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Recent papers classified by the tag sequence.

	Cataloging Coding Sequence Variations in Human Genome Databases [My Copy] PLoS ONE, Vol. 3, No. 10. (30 October 2008), e3575. by Hong-Hee Won, Hee-Jin Kim, Kyung-A Lee, Jong-Won Kim posted to variation tpgp sequence genome database by n00c on 2009-11-06 18:54:18 as along with 1 person daforerog
	All about Craig: the first 'full' genome sequence [My Copy] Nature, Vol. 449, No. 7158. (05 September 2007), pp. 6-7. by Heidi Ledford posted to venter tpgp sequence individual-human-genome genome by n00c on 2009-11-06 18:47:30 as
	Accurate whole human genome sequencing using reversible terminator chemistry [My Copy] Nature, Vol. 456, No. 7218. (06 November 2008), pp. 53-59. posted to whole sequence genome african by gbenson on 2009-11-06 18:01:04 as along with 26 people and 1 group giovenko n00c clearbluespring xingxu dna austin jessopher daforerog vmsr jfr azazello nuin usagi-kirin Archaeogenetics malcook psique tsherig jbhiatt pengchy reyez jmcq inesdesantiago ojabado caseybrown pkonings djkt SIMR bioinformatics
	Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding [My Copy] Genome Research, Vol. 19, No. 9. (22 September 2009), pp. 1527-1541. by Kevin J. McKernan, Heather E. Peckham, Gina L. Costa, et al.Stephen F. McLaughlin, Yutao Fu, Eric F. Tsung, Christopher R. Clouser, Cisyla Duncan, Jeffrey K. Ichikawa, Clarence C. Lee, Zheng Zhang, Swati S. Ranade, Eileen T. Dimalanta, Fiona C. Hyland, Tanya D. Sokolsky, Lei Zhang, Andrew Sheridan, Haoning Fu, Cynthia L. Hendrickson, Bin Li, Lev Kotler, Jeremy R. Stuart, Joel A. Malek, Jonathan M. Manning, Alena A. Antipova, Damon S. Perez, Michael P. Moore, Kathleen C. Hayashibara, Michael R. Lyons, Robert E. Beaudoin, Brittany E. Coleman, Michael W. Laptewicz, Adam E. Sannicandro, Michael D. Rhodes, Rajesh K. Gottimukkala, Shan Yang, Vineet Bafna, Ali Bashir, Andrew MacBride, Can Alkan, Jeffrey M. Kidd, Evan E. Eichler, Martin G. Reese, Francisco M. De La Vega, Alan P. Blanchard posted to whole sequence genome african by gbenson on 2009-11-06 18:00:01 as along with 16 people adijr chrisamiller heliopais daforerog druvus djkt psique sameersoi APRegier fenghezi jmanning2k xingxu pkonings n00c jandot natstreet
	Genomic location analysis by ChIP-Seq [My Copy] Journal of Cellular Biochemistry, Vol. 107, No. 1. (1 May 2009), pp. 11-18. by Artem Barski, Keji Zhao posted to transcription_factors sequence dna chip-sequence analysis by Vincent_Rouilly on 2009-11-05 16:51:21 as along with 9 people stubrown guhjy hagechouchin443 tonamswish humburg ewilban1 talponer cassj polivares
	Extracting transcription factor targets from ChIP-Seq data [My Copy] Nucl. Acids Res., Vol. 37, No. 17. (1 September 2009), e113. by Geetu Tuteja, Peter White, Jonathan Schug, Klaus H. Kaestner posted to transcription_factors sequence dna chip-sequence analysis by Vincent_Rouilly on 2009-11-05 16:49:52 as along with 13 people and 4 groups mfgreen ewilban1 idonaldson guhjy mkiyer rschulz fenghezi clearbluespring thegoose robeirne inesdesantiago malcook polivares Chinnaiyan Lab SIMR bioinformatics BergmanLab Journal picks
