Tag scoring [178 articles] Export

Recent papers classified by the tag scoring.

	Structural artifacts in protein-ligand X-ray structures: implications for the development of docking scoring functions. [My Copy] Journal of medicinal chemistry, Vol. 52, No. 18. (24 September 2009), pp. 5673-5684. by Chresten R. Søndergaard, Alison Elizabeth E. Garrett, Tommy Carstensen, Gianluca Pollastri, Jens Erik E. Nielsen posted to scoring by skoddet on 2009-11-06 11:34:27 as along with 1 person massivemayhem
	Scoring Functions for De Novo Protein Structure Prediction Revisited [My Copy] Protein Structure Prediction (2008), pp. 243-281. by Shing-Chung Ngan, Ling-Hong Hung, Tianyun Liu, Ram Samudrala posted to scoring protein function folding by paddydu on 2009-09-17 13:51:40 as
	Towards the development of universal, fast and highly accurate docking/scoring methods: a long way to go [My Copy] British Journal of Pharmacology, Vol. 153, No. S1. (March 2008), pp. S7-S26. by N. Moitessier, P. Englebienne, D. Lee, J. Lawandi, C. R. Corbeil posted to scoring consensus by pmung on 2009-09-14 19:12:56 as
	Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions [My Copy] Journal of Molecular Biology, Vol. 268, No. 1. (25 April 1997), pp. 209-225. by K. Simons posted to scoring protein function folding bayesian by paddydu on 2009-09-14 16:34:00 as along with 11 people and 2 groups Diego_Prada reyez guxiyou ana jwm vavi wouterboomsma j3xucite hmk mijam joule structural_bioinformatics Bioinformatics
	Scoring functions in protein folding and design [My Copy] Protein Science, Vol. 9, No. 4. (April 2000), pp. 812-819. by Ruxandra I. Dima, Jayanth R. Banavar, Amos Maritan posted to scoring protein function folding by paddydu on 2009-09-11 16:16:21 as along with 1 person yylin
	Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 34, No. 1. (1999), pp. 82-95. by Kim T. Simons, Ingo Ruczinski, Charles Kooperberg, Brian A. Fox, Chris Bystroff, David Baker posted to scoring protein function folding by paddydu on 2009-09-11 16:14:16 as along with 2 people bpb hmk
	VALIDATE: A New Method for the Receptor-Based Prediction of Binding Affinities of Novel Ligands [My Copy] Journal of the American Chemical Society, Vol. 118, No. 16. (1 January 1996), pp. 3959-3969. by Richard D. Head, Mark L. Smythe, Tudor I. Oprea, Chris L. Waller, Stuart M. Green, Garland R. Marshall posted to virtual-screening scoring molecular-design method by npt11tpn on 2009-09-09 07:34:10 as along with 1 person nickolay
	Fragment-Based Computation of Binding Free Energies by Systematic Sampling. [My Copy] Journal of chemical information and modeling, Vol. 49, No. 8. (17 July 2009), pp. 1901-1913. by Matthew Clark, Siavash Meshkat, George T. Talbot, Paolo Carnevali, Jeffrey S. Wiseman posted to scoring fragments de_novo by ubcg08l on 2009-09-07 09:18:57 as along with 1 person carlosjavierna
	Q: a molecular dynamics program for free energy calculations and empirical valence bond simulations in biomolecular systems. [My Copy] Journal of molecular graphics & modelling, Vol. 16, No. 4-6. (c 1998) by J. Marelius, K. Kolmodin, I. Feierberg, J. Aqvist posted to scoring method by npt11tpn on 2009-09-06 11:43:27 as along with 1 person LamBras
	Receptor-based prediction of binding affinities [My Copy] Perspectives in Drug Discovery and Design, Vol. 9-11, No. 0. (1 January 1998), pp. 35-61. by Tudor I. Oprea, Garland R. Marshall posted to scoring method de-novo-ligand-design by npt11tpn on 2009-09-06 11:35:54 as
	Targeted scoring functions for virtual screening [My Copy] Drug Discovery Today, Vol. 14, No. 11-12. (05 June 2009), pp. 562-569. by Markus H. J. Seifert posted to statistics scoring perspective interaction_analysis docking by JALumley on 2009-09-03 11:03:43 as along with 3 people sschurer Scis0000002 zimbo1
