Tag sequencing [at least 200 articles] Export

Recent papers classified by the tag sequencing.

	Identifying protein-coding genes in genomic sequences [My Copy] Genome Biology, Vol. 10, No. 1. (30 January 2009), 201. by Jennifer Harrow, Alinda Nagy, Alexandre Reymond, et al.Tyler Alioto, Laszlo Patthy, Stylianos Antonarakis, Roderic Guigo posted to sequencing review by jfr to the group Bioinformatics on 2009-11-08 22:20:40 as along with 14 people and 1 group antonkratz robfsouza nlapalu renatomilani ArtemPankin hpaces guhjy michaelbarton idoerg jm12 pawelszczesny natstreet barriot druvus Khavkin's lab
	The challenges of sequencing by synthesis [My Copy] Nature Biotechnology, Vol. 27, No. 11. (06 November 2009), pp. 1013-1023. by Carl W. Fuller, Lyle R. Middendorf, Steven A. Benner, et al.George M. Church, Timothy Harris, Xiaohua Huang, Stevan B. Jovanovich, John R. Nelson, Jeffery A. Schloss, David C. Schwartz, Dmitri V. Vezenov posted to sequencing by seb1 on 2009-11-07 22:52:48 as
	Annotation Confidence Score for Genome Annotation: A Genome Comparison Approach. [My Copy] Bioinformatics (Oxford, England) (24 October 2009), btp613. by Youngik Yang, Donald Gilbert, Sun Kim posted to sequencing genomics annotation by operon on 2009-11-07 20:29:54 as along with 3 people kevinzheng1983 kshameer druvus
	An Eulerian path approach to DNA fragment assembly. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 17. (14 August 2001), pp. 9748-9753. by P. A. Pevzner, H. Tang, M. S. Waterman posted to sequencing assembly algorithms by aheilbut on 2009-11-07 19:10:27 as along with 14 people and 2 groups jengeldk n00c robsyme Neeperando idoerg dakelley brl A_Olympia briann jmeppley AaronDarling nedwards azazello jwhitney Philosophy_of_Information Blog_and_Wiki_Research
	The potential and challenges of nanopore sequencing [My Copy] Nature Biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1146-1153. by Daniel Branton, David W. Deamer, Andre Marziali, et al.Hagan Bayley, Steven A. Benner, Thomas Butler, Massimiliano Di Ventra, Slaven Garaj, Andrew Hibbs, Xiaohua Huang, Stevan B. Jovanovich, Predrag S. Krstic, Stuart Lindsay, Xinsheng S. Ling, Carlos H. Mastrangelo, Amit Meller, John S. Oliver, Yuriy V. Pershin, J. Michael Ramsey, Robert Riehn, Gautam V. Soni, Vincent Tabard-Cossa, Meni Wanunu, Matthew Wiggin, Jeffery A. Schloss posted to sequencing nanopore by chvlyl on 2009-11-07 06:47:54 as along with 9 people inesdesantiago heliopais guhjy idoerg jbhiatt sharpstones alexknight reyez GeeSharpMinor
	Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays [My Copy] Science (5 November 2009), 1181498. by Radoje Drmanac, Andrew B. Sparks, Matthew J. Callow, et al.Aaron L. Halpern, Norman L. Burns, Bahram G. Kermani, Paolo Carnevali, Igor Nazarenko, Geoffrey B. Nilsen, George Yeung, Fredrik Dahl, Andres Fernandez, Bryan Staker, Krishna P. Pant, Jonathan Baccash, Adam P. Borcherding, Anushka Brownley, Ryan Cedeno, Linsu Chen, Dan Chernikoff, Alex Cheung, Razvan Chirita, Benjamin Curson, Jessica C. Ebert, Coleen R. Hacker, Robert Hartlage, Brian Hauser, Steve Huang, Yuan Jiang, Vitali Karpinchyk, Mark Koenig, Calvin Kong, Tom Landers, Catherine Le, Jia Liu, Celeste E. McBride, Matt Morenzoni, Robert E. Morey, Karl Mutch, Helena Perazich, Kimberly Perry, Brock A. Peters, Joe Peterson, Charit L. Pethiyagoda, Kaliprasad Pothuraju, Claudia Richter, Abraham M. Rosenbaum, Shaunak Roy, Jay Shafto, Uladzislau Sharanhovich, Karen W. Shannon, Conrad G. Sheppy, Michel Sun, Joseph V. Thakuria, Anne Tran, Dylan Vu, Alexander W. Zaranek, Xiaodi Wu, Snezana Drmanac, Arnold R. Oliphant, William C. Banyai, Bruce Martin, Dennis G. Ballinger, George M. Church, Clifford A. Reid posted to sequencing ngs by orzenil on 2009-11-06 23:56:34 as along with 2 people zufar frohike
	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted to variation structure sequencing genome combinatorics algorithm by n00c on 2009-11-06 17:06:53 as along with 16 people rdiaz aezrin jandot GustavoLacerda guhjy jessopher megraw jonilaserson chrisamiller dandaman sameersoi djkt dakelley APRegier natstreet druvus
	mRNA-Seq whole-transcriptome analysis of a single cell [My Copy] Nature Methods, Vol. 6, No. 5. (06 April 2009), pp. 377-382. by Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, et al.Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B. Tuch, Asim Siddiqui, Kaiqin Lao, M. Azim Surani posted to sequencing rna-seq by inesdesantiago on 2009-11-06 16:47:26 as along with 14 people heliopais manduca debasis Vincent_Rouilly mtagaya woodson8 gdb guhjy kintoki fenghezi absterga jbhiatt pengchy sleepingcell