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to transcription_factors sequence dna chip-sequence analysis by Vincent_Rouilly on 2009-11-05 16:47:38 as along with 23 people and 2 groups darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz mcm polivares gdb ghattem yadadi djkt stajich mdperry fpattyn bcondon idonaldson caseybrown kengg SIMR bioinformatics Mycology
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to transcription_factors sequence chip-sequence bayesian analysis by Vincent_Rouilly on 2009-11-05 16:46:45 as along with 11 people and 4 groups tonamswish dswan fenghezi inesdesantiago idonaldson polivares mkiyer druvus stajich humburg rschulz Bioinformatics JLab BergmanLab Mycology
	Genomic Resources of Magnaporthe oryzae (GROMO): A comprehensive and integrated database on rice blast fungus [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 316. by Shalabh Thakur, Sanjay Jha, Subhankar R. Barman, Bharat Chattoo posted to user_interface sequence blast annotation by nlapalu on 2009-10-30 17:04:39 as along with 1 person druvus
	Multiple Sequence Alignment in Phylogenetic Analysis [My Copy] Molecular Phylogenetics and Evolution, Vol. 16, No. 3. (September 2000), pp. 317-330. by A. Phillips posted to sequence alignment by nuin on 2009-10-29 14:10:41 as along with 4 people operon aprasad ziquje stormybriggs
	DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome [My Copy] Nature, Vol. 456, No. 7218. (06 November 2008), pp. 66-72. by Timothy J. Ley, Elaine R. Mardis, Li Ding, et al.Bob Fulton, Michael D. McLellan, Ken Chen, David Dooling, Brian H. Dunford-Shore, Sean McGrath, Matthew Hickenbotham, Lisa Cook, Rachel Abbott, David E. Larson, Dan C. Koboldt, Craig Pohl, Scott Smith, Amy Hawkins, Scott Abbott, Devin Locke, LaDeana W. Hillier, Tracie Miner, Lucinda Fulton, Vincent Magrini, Todd Wylie, Jarret Glasscock, Joshua Conyers, Nathan Sander, Xiaoqi Shi, John R. Osborne, Patrick Minx, David Gordon, Asif Chinwalla, Yu Zhao, Rhonda E. Ries, Jacqueline E. Payton, Peter Westervelt, Michael H. Tomasson, Mark Watson, Jack Baty, Jennifer Ivanovich, Sharon Heath, William D. Shannon, Rakesh Nagarajan, Matthew J. Walter, Daniel C. Link, Timothy A. Graubert, John F. DiPersio, Richard K. Wilson posted to tpgp sequence leukemia individual-human-genome genome aml by n00c on 2009-10-28 22:52:15 as along with 16 people tommcdonagh jonilaserson jessopher frohike jfr vmsr yupu kentsis suteedee lewista reyez caseybrown pkonings rodney davfre djkt
	A highly annotated whole-genome sequence of a Korean individual [My Copy] Nature, Vol. advance online publication, No. 7258. (08 July 2009), pp. 1011-1015. by Jong-Il Kim, Young S. Ju, Hansoo Park, et al.Sheehyun Kim, Seonwook Lee, Jae-Hyuk Yi, Joann Mudge, Neil A. Miller, Dongwan Hong, Callum J. Bell, Hye-Sun Kim, In-Soon Chung, Woo-Chung Lee, Ji-Sun Lee, Seung-Hyun Seo, Ji-Young Yun, Hyun N. Woo, Heewook Lee, Dongwhan Suh, Seungbok Lee, Hyun-Jin Kim, Maryam Yavartanoo, Minhye Kwak, Ying Zheng, Mi K. Lee, Hyunjun Park, Jeong Y. Kim, Omer Gokcumen, Ryan E. Mills, Alexander W. Zaranek, Joseph Thakuria, Xiaodi Wu, Ryan W. Kim, Jim J. Huntley, Shujun Luo, Gary P. Schroth, Thomas D. Wu, HyeRan Kim, Kap-Seok Yang, Woong-Yang Park, Hyungtae Kim, George M. Church, Charles Lee, Stephen F. Kingsmore, Jeong-Sun Seo posted to tpgp sequence individual-human-genome genome by n00c on 2009-10-28 22:49:41 as along with 8 people and 1 group fenghezi nicolesoranzo mtagaya reyez pkonings psique djkt jbhiatt Journal picks
