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	Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learnt from available microbial genomic resources? [My Copy] BMC Genomics, Vol. 10, No. 1. (2009) by Frederic Boyer, Gwennaele Fichant, Jeremie Berthod, Yves Vandenbrouck, Ina Attree posted to sequence_analysis secretion_system secretion lateral_transfer genome_wide_analysis bacterial_genomes by freesci on 2009-12-14 10:48:21 as along with 2 people bjorns neils
	Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (2009), 37. by Stephen Smith, Jeremy Beaulieu, Michael Donoghue posted to sequence_analysis phylogeny by orzenil on 2009-12-12 14:34:34 as along with 6 people and 2 groups rs Schmidtc djkt stajich skembel druvus iSEEM Mycology
	Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (10 July 2009), e1000432. by Jiang Du, Robert D. Bjornson, Zhengdong D. Zhang, Yong Kong, Michael Snyder, Mark B. Gerstein posted to sequencing sequence_analysis personal_genomics by tharris on 2009-12-01 16:29:31 as along with 7 people n00c operon nuin natstreet rdiaz dakelley guhjy
	Molecular Evolution of Multisubunit RNA Polymerases: Sequence Analysis [My Copy] Journal of Molecular Biology (03 November 2009) by William J. Lane, Seth A. Darst posted to sequence_analysis rna_polymerase beta_subunit by bdessailly on 2009-11-13 10:00:33 as
	Managing and analyzing next-generation sequence data. [My Copy] PLoS computational biology In PLoS Comput Biol, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted to sequence_management sequence_analysis next_generation by tharris on 2009-10-01 17:37:50 as along with 48 people and 4 groups michaelbarton Jporci kevinemamy heliopais jforment jfr burak idoerg Geknitics cthachuk hzoltan chvlyl sameersoi hpaces gdv GeeSharpMinor idonaldson darian daveGerrard Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz dswan reyez kshameer TRHvidsten djkt ppgardne Bioinformatics Core Service BergmanLab Bioinformatics Journal picks
	Equality Machineries Matter: The Impact of Women's Political Pressure on European Social-Care Policies [My Copy] Soc Pol, Vol. 14, No. 4. (1 December 2007), pp. 437-459. by Inge Bleijenbergh, Conny Roggeband posted to work_legislation social_care_policies sequence_analysis qualitative_comparative_analysis prerequisite part_time_work national_policies national_machineries measures european_union equality emergence childcare_provision by emilianionita on 2009-09-22 19:00:37 as
	Identification of Selective Inhibitors of Cancer Stem Cells by High-Throughput Screening [My Copy] Vol. 138, No. 4. (21 August 2009), pp. 645-659. by Piyush B. Gupta, Tamer T. Onder, Guozhi Jiang, et al.Kai Tao, Charlotte Kuperwasser, Robert A. Weinberg, Eric S. Lander posted to stem sequence_analysis cancer_stem_cell cancer by tonamswish on 2009-09-02 22:05:02 as along with 2 people zeshaan ashrafsanju
	Amino acid substitution matrices from protein blocks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 22. (15 November 1992), pp. 10915-10919. by S. Henikoff, J. G. Henikoff posted to sequence_analysis phylogeny evolution blosum bioinfo_structural bioinfo by cmura on 2009-08-22 23:08:42 as along with 15 people VGreiff rshe rpetrenko BioNica maria_hauser alefox j3xucite sebk cen4ik kaarsinogen dgront gurkanbebek Iden-J_GluR cjeans ashwinma
	snRNP Sm proteins share two evolutionarily conserved sequence motifs which are involved in Sm protein-protein interactions. [My Copy] The EMBO journal, Vol. 14, No. 9. (1 May 1995), pp. 2076-2088. by H. Hermann, P. Fabrizio, V. A. Raker, et al.K. Foulaki, H. Hornig, H. Brahms, R. Lührmann posted to snrnp sm sequence_analysis by cmura to the group MuraLab on 2009-08-19 21:56:41 as
	Sequence analysis of twin ATP binding cassette proteins involved in translational control, antibiotic resistance, and ribonuclease L inhibition [My Copy] Biochemical and Biophysical Research Communications, Vol. 315, No. 1. (27 February 2004), pp. 166-173. by Ian D. Kerr posted to abc atp_binding_cassette sequence_analysis by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-07-27 11:50:34 as
	Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences. [My Copy] Journal of molecular biology, Vol. 262, No. 2. (20 September 1996), pp. 129-139. by I. Ioshikhes, A. Bolshoy, K. Derenshteyn, M. Borodovsky, E. N. Trifonov posted to bioinfo histone nucleosome sequence_analysis by tonamswish on 2009-07-21 22:53:32 as
	MaxBench: evaluation of sequence and structure comparison methods. [My Copy] Bioinformatics (Oxford, England), Vol. 18, No. 3. (March 2002), pp. 494-495. by R. Leplae, T. J. Hubbard posted to tjph sequence_analysis by timhubbard on 2009-07-13 08:33:53 as
	Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 11. (26 May 1998), pp. 6073-6078. by S. E. Brenner, C. Chothia, T. J. Hubbard posted to sequence_analysis tjph by timhubbard on 2009-07-13 07:26:47 as along with 1 person cjeans
	Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. [My Copy] Journal of molecular biology, Vol. 284, No. 4. (11 December 1998), pp. 1201-1210. by J. Park, K. Karplus, C. Barrett, et al.R. Hughey, D. Haussler, T. Hubbard, C. Chothia posted to sequence_analysis tjph by timhubbard on 2009-07-12 00:22:34 as along with 2 people bpcusack dgront
	Intermediate sequences increase the detection of homology between sequences. [My Copy] Journal of molecular biology, Vol. 273, No. 1. (17 October 1997), pp. 349-354. by J. Park, S. A. Teichmann, T. Hubbard, C. Chothia posted to sequence_analysis tjph by timhubbard on 2009-07-12 00:21:05 as
	The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold. [My Copy] Cell, Vol. 88, No. 2. (24 January 1997), pp. 235-242. by M. Bycroft, T. J. Hubbard, M. Proctor, S. M. Freund, A. G. Murzin posted to sequence_analysis tjph by timhubbard on 2009-07-12 00:19:43 as
	New horizons in sequence analysis. [My Copy] Current opinion in structural biology, Vol. 7, No. 2. (April 1997), pp. 190-193. by T. J. Hubbard posted to review sequence_analysis tjph by timhubbard on 2009-07-12 00:16:05 as
	Hidden Markov models of biological primary sequence information. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 91, No. 3. (1 February 1994), pp. 1059-1063. by P. Baldi, Y. Chauvin, T. Hunkapiller, M. A. McClure posted to hidden_markov_model sequence_analysis by qluo on 2009-07-09 12:32:44 as
	Comparative Analysis of Vertebrate Dystrophin Loci Indicate Intron Gigantism as a Common Feature [My Copy] Genome Research, Vol. 13, No. 5. (1 May 2003), pp. 764-772. by Uberto Pozzoli, Greg Elgar, Rachele Cagliani, et al.Laura Riva, Giacomo P. Comi, Nereo Bresolin, Alessandra Bardoni, Manuela Sironi posted to comparative_genomics intron_delay sequence_analysis by daveGerrard to the group BergmanLab on 2009-03-27 10:53:07 as
	BLAT--the BLAST-like alignment tool. [My Copy] Genome research, Vol. 12, No. 4. (1 April 2002), pp. 656-664. by W. James Kent posted to bioinformatics genomics hall_of_fame in_silico sequence_analysis by daveGerrard to the group BergmanLab on 2009-03-25 10:36:03 as along with 37 people and 2 groups azazello rshe dchughes rdowell gwallau druvus aprasad maria_hauser n00c sficklin Thaverkamp cpwardell coela daforerog pwais umit mmartin paszkows operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz yoanjacquemin talponer bozdagd gpappas LabDros EisenLab
	A survey of DNA motif finding algorithms. [My Copy] BMC bioinformatics, Vol. 8 Suppl 7, No. Suppl 7. (2007) by Modan K. Das, Ho-Kwok K. Dai posted to bioinformatics conserved_regulatory_element in_silico review sequence_analysis tfbs transcription_factor_binding_site by daveGerrard to the group BergmanLab on 2009-03-24 09:36:48 as along with 18 people and 1 group bsamal Dulce lusk wowalz svenrahmann isimpson coldmeadow druvus Stew emptyhb dquest nklee maximilianh yevishere csdhwang brant xili03 pradiptaray Bioinformatics - CRUK
	What is a hidden Markov model? [My Copy] Nature Biotechnology, Vol. 22, No. 10. (01 October 2004), pp. 1315-1316. by Sean R. Eddy posted to hidden_markov_model hmm sequence_analysis by skumagai on 2009-02-19 22:50:00 as along with 17 people and 1 group n00c darian dfdong orzenil Yanno flips hpaces mjoach svozil gulkur brian aprasad indigoviolet timflutre berthoums mailund dullhunk EisenLab
