al.Christine Lee, Jürgen Pahle, Natalia Simus, Mudita Singhal, Liang Xu, Pedro Mendes, Ursula Kummer posted to copasi sbml by peterli on 2009-05-18 13:56:01 as along with 11 people and 3 groups dadiamah jvb yujiangwang schwartzjmc tonamswish agomez guhjy dragonrez carmaus dagmar pmendes dIEMoSIRIS MoSi-Rostock compneur
	Progress being made on standards for use in data sharing [My Copy] Nature, Vol. 456, No. 7218. (05 November 2008), pp. 29-29. by Douglas B. Kell posted to sbml standards systems-biology by pmendes on 2009-05-07 10:54:22 as along with 3 people applebyb druvus dullhunk
	Model storage, exchange and integration [My Copy] BMC Neuroscience, Vol. 7, No. Suppl 1. (2006), S11. by Nicolas Le Novere posted to data-standards modelling sbml sbo standards systems-biology by allysonlister on 2009-04-23 13:08:40 as along with 3 people and 2 groups rh020 irenas dagmar dIEMoSIRIS compneur
	SED-ML – An XML Format for the Implementation of the MIASE Guidelines [My Copy] Computational Methods in Systems Biology (2008), pp. 176-190. by Dagmar Köhn, Nicolas Le Novère posted to cellml modelling sbml simulation standards by Vincent_Rouilly on 2009-04-22 14:16:26 as
	Web-based applications for building, managing and analysing kinetic models of biological systems. [My Copy] Briefings in bioinformatics (19 September 2008) by Dong-Yup Y. Lee, Rajib Saha, Faraaz Noor Khan N. Yusufi, Wonjun Park, Iftekhar A A. Karimi posted to sbml software by agomez on 2009-04-14 17:21:06 as along with 1 person dullhunk
	Automated manipulation of systems biology models using libSBML within Taverna workflows. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 2. (15 January 2008), pp. 287-289. by Peter Li, Tom Oinn, Stian Soiland, Douglas B. Kell posted to workflows web-services systems-biology sbml mcisb bioinformatics by pmendes on 2009-04-14 16:18:42 as along with 11 people and 1 group pekrau leemond31 Scis0000002 druvus guhjy chad_davis dullhunk fisherp bootsy dbk alanrw dbk-lab
	Overlapping functions of the yeast oxysterol-binding protein homologues. [My Copy] Genetics, Vol. 157, No. 3. (March 2001), pp. 1117-1140. by C. T. Beh, L. Cool, J. Phillips, J. Rine posted to combinations knockouts lipid lipidome metabolism modular-systems modularity multiple-knockouts network protein-function redundancy sbml simulation synergy systems-biology wilko by pauldobson on 2009-03-31 16:13:29 as
	Back in the water: the return of the inositol phosphates [My Copy] Nat Rev Mol Cell Biol, Vol. 2, No. 5. (May 2001), pp. 327-338. by Robin F. Irvine, Michael J. Schell posted to inositol-phosphates jamboree lipid lipidome network reconstruction sbml systems-biology by pauldobson on 2009-03-30 13:37:35 as
	CutDB: a proteolytic event database. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by Y. Igarashi, A. Eroshkin, S. Gramatikova, et al.K. Gramatikoff, Y. Zhang, J. W. Smith, A. L. Osterman, A. Godzik posted to moonlighting ontology promiscuity rule rules sbml systems-biology by pauldobson on 2009-03-28 07:06:30 as along with 1 person guhjy
	Systems Biology Metabolic Modeling Assistant (SBMM): An on-tology-based tool for the integration of metabolic data in kinetic modeling. [My Copy] Bioinformatics (Oxford, England) (2 February 2009) by Armando Reyes-Palomares, Raul Montañez, Alejando Del Real-Chicharro, et al.Othmane Chniber, Amine Kerzazi, Ismael Navas-Delgado, Miguel Ángel A. Medina, José Aldana A. Montes, Francisca Sánchez-Jiménez posted to flux kegg sbml by mdstobbe on 2009-03-25 12:29:45 as along with 6 people and 1 group sobolevnrm agomez imina dagmar allysonlister dullhunk baker-group
	Version control of pathway models using XML patches. [My Copy] BMC systems biology, Vol. 3, No. 1. (2009), 34. by Peter Saffrey, Richard Orton posted to modelling sbml versioning by allysonlister on 2009-03-24 08:29:06 as along with 4 people irenas neilswainston dswan lptolik