	The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group [My Copy] Genome Research, Vol. 19, No. 9. (24 September 2009), pp. 1622-1629. by Sung-Min Ahn, Tae-Hyung Kim, Sunghoon Lee, et al.Deokhoon Kim, Ho Ghang, Dae-Soo Kim, Byoung-Chul Kim, Sang-Yoon Kim, Woo-Yeon Kim, Chulhong Kim, Daeui Park, Yong S. Lee, Sangsoo Kim, Rohit Reja, Sungwoong Jho, Chang G. Kim, Ji-Young Cha, Kyung-Hee Kim, Bonghee Lee, Jong Bhak, Seong-Jin Kim posted to tpgp sequence individual-human-genome genome by n00c on 2009-10-28 22:46:48 as along with 5 people and 1 group ppgardne djkt fenghezi jessopher daforerog Journal picks
	The diploid genome sequence of an Asian individual [My Copy] Nature, Vol. 456, No. 7218. (06 November 2008), pp. 60-65. by Jun Wang, Wei Wang, Ruiqiang Li, et al.Yingrui Li, Geng Tian, Laurie Goodman, Wei Fan, Junqing Zhang, Jun Li, Juanbin Zhang, Yiran Guo, Binxiao Feng, Heng Li, Yao Lu, Xiaodong Fang, Huiqing Liang, Zhenglin Du, Dong Li, Yiqing Zhao, Yujie Hu, Zhenzhen Yang, Hancheng Zheng, Ines Hellmann, Michael Inouye, John Pool, Xin Yi, Jing Zhao, Jinjie Duan, Yan Zhou, Junjie Qin, Lijia Ma, Guoqing Li, Zhentao Yang, Guojie Zhang, Bin Yang, Chang Yu, Fang Liang, Wenjie Li, Shaochuan Li, Dawei Li, Peixiang Ni, Jue Ruan, Qibin Li, Hongmei Zhu, Dongyuan Liu, Zhike Lu, Ning Li, Guangwu Guo, Jianguo Zhang, Jia Ye, Lin Fang, Qin Hao, Quan Chen, Yu Liang, Yeyang Su, A. San, Cuo Ping, Shuang Yang, Fang Chen, Li Li, Ke Zhou, Hongkun Zheng, Yuanyuan Ren, Ling Yang, Yang Gao, Guohua Yang, Zhuo Li, Xiaoli Feng, Karsten Kristiansen, Gane K. Wong, Rasmus Nielsen, Richard Durbin, Lars Bolund, Xiuqing Zhang, Songgang Li, Huanming Yang, Jian Wang posted to tpgp sequence individual-human-genome genome asian by n00c on 2009-10-28 20:16:15 as along with 14 people fenghezi jonilaserson kmdaily daforerog jessopher dakelley vmsr psique GustavoLacerda reyez guhjy caseybrown pkonings djkt
	The Diploid Genome Sequence of an Individual Human [My Copy] PLoS Biol, Vol. 5, No. 10. (4 September 2007), e254. by Samuel Levy, Granger Sutton, Pauline C. Ng, et al.Lars Feuk, Aaron L. Halpern, Brian P. Walenz, Nelson Axelrod, Jiaqi Huang, Ewen F. Kirkness, Gennady Denisov, Yuan Lin, Jeffrey R. MacDonald, Andy W. Pang, Mary Shago, Timothy B. Stockwell, Alexia Tsiamouri, Vineet Bafna, Vikas Bansal, Saul A. Kravitz, Dana A. Busam, Karen Y. Beeson, Tina C. McIntosh, Karin A. Remington, Josep F. Abril, John Gill, Jon Borman, Yu-Hui Rogers, Marvin E. Frazier, Stephen W. Scherer, Robert L. Strausberg, J. Craig Venter posted to venter tpgp sequence individual-human-genome genome by n00c on 2009-10-28 20:14:44 as along with 30 people and 1 group jgill pachorip Scis0000002 daforerog jessopher psique dakelley noushin jo_davies frohike adijr Neeperando operon carlblesius bpb balicea skhadar dullhunk djkt jackjackjjj ramensky massivemayhem jasonbobe PredictER lp2 cabbagezs xingxu hpaces maburkitt nhp Bioinformatics
	Complete Genome Sequence of the Ethanol Producer Zymomonas mobilis NCIMB 11163 [My Copy] J. Bacteriol., Vol. 191, No. 22. (15 November 2009), pp. 7140-7141. by Vassili N. Kouvelis, Elizabeth Saunders, Thomas S. Brettin, et al.David Bruce, Chris Detter, Cliff Han, Milton A. Typas, Katherine M. Pappas posted to zymomonas sequence producer mobilis genome fermentation ethanol by Winzer on 2009-10-28 17:43:38 as
	Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae [My Copy] Science, Vol. 293, No. 5529. (20 July 2001), pp. 498-506. by Herve Tettelin, Karen E. Nelson, Ian T. Paulsen, et al.Jonathan A. Eisen, Timothy D. Read, Scott Peterson, John Heidelberg, Robert T. DeBoy, Daniel H. Haft, Robert J. Dodson, A. Scott Durkin, Michelle Gwinn, James F. Kolonay, William C. Nelson, Jeremy D. Peterson, Lowell A. Umayam, Owen White, Steven L. Salzberg, Matthew R. Lewis, Diana Radune, Erik Holtzapple, Hoda Khouri, Alex M. Wolf, Terry R. Utterback, Cheryl L. Hansen, Lisa A. McDonald, Tamara V. Feldblyum, Samuel Angiuoli, Tanja Dickinson, Erin K. Hickey, Ingeborg E. Holt, Brendan J. Loftus, Fan Yang, Hamilton O. Smith, J. Craig Venter, Brian A. Dougherty, Donald A. Morrison, Susan K. Hollingshead, Claire M. Fraser posted to venter tigr strepcoccus sequence sanger jcvi genomics genome by seb1 on 2009-10-23 19:00:23 as along with 1 person foxpowa
	Ancestors 1.0: A Web Server For Ancestral Sequence Reconstruction [My Copy] Bioinformatics (22 October 2009), btp600. by Abdoulaye B. Diallo, Vladimir Makarenkov, Mathieu Blanchette posted to sequence evolution by druvus on 2009-10-23 08:45:45 as
	Non-motor basal ganglia functions: a review and proposal for a model of sensory predictability in auditory language perception. [My Copy] Cortex; a journal devoted to the study of the nervous system and behavior, Vol. 45, No. 8. (September 2009), pp. 982-990. by Sonja A. Kotz, Michael Schwartze, Maren Schmidt-Kassow posted to synchronization speech sma sequence oscillations internal external attractor by joundi99 on 2009-10-22 15:22:19 as
	Genome Sequence of the Probiotic Bacterium Bifidobacterium animalis subsp. lactis AD011triangledown [My Copy] J. Bacteriol., Vol. 191, No. 6. (15 March 2009), 1995. by Jihyun F. Kim, Haeyoung Jeong, Dong S. Yu, et al.Sang-Haeng Choi, Cheol-Goo Hur, Myeong-Soo Park, Sung H. Yoon, Dae-Won Kim, Geun E. Ji, Hong-Seog Park, Tae K. Oh posted to sequence genome announcement by druvus on 2009-10-20 14:08:40 as
	Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements [My Copy] Genome Research, Vol. 14, No. 7. (July 2004), pp. 1394-1403. by Aaron C. E. Darling, Bob Mau, Frederick R. Blattner, Nicole T. Perna posted to synteny software sequence rotation_1 recombination rearrangement open_source java genome evolution browser alignment by rneches on 2009-10-17 05:37:07 as along with 13 people and 2 groups foxpowa APRegier ArtemPankin hpaces Neeperando bcondon semrich operon catmat AaronDarling azazello mariakmejia druvus Khavkin's lab gatech-compgenomics
	CRITICA: coding region identification tool invoking comparative analysis [My Copy] Mol Biol Evol, Vol. 16, No. 4. (1 April 1999), pp. 512-524. by J. H. Badger, G. J. Olsen posted to sequence rotation_1 protein gene dna codon annotations annotation by rneches on 2009-10-17 01:05:15 as along with 2 people yngong0519 wenhan
	Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 289-293. by Erez Lieberman-Aiden, Nynke L. van Berkum, Louise Williams, et al.Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R. Lajoie, Peter J. Sabo, Michael O. Dorschner, Richard Sandstrom, Bradley Bernstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John Stamatoyannopoulos, Leonid A. Mirny, Eric S. Lander, Job Dekker posted to sequence higher_order_dependencies genomes genome_complexity by roys on 2009-10-16 22:35:43 as along with 29 people and 3 groups psique qayub chvlyl TorstenWaldminghaus kintoki Garamonfok inesdesantiago NickFurnham DrRichardBadge rdiaz daveGerrard colinveal frohike nrk891 zwang timflutre afenley kshameer polivares mgatmedsci diamantis flbarroso jdoconnell fenghezi daforerog bpcusack gjuggler gdb gbloeb JLab BergmanLab Journal picks
	Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs [My Copy] Genome Research, Vol. 14, No. 6. (June 2004), pp. 1147-1159. by Bastien Chevreux, Thomas Pfisterer, Bernd Drescher, et al.Albert J. Driesel, Werner E. G. MÃ¼ller, Thomas Wetter, SÃ¡ndor Suhai posted to sequence rotation_1 genome de_novo assembler alignments alignment by rneches on 2009-10-16 01:45:45 as along with 2 people druvus Ayest
	A parameterization of RNA sequence space [My Copy] Complexity, Vol. 4, No. 4. (1999), pp. 61-71. by Erik Schultes, Peter T. Hraber, Thomas H. LaBean posted to space sequence by rnagraph on 2009-10-14 16:25:56 as
	Harnessing gene expression to identify the genetic basis of drug resistance [My Copy] Molecular Systems Biology, Vol. 5 (13 October 2009) by Bo-Juen Chen, Helen C. Causton, Denesy Mancenido, Noel L. Goddard, Ethan O. Perlstein, Dana Pe'er posted to yeast sequence microarray_data genotype drug_response_prediction drug_network by frohike on 2009-10-14 10:08:55 as along with 4 people dswan ashishanand phoenixzxl ptrobajo
	MUSCLE: a multiple sequence alignment method with reduced time and space complexity [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (19 August 2004), 113. by Robert Edgar posted to sequence rotation_1 muscle multiple_sequence_alignment alignment_method alignment algorithm by rneches on 2009-10-14 00:36:23 as along with 29 people and 5 groups gwallau OscarLopez ivanffcc Helenita Joaquin kmma13 khlevy Pal tomjad mgomes hryk BioNica natstreet Md_2007 sebk wallacei knaseanka chrn jwm balajis gbart caporaso sriram_s cdallett sanchezbuelna timflutre gisle urgi Ema LabDros References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp
	Primary structure of alpha-subunit precursor of Torpedo californica acetylcholine receptor deduced from cDNA sequence. [My Copy] Nature, Vol. 299, No. 5886. (28 October 1982), pp. 793-797. by M. Noda, H. Takahashi, T. Tanabe, et al.M. Toyosato, Y. Furutani, T. Hirose, M. Asai, S. Inayama, T. Miyata, S. Numa posted to sequence ach by dimka on 2009-10-12 18:11:49 as
	Using RSAT oligo-analysis and dyad-analysis tools to discover regulatory signals in nucleic sequences [My Copy] Nature Protocols, Vol. 3, No. 10. (18 September 2008), pp. 1589-1603. by Matthieu Defrance, Rekin's Janky, Olivier Sand, Jacques van Helden posted to sequence oligo motif by druvus on 2009-10-12 17:01:27 as along with 2 people and 1 group polivares natstreet BergmanLab
	NeMeSys: a biological resource for narrowing the gap between sequence and function in the human pathogen Neisseria meningitidis [My Copy] Genome Biology, Vol. 10, No. 10. (09 October 2009), R110. by Christophe Rusniok, David Vallenet, Stephanie Floquet, et al.Helen Ewles, Coralie M. Soulama, Daniel Brown, Aurelie Lajus, Carmen Buchrieser, Claudine Medigue, Philippe Glaser, Vladimir Pelicic posted to sequence pathogen genome by druvus on 2009-10-12 10:05:34 as
	Managing Sequence Data [My Copy] Bioinformatics (2008), pp. 3-27. by Ilene K. Mizrachi posted to software sequence by guhjy on 2009-10-11 04:23:49 as along with 1 person Thyske
