Tag sequencing [at least 200 articles] Export

Recent papers classified by the tag sequencing.

	What would you do if you could sequence everything? [My Copy] Nature Biotechnology, Vol. 26, No. 10. (01 October 2008), pp. 1125-1133. by Avak Kahvejian, John Quackenbush, John F. Thompson posted to sequencing by n00c on 2009-11-24 22:59:29 as along with 19 people hzoltan seb1 inesdesantiago heliopais stubrown installe Annab jfr Borelli jbhiatt Pascalichouchou bertelsen frohike natstreet druvus reyez alexknight psique GeeSharpMinor
	Cheap third-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 4., pp. 244-244. by Nicole Rusk posted to sequencing 3rd-generation by n00c on 2009-11-24 22:59:10 as along with 4 people hzoltan coela cassj dswan
	Initial sequencing and analysis of the human genome [My Copy] Nature, Vol. 409, No. 6822. (15 February 2001), pp. 860-921. posted to sequencing genome by n00c on 2009-11-24 22:47:03 as along with 38 people and 3 groups rshe timflutre bicko jmanning2k kentz humburg vplagnol mqbphcw3 ThomasDOtto psique timhubbard jo_davies daforerog taroleo micromassive wimufi sgoetz fisherp reyez bozdagd cthachuk Cortel dragonrez jnemecek gg Dax42 aprasad yas balajis xdeupi dullhunk dgront djkt olympos nagendraproj incovoma yoanjacquemin brant Proteinkinases T_lab LabCompMed
	A geometric approach for classification and comparison of structural variants. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i222-230. by Suzanne Sindi, Elena Helman, Ali Bashir, Benjamin J. Raphael posted to structural-variants sequencing genome algorithm by jessopher on 2009-11-24 22:23:59 as along with 6 people and 1 group rdiaz dakelley operon jonilaserson APRegier AlexBateman Journal picks
	Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R129. by Mehdi Motallebipour, Adam Ameur, Madhu Sudhan Reddy Bysani, et al.Kalicharan Patra, Ola Wallerman, Jonathan Mangion, Melissa Barker, Kevin McKernan, Jan Komorowski, Claes Wadelius posted to sequencing immunoprecipitation high-throughput h3k4me3 foxa1foxa2 forkhead chromatin chip-seq by Stew to the group Bioinformatics - CRUK on 2009-11-24 10:29:17 as
	Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing [My Copy] Brief Bioinform (27 October 2009), bbp046. by David S. Horner, Giulio Pavesi, Tiziana Castrignano, et al.Paolo D. De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole posted to sequencing bioinformatics by operon on 2009-11-24 03:06:52 as along with 4 people wilbur kshameer renatomilani druvus
	Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream [My Copy] Nat Biotech, Vol. 27, No. 7. (July 2009), pp. 627-632. by Nikos C. Kyrpides posted to sequencing review microbial_genomics databases by pmalkus on 2009-11-24 01:04:42 as along with 4 people and 1 group seanyuan sharpton michaelbarton neils BergmanLab
	Quantification of the yeast transcriptome by single-molecule sequencing [My Copy] Nat Biotech, Vol. 27, No. 7. (July 2009), pp. 652-658. by Doron Lipson, Tal Raz, Alix Kieu, et al.Daniel R. Jones, Eldar Giladi, Edward Thayer, John F. Thompson, Stan Letovsky, Patrice Milos, Marie Causey posted to yeast transcriptomics sequencing by pmalkus on 2009-11-24 00:44:55 as along with 9 people venancio roys psique xingxu guhjy scjparker shikin fenghezi neils