	Simple Sequence Repeats Provide a Substrate for Phenotypic Variation in the <italic>Neurospora crassa</italic> Circadian Clock [My Copy] PLoS ONE, Vol. 2, No. 8. (2007), e795. by Todd P. Michael, Sohyun Park, Tae-Sung Kim, et al.Jim Booth, Amanda Byer, Qi Sun, Joanne Chory, Kwangwon Lee posted to neurospora phenotypic repeats sequence_analysis ssr variation by stajich to the group Mycology on 2009-02-19 22:38:03 as
	Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 39. (30 September 2008), pp. 14802-14807. by Charles H. Opperman, David M. Bird, Valerie M. Williamson, et al.Dan S. Rokhsar, Mark Burke, Jonathan Cohn, John Cromer, Steve Diener, Jim Gajan, Steve Graham, T. D. Houfek, Qingli Liu, Therese Mitros, Jennifer Schaff, Reenah Schaffer, Elizabeth Scholl, Bryon R. Sosinski, Varghese P. Thomas, Eric Windham posted to annotation genome nematode plantpathogen sequence_analysis sequencing by stajich to the group Mycology on 2008-09-24 22:50:05 as along with 2 people and 1 group tharris orzenil C. elegans / WormBase
	Accelerated evolutionary rates in tropical and oceanic parmelioid lichens (Ascomycota) [My Copy] BMC Evolutionary Biology, Vol. 8 (22 September 2008), 257. by Thorsten H. Lumbsch, Andrew L. Hipp, Pradeep K. Divakar, Oscar Blanco, Ana Crespo posted to ascomycota fungi lichen molecular_evolution phylogenetics sequence_analysis by stajich to the group Mycology on 2008-09-23 19:10:00 as
	Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs [My Copy] BMC Evolutionary Biology, Vol. 8 (22 September 2008), 255. by Julien Dutheil, Bastien Boussau posted to bioinformatics library sequence_analysis software by stajich to the group Mycology on 2008-09-23 19:09:15 as along with 2 people lptolik druvus
	Short-range order in two eukaryotic genomes: relation to chromosome structure. [My Copy] Journal of Molecular Biology, Vol. 259 (1996), pp. 579-588. by J. Widom posted to article base_composition c_elegans caenorhabditis_elegans caenorhabditis_elegans_genetics celegans chromosomes_bacterial_chemistry chromosomes_bacterial_genetics chromosomes_chemistry chromosomes_fungal_chemistry chromosomes_fungal_genetics chromosomes_genetics elegans fourier_analysis genome genome_bacterial genome_fungal haemophilus_influenzae_genetics nematode oligodeoxyribonucleotides_genetics saccharomyces_cerevisiae_genetics sequence_analysis wormbase by tharris to the group C. elegans / WormBase on 2008-09-18 22:13:56 as along with 1 person thegoose2
	The Repeat Pattern Toolkit (RPT): Analyzing the structure and evolution of the C. elegans genome. [My Copy] ISMB, Vol. 2 (1994), pp. 1-9. by P. Agarwal, D. J. States posted to article c_elegans caenorhabditis_elegans caenorhabditis_elegans_genetics celegans elegans evolution genome models_theoretical nematode repetitive_sequences_nucleic_acid_genetics sequence_analysis wormbase by tharris to the group C. elegans / WormBase on 2008-09-17 01:22:45 as along with 1 person thegoose2
	Molecular evidence that the direct involvement of a protein kinase C in developmental and behavioural susceptibility to tumour-promoting phorbol esters in Caenorhabditis elegans. [My Copy] Biochemical Journal, Vol. 312 (1995), pp. 69-74. by Y. Tabuse, T. Sano, K. Nishiwaki, J. Miwa posted to amino_acid_sequence animals_transgenic article b05451 base_sequence c_elegans caenorhabditis_elegans caenorhabditis_elegans_drug_effects caenorhabditis_elegans_enzymology caenorhabditis_elegans_genetics carcinogens_pharmacology celegans dna_insertion_elements elegans genes_helminth immunoblotting isoenzymes_metabolism molecular_sequence_data mutation_genetics nematode phenotype protein_kinase_c_chemistry protein_kinase_c_genetics protein_kinase_c_metabolism protein_tyrosine_kinase_chemistry protein_tyrosine_kinase_genetics protein_tyrosine_kinase_metabolism recombinant_fusion_proteins sequence_analysis tetradecanoylphorbol_acetate_pharmacology tpa-1 transformation_genetic unc-13 wormbase zk5242 by tharris to the group C. elegans / WormBase on 2008-09-17 01:00:04 as along with 1 person thegoose2