	A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation [My Copy] Nucl. Acids Res. (28 September 2009), gkp668. by Thomas Geissmann, Clement Chevalier, Marie-Josee Cros, et al.Sandrine Boisset, Pierre Fechter, Celine Noirot, Jacques Schrenzel, Patrice Francois, Francois Vandenesch, Christine Gaspin, Pascale Romby posted to staphylococcus small sequence rnas noncoding motif conserved bioinformatics aureus by Winzer on 2009-10-09 14:56:19 as along with 1 person and 1 group ppgardne Journal picks
	Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2739-2740. by Olivier Sand, Morgane Thomas-Chollier, Jacques van Helden posted to tool sequence retrieve ensembl by idonaldson on 2009-10-09 08:53:57 as along with 4 people druvus inesdesantiago natstreet sebastien_vigneau
	Comparative sequence and structural analyses of G-protein-coupled receptor crystal structures and implications for molecular models. [My Copy] PloS one, Vol. 4, No. 9. (2009) by Catherine L. Worth, Gunnar Kleinau, Gerd Krause posted to structure sequence review modeling gpcr by xdeupi on 2009-10-06 19:24:07 as
	Using sequence similarity networks for visualization of relationships across diverse protein superfamilies. [My Copy] PloS one, Vol. 4, No. 2. (3 February 2009), e4345. by Holly J. Atkinson, John H. Morris, Thomas E. Ferrin, Patricia C. Babbitt posted to theory sequence phylogeny networks by xdeupi on 2009-10-06 18:08:37 as along with 4 people robert85 Keywan druvus oteri
	New vistas in GPCR 3D structure prediction [My Copy] Journal of Molecular Modeling by Anwar Rayan posted to theory sequence_alignment sequence modeling gpcr by xdeupi on 2009-10-06 17:47:03 as along with 1 person arnaucordomi
	Power and sample size for nested analysis of molecular variance [My Copy] Molecular Ecology, Vol. 18, No. 19. (October 2009), pp. 3961-3966. by Benjamin M. Fitzpatrick posted to statistics sequence dna by jsatkosk on 2009-10-05 20:56:29 as
	Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans [My Copy] Nature, Vol. 461, No. 7262. (09 September 2009), pp. 393-398. by Brian J. Haas, Sophien Kamoun, Michael C. Zody, et al.Rays H. Y. Jiang, Robert E. Handsaker, Liliana M. Cano, Manfred Grabherr, Chinnappa D. Kodira, Sylvain Raffaele, Trudy Torto-Alalibo, Tolga O. Bozkurt, Audrey M. V. Ah-Fong, Lucia Alvarado, Vicky L. Anderson, Miles R. Armstrong, Anna Avrova, Laura Baxter, Jim Beynon, Petra C. Boevink, Stephanie R. Bollmann, Jorunn I. B. Bos, Vincent Bulone, Guohong Cai, Cahid Cakir, James C. Carrington, Megan Chawner, Lucio Conti, Stefano Costanzo, Richard Ewan, Noah Fahlgren, Michael A. Fischbach, Johanna Fugelstad, Eleanor M. Gilroy, Sante Gnerre, Pamela J. Green, Laura J. Grenville-Briggs, John Griffith, Niklaus J. Grunwald, Karolyn Horn, Neil R. Horner, Chia-Hui Hu, Edgar Huitema, Dong-Hoon Jeong, Alexandra M. E. Jones, Jonathan D. G. Jones, Richard W. Jones, Elinor K. Karlsson, Sridhara G. Kunjeti, Kurt Lamour, Zhenyu Liu, LiJun Ma, Daniel MacLean, Marcus C. Chibucos, Hayes McDonald, Jessica McWalters, Harold J. G. Meijer, William Morgan, Paul F. Morris, Carol A. Munro, Keith OâNeill, Manuel Ospina-Giraldo, Andres Pinzon, Leighton Pritchard, Bernard Ramsahoye, Qinghu Ren, Silvia Restrepo, Sourav Roy, Ari Sadanandom, Alon Savidor, Sebastian Schornack, David C. Schwartz, Ulrike