	Searching for SNPs with cloud computing [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R134. by Ben Langmead, Michael Schatz, Jimmy Lin, Mihai Pop, Steven Salzberg posted to snp sequencing cloud by druvus on 2009-11-23 12:57:17 as along with 8 people owenlancaster natstreet Julien_Fayolle kshameer jamesmorris jandot neils n00c
	Genome sequencing in microfabricated high-density picolitre reactors [My Copy] Nature, Vol. 437, No. 7057. (31 July 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. I. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. McDade, Michael P. McKenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted to sequencing pyrosequencing 454 by n00c on 2009-11-23 09:37:05 as along with 38 people and 5 groups rshe seb1 pachorip katiehumphry jonilaserson michaelbarton sandfire natstreet daforerog idoerg mmartin azazello jbhiatt alessandrobrozzi leechuck bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon tpreeprem farhat carpi bpb mcox GustavoLacerda jlgreen kieran101 Microbial-Ecology GIG gatech-compgenomics Green Lab iSEEM
	Massively Parallel Sequencing: The Next Big Thing in Genetic Medicine [My Copy] Vol. 85, No. 2. (14 August 2009), pp. 142-154. by Tracy Tucker, Marco Marra, Jan M. Friedman posted to solexa sequencing sanger review 454 by chriscole on 2009-11-22 10:39:20 as along with 1 person daforerog
	Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays. [My Copy] Science (New York, N.Y.) (5 November 2009), 1181498. by Radoje Drmanac, Andrew B. Sparks, Matthew J. Callow, et al.Aaron L. Halpern, Norman L. Burns, Bahram G. Kermani, Paolo Carnevali, Igor Nazarenko, Geoffrey B. Nilsen, George Yeung, Fredrik Dahl, Andres Fernandez, Bryan Staker, Krishna P. Pant, Jonathan Baccash, Adam P. Borcherding, Anushka Brownley, Ryan Cedeno, Linsu Chen, Dan Chernikoff, Alex Cheung, Razvan Chirita, Benjamin Curson, Jessica C. Ebert, Coleen R. Hacker, Robert Hartlage, Brian Hauser, Steve Huang, Yuan Jiang, Vitali Karpinchyk, Mark Koenig, Calvin Kong, Tom Landers, Catherine Le, Jia Liu, Celeste E. McBride, Matt Morenzoni, Robert E. Morey, Karl Mutch, Helena Perazich, Kimberly Perry, Brock A. Peters, Joe Peterson, Charit L. Pethiyagoda, Kaliprasad Pothuraju, Claudia Richter, Abraham M. Rosenbaum, Shaunak Roy, Jay Shafto, Uladzislau Sharanhovich, Karen W. Shannon, Conrad G. Sheppy, Michel Sun, Joseph V. Thakuria, Anne Tran, Dylan Vu, Alexander Wait W. Zaranek, Xiaodi Wu, Snezana Drmanac, Arnold R. Oliphant, William C. Banyai, Bruce Martin, Dennis G. Ballinger, George M. Church, Clifford A. Reid posted to sequencing by JonD on 2009-11-21 03:23:11 as along with 13 people and 1 group dakelley qayub sandfire daforerog Peiyong chvlyl JamesBarger natstreet heliopais rwst orzenil zufar frohike Journal picks
	The ontology of biological sequences [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (18 November 2009), 377. by Robert Hoehndorf, Janet Kelso, Heinrich Herre posted to sequencing ontology bioinformatics by operon on 2009-11-20 22:32:03 as along with 7 people and 1 group druvus guhjy mjbell allysonlister kshameer barriot dullhunk Journal picks
	A large genome center's improvements to the Illumina sequencing system [My Copy] Nature Methods, Vol. 5, No. 12. (25 November 2008), pp. 1005-1010. by Michael A. Quail, Iwanka Kozarewa, Frances Smith, et al.Aylwyn Scally, Philip J. Stephens, Richard Durbin, Harold Swerdlow, Daniel J. Turner posted to sequencing by seb1 on 2009-11-20 20:53:57 as along with 13 people and 1 group Annab polivares katholt hagechouchin443 sandfire natstreet druvus jfr vmsr azazello clearbluespring jbhiatt caseybrown JLab