	Grand Canonical Monte Carlo Simulation of Ligand−Protein Binding [My Copy] Journal of Chemical Information and Modeling, Vol. 46, No. 1. (1 January 2006), pp. 231-242. by Matthew Clark, Frank Guarnieri, Igor Shkurko, Jeff Wiseman posted to scoring hotspots fragments docking by ubcg08l on 2009-08-27 08:56:45 as along with 2 people ttjoseph daevans
	Distribution of mutual information from complete and incomplete data [My Copy] Computational Statistics & Data Analysis, Vol. 48, No. 3. (01 March 2005), pp. 633-657. by M. Hutter, M. Zaffalon posted to scoring by lna on 2009-08-12 15:53:33 as
	Automated site preparation in physics-based rescoring of receptor ligand complexes. [My Copy] Proteins, Vol. 77, No. 1. (October 2009), pp. 52-61. by Chaya S. Rapp, Cheryl Schonbrun, Matthew P. Jacobson, Chakrapani Kalyanaraman, Niu Huang posted to structure scoring sbdd protein-ligand pocket binding aug09 by klexa on 2009-08-11 19:38:16 as along with 3 people and 1 group oteri jmccammon RamuAnandakrishnan McCammon
	Identifying native-like protein structures with scoring functions based on all-atom ECEPP force fields, implicit solvent models and structure relaxation [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 77, No. 1. (2009), pp. 38-51. by Yelena A. Arnautova, Yury N. Vorobjev, Jorge A. Vila, Harold A. Scheraga posted to structure scoring protein-structure near-native jcc force-fields aug09 by klexa on 2009-08-11 17:40:54 as
	Comparison of UK and US methods for weighting and scoring the SF-36 summary measures [My Copy] J Public Health, Vol. 21, No. 4. (1 December 1999), pp. 372-376. by C. Jenkinson posted to questionnaire scoring sf36 by gareth on 2009-08-06 14:22:18 as
	A statistical score for assessing the quality of multiple sequence alignments. [My Copy] BMC bioinformatics, Vol. 7 (03 November 2006), 484. by V. Ahola, T. Aittokallio, M. Vihinen, E. Uusipaikka posted to scoring new_paper alignment by nuin on 2009-07-24 20:56:47 as along with 3 people BioNica druvus treangen
	Docking Ligands into Flexible and Solvated Macromolecules. 4. Are Popular Scoring Functions Accurate for this Class of Proteins? [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 6. (22 June 2009), pp. 1568-1580. by Pablo Englebienne, Nicolas Moitessier posted to accuracy bridging chemscore complexes consensus drugscorecsd ehits flexibility function functions glidescore goldscore ligand molecules plp1 pose-prediction protein rankscore scoring water xscore by zimbo1 on 2009-07-23 13:01:57 as along with 1 person reyez
	Evaluating Website Quality Using E-Service Quality Dimensions [My Copy] Human Factors and Ergonomics Society Annual Meeting Proceedings (2008), pp. 1117-1121. by V. Gnaneswaran, P. S. Pujari, R. R. Bishu posted to scoring usability website by lucybuykx on 2009-07-16 17:23:21 as along with 1 person mielniczuk
	AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2009), NA. by Oleg Trott, Arthur J. Olson posted to 2009 autodock autodock-vina docking multithreading scoring by klexa on 2009-06-29 15:28:27 as along with 4 people and 1 group robert A_Coletta_Thesis oteri sobolevnrm Structural Biology Group TorVergata
	Structure-Based Shape Pharmacophore Modeling for the Discovery of Novel Anesthetic Compounds [My Copy] Bioorganic & Medicinal Chemistry (29 May 2009) by Jerry O. Ebalunode, Xialan Dong, Zheng Ouyang, Jie Liang, Roderic G. Eckenhoff, Weifan Zheng posted to pharmacophore scoring by superpyrin on 2009-06-14 08:24:40 as