D. Schumann, Ben Schwessinger, Lauren Seyer, Ted Sharpe, Cristina Silvar, Jing Song, David J. Studholme, Sean Sykes, Marco Thines, Peter J. I. van de Vondervoort, Vipaporn Phuntumart, Stephan Wawra, Rob Weide, Joe Win, Carolyn Young, Shiguo Zhou, William Fry, Blake C. Meyers, Pieter van West, Jean Ristaino, Francine Govers, Paul R. J. Birch, Stephen C. Whisson, Howard S. Judelson, Chad Nusbaum posted to sequence phytophthora_infestans model_organism irish_potato_famine genome by diamantis on 2009-10-03 19:33:37 as along with 10 people and 3 groups stajich kiekyon bcondon ArtemPankin ppgardne jmanning2k dbk tomhebbron danmaclean rschulz Mycology Khavkin's lab Journal picks
	Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models [My Copy] Bioinformatics Research and Development (2007), pp. 292-302. by Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh posted to sequence secondary protein prediction coils coiled by TLVincent on 2009-10-02 11:40:55 as along with 1 person kgutwin
	Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data [My Copy] In Proc. 18th International Conf. on Machine Learning (2001), pp. 282-289. by John Lafferty, Andrew Mccallum, Fernando Pereira posted to sequence models log-linear labeling crf conditional by pprett on 2009-09-30 14:28:43 as along with 26 people and 4 groups kabus ttylenda jkominek krisl mehrbod davidr halacsy unnonouno balajis buescher76 wcohen sids j3xucite knmnyn student_t dwf bundschu johnkork koji_matsuda mkolar markusd vlachmore kohei-h oyen jmackay idornescu oktave-labs generif_paper Statistical Machine Learning WLV-RGCL
	Flow-Based Propagators for the SEQUENCE and Related Global Constraints [My Copy] Principles and Practice of Constraint Programming (2008), pp. 159-174. by Michael Maher, Nina Narodytska, Claude-Guy Quimper, Toby Walsh posted to soft-constraints sequence global-constraints flow-based-algorithms by gkatsi on 2009-09-30 13:17:44 as along with 1 person and 1 group radsz Constraint Programming
	LIBRUS: Combined Machine Learning and Homology Information for Sequence-based Ligand-Binding Residue Prediction [My Copy] Bioinformatics (28 September 2009), btp561. by Chris Kauffman, George Karypis posted to sequence prediction machine-learning ligand homology binding by neils on 2009-09-30 00:52:38 as
	Memory of sequential experience in the hippocampus during slow wave sleep. [My Copy] Neuron, Vol. 36, No. 6. (19 December 2002), pp. 1183-1194. by A. K. Lee, M. A. Wilson posted to sequence replay rats hippocampus ca1 by nelmor on 2009-09-29 10:53:32 as along with 6 people and 1 group davidho Kbenchenane klouie sebwills apeyrache Lyngbya Glimcher_Lab
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted to sequence next-generation-sequencing mapping by nuin on 2009-09-28 17:35:50 as along with 16 people and 4 groups fenghezi behindtherabbit jandot walshtp torfinnnome stubrown dswan polivares orzenil natstreet djkt jmcq n00c heliopais ppgardne druvus Bioinformatics BergmanLab iSEEM Journal picks
	Sequence assembly [My Copy] Computational Biology and Chemistry, Vol. 33, No. 2. (April 2009), pp. 121-136. by K. Scheibye-Alsing, S. Hoffmann, A. Frankel, et al.P. Jensen, P. F. Stadler, Y. Mang, N. Tommerup, M. J. Gilchrist, A. B. Nygård, S. Cirera posted to sequence review assembly by n00c on 2009-09-28 15:41:33 as along with 8 people GustavoLacerda katholt orzenil guhjy natstreet Thaverkamp robsyme druvus
	ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2607-2608. by Martin Morgan, Simon Anders, Michael Lawrence, Patrick Aboyoun, Herve Pages, Robert Gentleman posted to shortread sequence r quality package input high-throughput exploration data bioconductor assessment by dswan on 2009-09-28 09:43:36 as along with 12 people and 1 group jforment fstrozzi rschulz djkt jmeppley torfinnnome walshtp jamesmorris joaocarrico natstreet n00c druvus Bioinformatics Core Service
	Upcoming challenges for multiple sequence alignment methods in the high-throughput era [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2455-2465. by Carsten Kemena, Cedric Notredame posted to sequence review alignment by torfinnnome on 2009-09-28 08:48:28 as along with 10 people and 2 groups fstrozzi manduca djkt rdiaz sjcockell walshtp nuin natstreet druvus ollieredfernwork Journal picks Orengo Group Journal Picks
	Phylogenetic Analysis and Gene Functional Predictions: Phylogenomics in Action [My Copy] Theoretical Population Biology, Vol. 61, No. 4. (01 June 2002), pp. 481-487. by J. Eisen posted to sequence phylogeny phylogenetics methods evolution bioinformatics by pansapiens on 2009-09-28 07:45:57 as
	The Closest BLAST Hit Is Often Not the Nearest Neighbor [My Copy] Journal of Molecular Evolution, Vol. 52, No. 6. (24 June 2001), pp. 540-542. by Liisa B. Koski, G. Brian Golding posted to sequence phylogeny phylogenetics methods evolution blast bioinformatics by pansapiens on 2009-09-28 07:18:35 as along with 6 people and 3 groups ana dayjm mycitation indigoviolet AaronDarling cerca structural_bioinformatics Bioinformatics EisenLab
	Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis. [My Copy] Genome research, Vol. 8, No. 3. (1 March 1998), pp. 163-167. by J. A. Eisen posted to sequence review phylogeny phylogenetics methods evolution bioinformatics by pansapiens on 2009-09-28 07:04:29 as along with 4 people AaronDarling druvus gjuggler sgoetz

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alignment	277
protein	212
genome	164
structure	163
evolution	129
bioinformatics	105
learning	85
dna	82
analysis	81
software	80
multiple	75
motor	69
prediction	65
gene	57
review	54
database	51
motif	50
rna	42
expression	41
phylogeny	40
genomics	38
homology	38
motor-skill-review	36
accuracy	33
algorithm	32
human	31
annotation	29
methods	29
repeats	28
clustering	27
function	27
mapping	27
animals	26
membrane	26
complexity	25
databases	25
length	25
low	25
interaction	24
statistics	24
indel	23
fmri	22
humans	22
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bacteria	21
transcription	21
regulation	20
testing	20
tool	20
array	19
classification	19
comparison	19
data	19
features	19
binding	17
hmm	17
similarity	17
activation	16
bioinformatic	16
biology	16
domain	16
memory	16
method	16
transmembrane	16
genetics	15
markov	15
oligonucleotide	15
acid	14
membrane-insertion	14
mutation	14
proteins	14
repeat	14
search	14
sp-a	14
blast	13
coding	13
comparative	13
conservation	13
genetic	13
helix	13
insertion	13
microarray	13
molecular	13
ppi	13
amino	12
assembly	12
comps	12
conserved	12
gpcr	12
major-proposal	12
pattern	12
pdb	12
spatial	12
uniprot	12
visualization	12
adaptation	11
homopeptide	11
imprinting	11
nucleosome	11
profiling	11

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