	Genome evolution and adaptation in a long-term experiment with Escherichia coli. [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1243-1247. by Jeffrey E. Barrick, Dong Su S. Yu, Sung Ho H. Yoon, et al.Haeyoung Jeong, Tae Kwang K. Oh, Dominique Schneider, Richard E. Lenski, Jihyun F. Kim posted to sequencing mutation evolution by pmalkus on 2009-11-20 20:18:47 as along with 31 people and 5 groups dokky samubernard ilyashl biomcgary kintoki zwang jasontsai aaltenburger sawasthi nurban josepe tjandra venancio maren qayub Garamonfok yyfwuhan Asclepius dbikard nzm jjray djkt treangen lp2 codonusage operon diamantis michaelbarton druvus DrRichardBadge richardfranzese ronbun_2009au Pedro Martinez EvoDevo lab Barcelona iSEEM Journal picks BergmanLab
	Next-generation genome [My Copy] Nature Methods, Vol. 5, No. 12. (01 December 2008), pp. 989-989. posted to sequencing by seb1 on 2009-11-20 18:40:58 as
	Computational methods for discovering structural variation with next-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S13-S20. by Paul Medvedev, Monica Stanciu, Michael Brudno posted to sequencing by seb1 on 2009-11-20 18:35:24 as along with 17 people and 2 groups pst owenlancaster robertrentzsch oannes74 toszko kiekyon michaelbarton jasontsai sameersoi heliopais druvus GeeSharpMinor Peiyong n00c gdv desany qayub Orengo Group Journal Picks Journal picks
	The potential and challenges of nanopore sequencing [My Copy] Nature Biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1146-1153. by Daniel Branton, David W. Deamer, Andre Marziali, et al.Hagan Bayley, Steven A. Benner, Thomas Butler, Massimiliano Di Ventra, Slaven Garaj, Andrew Hibbs, Xiaohua Huang, Stevan B. Jovanovich, Predrag S. Krstic, Stuart Lindsay, Xinsheng S. Ling, Carlos H. Mastrangelo, Amit Meller, John S. Oliver, Yuriy V. Pershin, J. Michael Ramsey, Robert Riehn, Gautam V. Soni, Vincent Tabard-Cossa, Meni Wanunu, Matthew Wiggin, Jeffery A. Schloss posted to sequencing nature-biotech nanopore-sequencing by seb1 on 2009-11-20 18:10:32 as along with 10 people chvlyl inesdesantiago heliopais guhjy idoerg jbhiatt sharpstones alexknight reyez GeeSharpMinor
	Democratizing sequencing [My Copy] Nature Methods, Vol. 2, No. 9. (September 2005), pp. 633-633. posted to sequencing by seb1 on 2009-11-20 18:04:57 as
	De novo sequencing of plant genomes using second-generation technologies [My Copy] Brief Bioinform, Vol. 10, No. 6. (1 November 2009), pp. 609-618. by Michael Imelfort, David Edwards posted to tools sequencing plant_genomes plant_genome_research illumina high-throughput genomics genome_sequence dna_sequencing bioinformatics assembly_tools by davidmam on 2009-11-20 15:48:32 as along with 2 people Jporci TRHvidsten
	The challenges of sequencing by synthesis [My Copy] Nature Biotechnology, Vol. 27, No. 11. (06 November 2009), pp. 1013-1023. by Carl W. Fuller, Lyle R. Middendorf, Steven A. Benner, et al.George M. Church, Timothy Harris, Xiaohua Huang, Stevan B. Jovanovich, John R. Nelson, Jeffery A. Schloss, David C. Schwartz, Dmitri V. Vezenov posted to sequencing dna_sequencing_by_synthesis_sbs by viren4388 on 2009-11-19 21:50:10 as along with 5 people heliopais JonD brianb chvlyl seb1
	Epigenomics: Methylation matters [My Copy] Nature, Vol. 462, No. 7271. (18 November 2009), pp. 296-297. by Dirk Schubeler posted to tissue_specific stem_cell sequencing methylome methylation fibroblast epigenomics epigenetics by frohike on 2009-11-19 09:14:29 as along with 1 person clduarte