	Robust optimization of scoring functions for a target class [My Copy] Journal of Computer-Aided Molecular Design by Markus Seifert posted to docking scoring by superpyrin on 2009-05-31 09:36:47 as
	An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state. [My Copy] Protein Sci, Vol. 13, No. 2. (February 2004), pp. 400-411. by C. Zhang, S. Liu, H. Zhou, Y. Zhou posted to based c-alpha function protein_folding protein_protein_binding scoring by apaydin on 2009-05-25 12:34:37 as along with 4 people flbarroso j3xucite mirzazadeh kgutwin
	Comparison of Ligand- and Structure-Based Virtual Screening on the DUD Data Set [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 2. (23 February 2009), pp. 209-231. by Modest von Korff, Joel Freyss, Thomas Sander posted to database docking protein_structure scoring by JALumley on 2009-05-11 11:36:35 as along with 1 person zimbo1
	Docking for fragment inhibitors of AmpC beta-lactamase. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 18. (5 May 2009), pp. 7455-7460. by D. G. Teotico, K. Babaoglu, G. J. Rocklin, R. S. Ferreira, A. M. Giannetti, B. K. Shoichet posted to docking fragments scoring screening virtual by ubcg08l on 2009-05-08 09:28:34 as along with 1 person and 1 group sobolevnrm baker-group
	Customizing scoring functions for docking [My Copy] Journal of Computer-Aided Molecular Design, Vol. 22, No. 5. (May 2008), pp. 269-286. by Tuan Pham, Ajay Jain posted to docking function scoring by csrocha on 2009-04-27 21:51:40 as along with 1 person and 1 group oteri Multiple Instance Learning
	Scoring confidence index: statistical evaluation of ligand binding mode predictions [My Copy] Journal of Computer-Aided Molecular Design by Maria Zavodszky, Andrew Stumpff-Kane, David Lee, Michael Feig posted to binding correlation-based docking energy function landscape orientation protein-ligand score scoring by zimbo1 on 2009-04-15 16:13:56 as
	New scoring schema for finding motifs in DNA Sequences [My Copy] BMC Bioinformatics, Vol. 10 (20 March 2009), 93. by Fatemeh, Bahram Goliaei posted to finding motif scoring by cassj on 2009-04-02 11:49:51 as along with 5 people and 1 group svenrahmann idonaldson maximilianh ElenaGrassi nuin cube_and_beyond
	Principles of docking: An overview of search algorithms and a guide to scoring functions. [My Copy] Proteins, Vol. 47, No. 4. (1 June 2002), pp. 409-443. by Inbal Halperin, Buyong Ma, Haim Wolfson, Ruth Nussinov posted to algorithm docking function overview protein review scoring search by csrocha on 2009-03-30 15:07:50 as along with 25 people and 4 groups rabio ucbcjbm flbarroso oteri timg dgruiz cantupaz apaydin bicko chad_davis yongzhao ttjoseph nickolay ima sangeetha dgront blackbart gane5h mmuecke kazemi bpagano massivemayhem cjeans Evangelia nigham Structural Biology Group TorVergata Bioinformatics TSRI_MGL insilicodrug
	Observational Methods Used to Assess Rat Behavior: General Activity [My Copy] Cold Spring Harbor Protocols, Vol. 2007, No. 18. (1 September 2007), pdb.prot4799. by Carol A. Paul, Barbara Beltz, Joanne Berger-Sweeney posted to behaviour behavioural scoring by minhlam on 2009-03-21 18:06:59 as
	Observational Methods Used to Assess Rat Behavior: Neurological Testing [My Copy] Cold Spring Harbor Protocols, Vol. 2007, No. 18. (1 September 2007), pdb.prot4798. by Carol A. Paul, Barbara Beltz, Joanne Berger-Sweeney posted to behaviour behavioural scoring by minhlam on 2009-03-21 18:06:44 as
	Observational Methods Used to Assess Rat Behavior: General Principles [My Copy] Cold Spring Harbor Protocols, Vol. 2007, No. 18. (1 September 2007), pdb.top18. by Carol A. Paul, Barbara Beltz, Joanne Berger-Sweeney posted to behaviour behavioural scoring by minhlam on 2009-03-21 18:06:06 as