	The Global Landscape of Sequence Diversity [My Copy] Genome Biology, Vol. 8 (08 November 2007), R238. by Jose M. Peregrin-Alvarez, John Parkinson posted to bioinformatics homology sequence_analysis by skhadar on 2008-02-27 07:02:13 as along with 5 people shung gpalidwor cjeans hpaces ale
	An efficient algorithm for large-scale detection of protein families [My Copy] Nucl. Acids Res., Vol. 30, No. 7. (1 April 2002), pp. 1575-1584. by A. J. Enright, S. Van Dongen, C. A. Ouzounis posted to algorithm analysis bioinformatics protein_family sequence_analysis by skhadar on 2008-02-27 07:01:20 as along with 22 people and 2 groups jperkins calderonv nedwards dakelley druvus treangen carlk cgaugain johanviklund chad_davis camster operon knaseanka indigoviolet nirfriedman dgront entropy gcalda GustavoLacerda hpaces RebeccaHamer Borelli dbk-lab EisenLab
	Predicting protein function from sequence and structure [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 12. (01 December 2007), pp. 995-1005. by David Lee, Oliver Redfern, Christine Orengo posted to bioinformatics sequence_analysis structure_analysis by skhadar on 2008-02-27 06:59:48 as along with 14 people and 1 group dbikard operon michaelbarton smpraveena MarcoAlvarez neils cjeans zwang Evangelia hpaces Ema renatomilani kluck janasont MuraLab
	Detecting coevolution in and among protein domains. [My Copy] PLoS computational biology, Vol. 3, No. 11. (1 November 2007), e211. by Chen-Hsiang H. Yeang, David Haussler posted to bioinformatics phyloinformatics sequence_analysis by skhadar on 2008-02-27 06:58:55 as along with 13 people and 1 group dfdong martainn balicea zwang sobolevnrm niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray baker-group
	Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure [My Copy] Bioinformatics, Vol. 23, No. 23. (17 October 2007), pp. 3147-3154. by Jiangning Song, Zheng Yuan, Hao Tan, Thomas Huber, Kevin Burrage posted to disulphide_connections sequence_analysis by rabio on 2007-12-05 13:06:18 as along with 1 person cjeans
	Distinguishing protein-coding and noncoding genes in the human genome [My Copy] Proceedings of the National Academy of Sciences In Proceedings of the National Academy of Sciences, Vol. 104, No. 49. (4 December 2007), pp. 19428-19433. by Michele Clamp, Ben Fry, Mike Kamal, et al.Xiaohui Xie, James Cuff, Michael F. Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S. Lander posted to genome genomic sequence_analysis by cabbagezs on 2007-11-27 07:49:58 as along with 18 people and 3 groups bpcusack antonkratz jo_davies tmmurali rvosa balicea sebastien_vigneau giovanni neils stajich cjeans maximilianh oelemento gjuggler slroberd renatomilani gracio Ema EisenLab FAB-lab Mycology
	Computational Analysis of Mouse piRNA Sequence and Biogenesis [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e222. by Doron Betel, Robert Sheridan, Debora S. Marks, Chris Sander posted to sequence sequence_analysis pirna by cabbagezs on 2007-11-14 05:47:14 as along with 6 people tonamswish gfliustu cjeans oelemento fpattyn altotor
	Genomic analysis of human microRNA transcripts [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 45. (6 November 2007), pp. 17719-17724. by Harpreet K. Saini, Sam Griffiths-Jones, Anton J. Enright posted to genomic mirna mirna_biogenesis mirna_precursor sequence_analysis by cabbagezs on 2007-11-05 07:52:37 as along with 18 people and 1 group danaiancu tonamswish daforerog druvus heliopais jfr guhjy tmmurali dchughes AbnerCYH ealloza bootsy lp2 maximilianh RedmondSmyth gracio maralena tolot27 microRNA
	Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity [My Copy] Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59. by O. Hallikas, K. Palin, N. Sinjushina, et al.R. Rautiainen, J. Partanen, E. Ukkonen, J. Taipale posted to genomic sequence_analysis transcription_factor by cabbagezs on 2007-11-02 06:53:27 as along with 16 people and 5 groups absterga xingxu cisstem Terkko kaarsinogen tuck brant xwbcn dchughes nickluscombe olympos karfunkel maximilianh heliopais oelemento emptyhb Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling
	Identifying sequence-structure pairs undetected by sequence alignments [My Copy] Protein Engineering, Vol. 13, No. 7. (1 July 2000), pp. 459-475. by Sanzo Miyazawa, Robert L. Jernigan posted to sequence_analysis structure_similarity structure_prediction by rabio on 2007-10-04 13:24:21 as along with 1 person krapnik
	Identification of DNA Motifs Implicated in Maintenance of Bacterial Core Genomes by Predictive Modeling [My Copy] PLoS Genetics, Vol. 3, No. 9. (1 September 2007), e153. by David Halpern, Hélène Chiapello, Sophie Schbath, et al.Stéphane Robin, Christelle Hennequet-Antier, Alexandra Gruss, El posted to genomic motif sequence_analysis by cabbagezs on 2007-09-21 11:42:43 as along with 2 people Retchless Ema
	Comparison of C. elegans and C. briggsae Genome Sequences Reveals Extensive Conservation of Chromosome Organization and Synteny [My Copy] PLoS Biology, Vol. 5, No. 7. (1 July 2007), e167. by Ladeana W. Hillier, Raymond D. Miller, Scott E. Baird, et al.Asif Chinwalla, Lucinda A. Fulton, Daniel C. Koboldt, Robert H. Waterston posted to genomic sequence_analysis by cabbagezs on 2007-07-08 13:29:29 as along with 5 people and 1 group thegoose2 tharris asddd tjmorgan semrich C. elegans / WormBase
	False occurrences of functional motifs in protein sequences highlight evolutionary constraints [My Copy] BMC Bioinformatics, Vol. 8 (01 March 2007), 68. by Allegra Via, Pier F. Gherardini, Enrico Ferraro, Gabriele Ausiello, Gianpaolo S. Tomba, Manuela H. Citterich posted to motifs sequence_analysis by rabio on 2007-03-06 09:26:14 as along with 1 person zwang
	Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids [My Copy] (01 July 1999) by Richard Durbin, Sean R. Eddy, Anders Krogh, Graeme Mitchison posted to hmm profile sequence_alignment sequence_analysis sequence_profile sequence_similarity substitution_matrices by rabio on 2007-02-23 14:51:30 as along with 15 people and 1 group adijr esyoun heliopais bicko derek_farn stanley ujh pcahan1 balajis indigoviolet moborg emranmohdtamil dullhunk wenhan xiaobeizhao EisenLab
	An analytic study of the phase transition line in local sequence alignment with gaps [My Copy] Discrete Applied Mathematics, Vol. 104, No. 1-3. (15 August 2000), pp. 113-142. by R. Bundschuh, T. Hwa posted to phase_transition sequence_analysis by rabio on 2007-02-16 16:49:34 as
	A Phase Transition for the Score in Matching Random Sequences Allowing Deletions [My Copy] The Annals of Applied Probability, Vol. 4, No. 1. (1994), pp. 200-225. by Richard Arratia, Michael S. Waterman posted to phase_transition sequence_analysis by rabio on 2007-02-16 16:42:58 as
	Statistical Significance of Probabilistic Sequence Alignment and Related Local Hidden Markov Models [My Copy] Journal of Computational Biology, Vol. 8, No. 3. (2001), pp. 249-282. by Yi K. Yu, Terence Hwa posted to alignment_quality hmm probabilistic_alignment sequence_alignment sequence_analysis by rabio on 2007-02-14 22:51:45 as
	Identification of protein sequence homology by consensus template alignment [My Copy] Journal of Molecular Biology, Vol. 188, No. 2. (20 March 1986), pp. 233-258. by W. R. Taylor posted to template sequence_analysis homology_modeling by rabio on 2007-02-02 17:29:36 as
	Sequence comparison and protein structure prediction [My Copy] Current Opinion in Structural Biology, Vol. 16, No. 3. (June 2006), pp. 374-384. by Roland L. Dunbrack posted to sequence_analysis review structure_prediction by rabio on 2007-02-02 17:27:08 as along with 6 people flbarroso agustinarce wouterboomsma xiaobeizhao schuylrp jwm
	Improving the sensitivity of the sequence profile method [My Copy] Protein Science : a Publication of the Protein Society, Vol. 3, No. 1. (1 January 1994), pp. 139-146. by R. Luthy, I. Xenarios, P. Bucher posted to sequence_profile sequence_analysis by rabio on 2007-02-01 17:07:58 as
	ISIS: interaction sites identified from sequence [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. e13-16. by Y. Ofran, B. Rost posted to sequence_analysis interaction_sites by rabio on 2007-01-29 18:09:59 as along with 1 person cjeans

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