	The effect of sequencing errors on metagenomic gene prediction. [My Copy] BMC genomics, Vol. 10, No. 1. (12 November 2009), 520. by Katharina J. Hoff posted to sequencing metagenomics gene_prediction by skembel to the group iSEEM on 2009-11-18 21:40:20 as along with 2 people and 1 group jsatkosk ppgardne Journal picks
	Exome sequencing identifies the cause of a mendelian disorder [My Copy] Nature Genetics, Vol. advance online publication (13 November 2009) by Sarah B. Ng, Kati J. Buckingham, Choli Lee, et al.Abigail W. Bigham, Holly K. Tabor, Karin M. Dent, Chad D. Huff, Paul T. Shannon, Ethylin W. Jabs, Deborah A. Nickerson, Jay Shendure, Michael J. Bamshad posted to sequencing postdoc miller_syndrome genetic exome by cajunsushi on 2009-11-18 19:59:36 as along with 5 people pst seb1 daforerog Peiyong psique
	Editorial [My Copy] Bioinformatics, Vol. 25, No. 4. (06 January 2009), pp. 429-429. by A. Bateman, J. Quackenbush posted to sequencing quakenbush editorial by seb1 on 2009-11-18 16:14:10 as along with 8 people n00c dolchan svenrahmann idoerg orzenil druvus floatingpoint djkt
	Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species [My Copy] J Hered, Vol. 100, No. 6. (1 November 2009), pp. 659-674. by Genome 10K Community of Scientists posted to sequencing haussler genome-10k by seb1 on 2009-11-18 15:08:30 as along with 3 people coela kiekyon aprasad
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nat Meth, Vol. 6, No. 11s. (15 November 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to sequencing assembly alignment by owenlancaster on 2009-11-18 11:26:43 as along with 13 people and 1 group pst robertrentzsch oannes74 Thaverkamp jasontsai natstreet seb1 druvus chvlyl GeeSharpMinor n00c venancio desany Orengo Group Journal Picks
	Computation for ChIP-seq and RNA-seq studies. [My Copy] Nature methods, Vol. 6, No. 11 Suppl. (15 November 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to sequencing bioinformatics algorithm by timflutre on 2009-11-17 20:53:33 as along with 23 people and 2 groups urgi Jporci pst epigenetics molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	Identifiability of isoform deconvolution from junction arrays and RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3056-3059. by David Hiller, Hui Jiang, Weihong Xu, Wing H. Wong posted to splicing sequencing expression arrays by djkt on 2009-11-17 17:36:03 as along with 5 people and 2 groups jwfoley hzoltan cajunsushi ghattem GeeSharpMinor Journal picks SIMR bioinformatics
	Next-generation gap [My Copy] Nat Meth, Vol. 6, No. 11s. (15 November 2009), pp. S2-S5. by John D. McPherson posted to sequencing comment by torfinnnome on 2009-11-17 15:08:25 as along with 8 people pst owenlancaster Vincent_Rouilly seb1 idoerg oannes74 heliopais GeeSharpMinor
	Characterizing natural variation using next-generation sequencing technologies [My Copy] Trends in Genetics, Vol. 25, No. 10. (02 October 2009), pp. 463-471. by Yoav Gilad, Jonathan K. Pritchard, Kevin Thornton posted to sequencing population_genetics evolution bioinformatics by operon on 2009-11-16 18:51:17 as along with 5 people and 1 group jwfoley skembel djkt n00c natstreet iSEEM
	MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions [My Copy] Nat Meth, Vol. 6, No. 7. (31 May 2009), pp. 473-474. by Seunghak Lee, Fereydoun Hormozdiari, Can Alkan, Michael Brudno posted to variation software sequencing indels by ongenetics on 2009-11-16 13:22:41 as along with 3 people and 1 group druvus fpattyn dakelley Neuroblastoma
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to variation software sequencing human genetic_architecture cnv by ongenetics on 2009-11-16 13:17:28 as along with 30 people and 1 group chvlyl leemachado daed gbenson n00c bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant torfinnnome jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation [My Copy] Nature Genetics, Vol. 41, No. 5. (19 April 2009), pp. 535-543. by Patrick S. Tarpey, Raffaella Smith, Erin Pleasance, et al.Annabel Whibley, Sarah Edkins, Claire Hardy, Sarah O'Meara, Calli Latimer, Ed Dicks, Andrew Menzies, Phil Stephens, Matt Blow, Chris Greenman, Yali Xue, Chris Tyler-Smith, Deborah Thompson, Kristian Gray, Jenny Andrews, Syd Barthorpe, Gemma Buck, Jennifer Cole, Rebecca Dunmore, David Jones, Mark Maddison, Tatiana Mironenko, Rachel Turner, Kelly Turrell, Jennifer Varian, Sofie West, Sara Widaa, Paul Wray, Jon Teague, Adam Butler, Andrew Jenkinson, Mingming Jia, David Richardson, Rebecca Shepherd, Richard Wooster, M. Isabel Tejada, Francisco Martinez, Gemma Carvill, Rene Goliath, Arjan P. M. de Brouwer, Hans van Bokhoven, Hilde Van Esch, Jamel Chelly, Martine Raynaud, Hans-Hilger Ropers, Fatima E. Abidi, Anand K. Srivastava, James Cox, Ying Luo, Uma Mallya, Jenny Moon, Josef Parnau, Shehla Mohammed, John L. Tolmie, Cheryl Shoubridge, Mark Corbett, Alison Gardner, Eric Haan, Sinitdhorn Rujirabanjerd, Marie Shaw, Lucianne Vandeleur, Tod Fullston, Douglas F. Easton, Jackie Boyle, Michael Partington, Anna Hackett, Michael Field, Cindy Skinner, Roger E. Stevenson, Martin Bobrow, Gillian Turner, Charles E. Schwartz, Jozef Gecz, F. Lucy Raymond, P. Andrew Futreal, Michael R. Stratton posted to sequencing mr by vplagnol on 2009-11-13 11:49:11 as along with 5 people and 2 groups Peiyong avilella jandot fenghezi daforerog Ensembl Compara citations Journal picks
	Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L) [My Copy] Genome Biology, Vol. 10, No. 11. (4 November 2009), R122. by Mingxiong Pang, Andrew Woodward, Vikram Agarwal, et al.Xueying Guan, Misook Ha, Vanitharani Ramachandran, Xuemei Chen, Barbara Triplett, David Stelly, Z. Jeffrey Chen posted to small_interfering_rnas sirna sequencing ngs illumina by davidmam on 2009-11-13 10:15:20 as along with 2 people natstreet samgj
	Genomics: Sequencing costs drop [My Copy] Nature, Vol. 462, No. 7270. (11 November 2009), pp. 141-141. posted to sequencing humgen by AlexBateman to the group Journal picks on 2009-11-13 09:44:07 as
	Managing and analyzing next-generation sequence data. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted to sequencing analyze by chvlyl on 2009-11-13 09:19:44 as along with 41 people and 3 groups Geknitics cthachuk hzoltan sameersoi hpaces gdv GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz michaelbarton dswan reyez kshameer TRHvidsten djkt ppgardne BergmanLab Bioinformatics Journal picks