	An Alternative Method for the Evaluation of Docking Performance: RSR vs RMSD [My Copy] J. Chem. Inf. Model. (4 July 2008) by Dilmurat Yusuf, Andrew M. Davis, Gerard J. Kleywegt, Stefan Schmitt posted to docking scoring by ahmetbakan on 2009-02-22 21:36:47 as along with 3 people BragilMassoud reyez mcaruso13
	Forecasting and analyzing insurance companies' ratings [My Copy] International Journal of Forecasting, Vol. 23, No. 3. (July 2007), pp. 513-529. by T. Vangestel, D. Martens, B. Baesens, D. Feremans, J. Huysmans, J. Vanthienen posted to credit qfmrc ratings scoring soton by QFRMC to the group QFRMC_ConsumerCredit on 2009-02-20 11:40:38 as
	Credit Risk Scorecards: Developing and Implementing Intelligent Credit Scoring (Wiley and SAS Business Series) [My Copy] (04 November 2005) by Naeem Siddiqi posted to consumer credit scoring textbook by QFRMC to the group QFRMC_ConsumerCredit on 2009-02-12 13:34:59 as along with 1 person dizzylight
	A comparative study of data mining methods in consumer loans credit scoring management [My Copy] Journal of Systems Science and Systems Engineering, Vol. 15, No. 4. (1 December 2006), pp. 419-435. by Wenbing Xiao, Qian Zhao, Qi Fei posted to cart consumer credit data-mining scoring svm by QFRMC to the group QFRMC_ConsumerCredit on 2009-02-12 13:01:17 as
	Data mining in retail credit [My Copy] Operational Research, Vol. 3, No. 2. (1 May 2003), pp. 99-122. by Georgios Sarantopoulos posted to cart consumer credit data-mining retail scoring by QFRMC to the group QFRMC_ConsumerCredit on 2009-02-12 13:00:49 as
	The use of MSD model in credit scoring [My Copy] Operational Research, Vol. 7, No. 3. (2007), pp. 481-503. by Konstantinos Falangis posted to consumer credit linear-programme scoring by QFRMC to the group QFRMC_ConsumerCredit on 2009-02-12 13:00:17 as
	Consumer Credit Models: Pricing, Profit and Portfolios [My Copy] (29 January 2009) by Lyn C. Thomas posted to basel consumer credit qfrmc scoring textbook by QFRMC on 2009-02-12 12:52:54 as along with 1 group QFRMC_ConsumerCredit
	Expert Opinion, Agency Characteristics, and Agency Preferences [My Copy] Political Analysis, Vol. 16, No. 1. (1 January 2008), pp. 3-20. by Joshua D. Clinton, David E. Lewis posted to analysis scoring techniq by kushairah on 2009-02-02 13:19:17 as along with 3 people sherasme aimi9683 fredrikhw
	Optimization of electrostatic interactions in protein-protein complexes. [My Copy] Biophysical journal, Vol. 93, No. 10. (15 November 2007), pp. 3340-3352. by K. Brock, K. Talley, K. Coley, P. Kundrotas, E. Alexov posted to bindingsite electrostatic interaction scoring by timg on 2009-01-27 15:11:20 as along with 4 people and 1 group flbarroso dfgreen choonpeng sobolevnrm baker-group
	Processing and evaluation of predictions in CASP4. [My Copy] Proteins, Vol. Suppl 5 (2001), pp. 13-21. by A. Zemla, Venclovas, J. Moult, K. Fidelis posted to casp4 evaluation gdt_ts model scoring by saunders on 2009-01-23 12:15:03 as
	Codominant Analysis of Banding Data From a Dominant Marker System by Normal Mixtures [My Copy] Genetics, Vol. 155, No. 3. (1 July 2000), pp. 1459-1468. by Hans-Peter Piepho, Georg Koch posted to aflp codominant scoring by ArtemPankin to the group Khavkin's lab on 2009-01-22 18:47:53 as
	QMEAN: A comprehensive scoring function for model quality assessment. [My Copy] Proteins (11 October 2007) by Pascal Benkert, Silvio C E C. Tosatto, Dietmar Schomburg posted to casp force function mean potentials scoring statistical by larian on 2009-01-16 09:25:08 as along with 4 people cat_hutchinson68 j3xucite sebk cdeane