	A comprehensive modular map of molecular interactions in RB/E2F pathway [My Copy] Mol Syst Biol, Vol. 4 (4 March 2008) by Laurence Calzone, Amelie Gelay, Andrei Zinovyev, Francois Radvanyl, Emmanuel Barillot posted to complex sbml signalling by agomez on 2009-03-21 03:29:02 as along with 4 people Sonix jfr zwang thomaskelder
	CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks [My Copy] Proceedings of the IEEE In Proceedings of the IEEE, Vol. 96, No. 8. (2008), pp. 1254-1265. by A. Funahashi, Y. Matsuoka, A. Jouraku, M. Morohashi, N. Kikuchi, H. Kitano posted to sbml software by agomez on 2009-03-21 02:15:22 as along with 1 person Cortel
	PROMOT: modular modeling for systems biology [My Copy] Bioinformatics, Vol. 25, No. 5. (1 March 2009), pp. 687-689. by Sebastian Mirschel, Katrin Steinmetz, Michael Rempel, Martin Ginkel, Ernst D. Gilles posted to sbml software by agomez on 2009-03-21 00:37:25 as along with 5 people jvb guhjy reyez pauldobson allysonlister
	Computational assignment of the EC numbers for genomic-scale analysis of enzymatic reactions. [My Copy] J Am Chem Soc, Vol. 126, No. 50. (22 December 2004), pp. 16487-16498. by M. Kotera, Y. Okuno, M. Hattori, S. Goto, M. Kanehisa posted to kegg metabolism reaction reconstruction rules sbml systems-biology by pauldobson on 2009-03-03 12:48:23 as along with 6 people shung JeremyZucker BragilMassoud alexg eweaver koerner
	Systematic analysis of enzyme-catalyzed reaction patterns and prediction of microbial biodegradation pathways. [My Copy] J Chem Inf Model, Vol. 47, No. 4. (g 2007), pp. 1702-1712. by M. Oh, T. Yamada, M. Hattori, S. Goto, M. Kanehisa posted to kegg metabolism reaction reconstruction rules sbml systems-biology by pauldobson on 2009-03-03 12:48:10 as along with 1 person kuhn
	CellDesigner: a process diagram editor for gene-regulatory and biochemical networks [My Copy] BIOSILICO, Vol. 1, No. 5. (05 November 2003), pp. 159-162. by A. Funahashi, M. Morohashi, H. Kitano, N. Tanimura posted to modelling sbml by lenov on 2009-01-20 15:26:19 as
	Applications of Semantic Web Methodologies and Techniques to Biology and Bioinformatics [My Copy] (2008), pp. 200-239. by Paolo Romano, Andrea Splendiani posted to andrea-splendiani biodash cites-taverna cytoscape hclsig paolo-romano sbml semantic-web by dullhunk on 2009-01-12 12:04:16 as along with 4 people Vincent_Rouilly druvus egonw fgibson
	ConsensusPathDB--a database for integrating human functional interaction networks. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (21 January 2009), gkn698. by Atanas Kamburov, Christoph Wierling, Hans Lehrach, Ralf Herwig posted to db good interaction pathway ppi sbml by guhjy on 2009-01-06 03:13:36 as along with 7 people irenas ptrobajo mdstobbe lptolik barriot thomaskelder renatomilani
	Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger [My Copy] Molecular Systems Biology, Vol. 4 (25 March 2008) by Mikael R. Andersen, Michael L. Nielsen, Jens Nielsen posted to aspergillus sbml by dullhunk on 2008-12-05 11:09:54 as along with 5 people dadiamah JeremyZucker schwartzjmc egonw westoll
	ALC: automated reduction of rule-based models [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Markus Koschorreck, Ernst D. Gilles posted to model sbml matlab by guhjy on 2008-11-15 02:56:55 as along with 2 people lptolik GeeSharpMinor

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systems-biology	39
software	19
modelling	18
standards	17
biopax	12
simulation	11
cellml	10
pathway	10
database	9
model	8
network	8
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kegg	7
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tool	3
bayes	2
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dt	2
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inositol-phosphates	2
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flux	1
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saccharomyces	1
sbml2latex	1
semantic-web	1
semanticsbml	1
sensitivity	1
signalling	1
validation	1
wikipathways	1

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