	How to map billions of short reads onto genomes [My Copy] Nature Biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to tool sequencing review read next_generation bioinfo by tonamswish on 2009-11-12 13:16:00 as along with 28 people and 5 groups cthachuk hzoltan heliopais giovenko jfr torfinnnome daforerog jonilaserson mkiyer Annab darian polivares ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Bioinformatics Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	Single molecule measurement of the "speed limit" of DNA polymerase [My Copy] Proceedings of the National Academy of Sciences (11 November 2009) by Jerrod J. Schwartz, Stephen R. Quake posted to sequencing polymerase by JonD on 2009-11-12 03:12:54 as along with 5 people and 1 group samubernard jjray Fernando_FF alexknight samjlord moernerlab
	Microdroplet-based PCR enrichment for large-scale targeted sequencing. [My Copy] Nature biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1025-1031. by Ryan Tewhey, Jason B. Warner, Masakazu Nakano, et al.Brian Libby, Martina Medkova, Patricia H. David, Steve K. Kotsopoulos, Michael L. Samuels, J. Brian Hutchison, Jonathan W. Larson, Eric J. Topol, Michael P. Weiner, Olivier Harismendy, Jeff Olson, Darren R. Link, Kelly A. Frazer posted to targeted sequencing by chvlyl on 2009-11-12 01:57:26 as along with 2 people and 2 groups torfinnnome qayub Reunions Biblio Spectro-IAB Journal picks
	Whole-genome sequencing and variant discovery in C. elegans. [My Copy] Nature methods, Vol. 5, No. 2. (20 February 2008), pp. 183-188. by LaDeana W. Hillier, Gabor T. Marth, Aaron R. Quinlan, et al.David Dooling, Ginger Fewell, Derek Barnett, Paul Fox, Jarret I. Glasscock, Matthew Hickenbotham, Weichun Huang, Vincent J. Magrini, Ryan J. Richt, Sacha N. Sander, Donald A. Stewart, Michael Stromberg, Eric F. Tsung, Todd Wylie, Tim Schedl, Richard K. Wilson, Elaine R. Mardis posted to sequencing by Annab on 2009-11-11 18:48:53 as along with 14 people seninp n00c APRegier thegoose2 druvus semrich AaronDarling usagi-kirin matthewsuderman inesdesantiago orzenil mdimon farhat tharris
	Advanced sequencing technologies: methods and goals. [My Copy] Nature reviews. Genetics, Vol. 5, No. 5. (May 2004), pp. 335-344. by Jay Shendure, Robi D. Mitra, Chris Varma, George M. Church posted to sequencing by Annab on 2009-11-11 18:47:20 as along with 2 people farhat bozdagd
	BFAST: An Alignment Tool for Large Scale Genome Resequencing [My Copy] PLoS ONE, Vol. 4, No. 11. (11 November 2009), e7767. by Nils Homer, Barry Merriman, Stanley F. Nelson posted to software short-reads sequencing paired-end mapping alignment by torfinnnome on 2009-11-11 12:32:55 as along with 5 people n00c friendpine zwang druvus idonaldson
	Short-Read Sequencing Technologies for Transcriptional Analyses [My Copy] Annual Review of Plant Biology, Vol. 60, No. 1. (9 January 2009), pp. 305-333. by Stacey A. Simon, Jixian Zhai, Raja S. Nandety, et al.Kevin P. McCormick, Jia Zeng, Diego Mejia, Blake C. Meyers posted to sequencing review next-generation-sequencing by darian on 2009-11-11 10:36:40 as along with 6 people giovenko heliopais manduca GeeSharpMinor orzenil abizar
	VarScan: variant detection in massively parallel sequencing of individual and pooled samples [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2283-2285. by Daniel C. Koboldt, Ken Chen, Todd Wylie, et al.David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding posted to snps sequencing applications by darian on 2009-11-11 10:32:38 as along with 15 people and 3 groups hzoltan Peiyong seb1 heliopais mkiyer dakelley djkt PabloMarin guhjy n00c orzenil natstreet druvus stajich malcook Journal picks Mycology SIMR bioinformatics