	Scoring function for automated assessment of protein structure template quality [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 57, No. 4., pp. 702-710. by Yang Zhang, Jeffrey Skolnick posted to alignment function gdt_ts protein scoring tmscore by saunders on 2009-01-15 15:53:55 as along with 8 people and 2 groups pjcite reyez karbak marcius dgront aengisch rabio granujilla BioinfoCIPF SGU-CIPF
	Docking and scoring in virtual screening for drug discovery: methods and applications. [My Copy] Nat Rev Drug Discov, Vol. 3, No. 11. (November 2004), pp. 935-949. by D. B. Kitchen, H. Decornez, J. R. Furr, J. Bajorath posted to docking scoring virtual_screening by LamBras on 2008-12-21 13:02:09 as along with 8 people and 9 groups robert85 BragilMassoud dgruiz beapen anita yongzhao marcius sangeetha Bioinformatics structure-bii TSRI_MGL Atopic_and_Seborrhoeic_Dermatitis Skin_Deep insilicodrug Applied_Bimatics BioinfoCIPF SGU-CIPF
	Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae. [My Copy] Molecular & cellular proteomics : MCP, Vol. 6, No. 3. (2 March 2007), pp. 439-450. by Sean R. Collins, Patrick Kemmeren, Xue-Chu C. Zhao, et al.Jack F. Greenblatt, Forrest Spencer, Frank C. Holstege, Jonathan S. Weissman, Nevan J. Krogan posted to architecture protein-complex scoring by elenaz on 2008-12-05 20:48:03 as along with 9 people and 1 group bicko ajbattle lpfernandes czeller nickluscombe grahamc roys csanford paolomarcatili EBI-regulation
	On the significance of sequence alignments when using multiple scoring matrices. [My Copy] Bioinformatics, Vol. 20, No. 6. (12 April 2004), pp. 881-887. by F. Frommlet, A. Futschik, M. Bogdan posted to alignment evalue matrix pvalue scoring sequence significance by treangen on 2008-11-24 09:52:47 as along with 1 person and 1 group kaspermunch Bioinformatics
	Learning scoring schemes for sequence alignment from partial examples. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 5, No. 4. (c 2008), pp. 546-556. by E. Kim, J. Kececioglu posted to 2008 accuracy alignment parameters parametric scoring sequence by treangen on 2008-11-22 20:47:53 as along with 1 person darian
	Guided Docking Approaches to Structure-Based Design and Screening [My Copy] Current Topics in Medicinal Chemistry, Vol. 4, No. 7. (March 2004), pp. 687-700. by X. Fradera, J. Mestres posted to docking scoring virtual_screening by LamBras on 2008-11-22 16:54:32 as along with 3 people and 3 groups oteri dgruiz sangeetha Structural Biology Group TorVergata Bioinformatics insilicodrug

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credit	75
docking	65
consumer	61
function	25
protein	16
asr	13
svm	13
classification	12
rules	11
alignment	10
behavioural	8
binding	8
prediction	8
structure	8
analysis	7
protein-ligand	7
screening	7
virtual_screening	7
aug09	6
call	6
call_system	6
eduspeak	6
flexibility	6
fragments	6
good	6
health	6
language	6
mortgage	6
pedagogy	6
quotable	6
sri	6
textbook	6
2009	5
algorithm	5
bayesian	5
behaviours	5
chapter3	5
method	5
methods	5
model	5
models	5
risk	5
stress	5
affinity	4
cart	4
data-mining	4
dogs	4
ethogram	4
folding	4
forecasting	4
functions	4
htp	4
multiple	4
neural-networks	4
nmr	4
regression	4
sbdd	4
sequence	4
simulation	4
statistics	4
survival	4
virtual	4
addiction	3
basel	3
behaviour	3
calcium	3
capt	3
consensus	3
ct	3
database	3
dynamic	3
economic	3
ed_crc	3
energy	3
evaluation	3
inference	3
ligand	3
linear-programme	3
pathways	3
ppi	3
pronunciation	3
qfrmc	3
reject	3
reject-inference	3
selection	3
utility	3
validation	3
codominant	2
free_energy	2
generic	2
glide	2
interaction	2
jcc	2
landscape	2
lgd	2
lifestyle	2
market	2
pharmacophore	2
shift	2
trees	2

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