	Benchmarking Next-Generation Transcriptome Sequencing for Functional and Evolutionary Genomics [My Copy] Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2731-2744. by John G. Gibbons, Eric M. Janson, Chris T. Hittinger, Mark Johnston, Patrick Abbot, Antonis Rokas posted to sequencing assembly by djkt on 2009-11-11 00:09:19 as along with 7 people and 1 group mlog kiekyon biomcgary GustavoLacerda stajich natstreet druvus Mycology
	An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer [My Copy] Nat Biotech, Vol. 27, No. 11. (01 November 2009), pp. 1005-1011. by Xiao-Song Wang, John R. Prensner, Guoan Chen, et al.Qi Cao, Bo Han, Saravana M. Dhanasekaran, Rakesh Ponnala, Xuhong Cao, Sooryanarayana Varambally, Dafydd G. Thomas, Thomas J. Giordano, David G. Beer, Nallasivam Palanisamy, Maureen A. Sartor, Gilbert S. Omenn, Arul M. Chinnaiyan posted to transcriptome sequencing paired-end gene fusion cancer by torfinnnome on 2009-11-09 12:26:59 as along with 3 people and 1 group qayub chvlyl frohike Journal picks
	The breast cancer somatic 'muta-ome': tackling the complexity. [My Copy] Breast cancer research : BCR, Vol. 11, No. 2. (30 March 2009), 301. by Andrew E. Teschendorff, Carlos Caldas posted to sequencing mutations copy-number comment breast_cancer by jfr on 2009-11-08 22:45:12 as
	Identifying protein-coding genes in genomic sequences [My Copy] Genome Biology, Vol. 10, No. 1. (30 January 2009), 201. by Jennifer Harrow, Alinda Nagy, Alexandre Reymond, et al.Tyler Alioto, Laszlo Patthy, Stylianos Antonarakis, Roderic Guigo posted to sequencing review by jfr to the group Bioinformatics on 2009-11-08 22:20:40 as along with 14 people and 1 group antonkratz robfsouza nlapalu renatomilani ArtemPankin hpaces guhjy michaelbarton idoerg jm12 pawelszczesny natstreet barriot druvus Khavkin's lab
	Annotation Confidence Score for Genome Annotation: A Genome Comparison Approach. [My Copy] Bioinformatics (Oxford, England) (24 October 2009), btp613. by Youngik Yang, Donald Gilbert, Sun Kim posted to sequencing genomics annotation by operon on 2009-11-07 20:29:54 as along with 4 people ramonvidal kevinzheng1983 kshameer druvus

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solexa	145
genome	134
illumina	133
genomics	113
454	103
review	99
assembly	85
genome-analyzer	75
method	66
metagenomics	65
bioinformatics	64
human	64
cnv	56
cancer	55
software	54
dna	51
snp	50
rna	49
analyzer	43
algorithm	42
alignment	42
transcriptome	40
expression	37
evolution	36
methods	36
fourstar	35
technology	34
mapping	33
microarray	33
genetics	32
next_generation	29
nextgen	27
variation	27
gene	26
short-read	26
bacteria	25
fivestar	24
solid	24
transcriptomics	24
transcription	23
high	22
next	22
snps	22
chip	21
throughput	21
methylation	20
next-generation	20
resequencing	20
short_read_analysis	20
mirna	19
rna-seq	19
threestar	19
analysis	18
pcr	18
high-throughput	17
splicing	17
yeast	17
chip-seq	16
mutation	16
subassemblypaper	16
generation	15
genotyping	15
nanopore	15
ngs	15
sanger	15
annotation	14
application	14
capture	14
exome	14
microrna	14
polymorphism	14
pyrosequencing	14
statistics	14
chromatin	13
next-gen	13
parallel	13
popgen	13
association	12
gen	12
hiv	12
local-alignment	12
nextgensequencing	12
epigenetics	11
mouse	11
multiplexing	11
rna_seq	11
short	11
amaranthus	10
cpg	10
denovo	10
design	10
detection	10
drosophila	10
geneticspaper	10
model	10
sequence	10
comparative	9
comparison	9
microbial	9
shortread	9

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