	How to map billions of short reads onto genomes. [My Copy] Nature biotechnology, Vol. 27, No. 5. (May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to software short-read sequencing mapping by torfinnnome on 2009-11-05 12:21:58 as along with 22 people and 4 groups daforerog jonilaserson mkiyer Annab darian polivares ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	Summary of the Online Focus on next-generation sequencing data analysis [My Copy] Nature Methods, Vol. 6, No. 11. (01 November 2009), pp. 802-803. posted to sequencing nature assembly by seb1 on 2009-11-03 16:39:36 as along with 1 person GeeSharpMinor
	Foreword [My Copy] Nature Methods, Vol. 6, No. 11. (November 2009), pp. 801-801. by Nicole Rusk posted to sequencing nature by seb1 on 2009-11-03 16:39:13 as
	Computational methods for discovering structural variation with next-generation sequencing [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S13-S20. by Paul Medvedev, Monica Stanciu, Michael Brudno posted to statistics sequencing cnv by sameersoi on 2009-11-03 16:15:29 as along with 9 people and 1 group jasontsai heliopais druvus GeeSharpMinor Peiyong n00c gdv desany qayub Journal picks
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to sequencing nature ebi birney assembly by seb1 on 2009-11-03 16:07:27 as along with 9 people Thaverkamp jasontsai natstreet druvus chvlyl GeeSharpMinor n00c venancio desany
	VarScan: variant detection in massively parallel sequencing of individual and pooled samples [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2283-2285. by Daniel C. Koboldt, Ken Chen, Todd Wylie, et al.David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding posted to sequencing by seb1 on 2009-11-03 15:36:15 as along with 12 people and 3 groups heliopais mkiyer dakelley djkt PabloMarin guhjy n00c orzenil natstreet druvus stajich malcook Journal picks Mycology SIMR bioinformatics
	Enrichment of sequencing targets from the human genome by solution hybridization [My Copy] Genome Biology, Vol. 10, No. 10. (16 October 2009), R116. by Ryan Tewhey, Masakazu Nakano, Xiaoyun Wang, et al.Carlos P. Pena, Barbara Novak, Angelica Giuffre, Eric Lin, Scott Happe, Doug Roberts, Emily LeProust, Eric Topol, Olivier Harismendy, Kelly Frazer posted to snps sequencing popgen by djkt on 2009-11-03 01:41:15 as along with 1 person seb1
	ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads [My Copy] Genome Biology, Vol. 10, No. 10. (1 October 2009), R103. by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe posted to sequencing assembly by djkt on 2009-11-03 01:40:24 as along with 10 people and 1 group n00c azazello dakelley jgill GustavoLacerda ramonvidal justinhjohnson stajich druvus neils Mycology
	Every genome sequence needs a good map [My Copy] Genome Research, Vol. 19, No. 11. (13 November 2009), pp. 1925-1928. by Harris A. Lewin, Denis M. Larkin, Joan Pontius, Stephen J. O'Brien posted to sequencing review opinion mapping genomics by neils on 2009-11-02 22:24:50 as along with 3 people jasontsai druvus natstreet
	inGAP: an integrated next-generation genome analysis pipeline [My Copy] Bioinformatics (30 October 2009), btp615. by Ji Qi, Fangqing Zhao, Anne Buboltz, Stephan C. Schuster posted to snp-discovery snp sequencing pipeline ingap coverage 454 by n00c on 2009-11-02 21:10:08 as along with 4 people jasontsai natstreet heliopais druvus
	Rapid identification of homologous recombinants and determination of gene copy number with reference/query pyrosequencing (RQPS) [My Copy] Genome Research, Vol. 19, No. 11. (November 2009), pp. 2081-2089. by Zhenyi Liu, Anna C. Obenauf, Michael R. Speicher, Raphael Kopan posted to sequencing cnv by sameersoi on 2009-11-02 19:37:05 as
	An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer [My Copy] Nat Biotech, Vol. 27, No. 11. (01 November 2009), pp. 1005-1011. by Xiao-Song Wang, John R. Prensner, Guoan Chen, et al.Qi Cao, Bo Han, Saravana M. Dhanasekaran, Rakesh Ponnala, Xuhong Cao, Sooryanarayana Varambally, Dafydd G. Thomas, Thomas J. Giordano, David G. Beer, Nallasivam Palanisamy, Maureen A. Sartor, Gilbert S. Omenn, Arul M. Chinnaiyan posted to sequencing gene fusions cancer by chvlyl on 2009-11-02 12:33:38 as along with 1 person frohike
	BARCRAWL and BARTAB: Software tools for the design and implementation of barcoded primers for highly multiplexed DNA sequencing [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 October 2009), 362. by Daniel Frank posted to sequencing barcode by druvus on 2009-11-02 08:57:02 as along with 4 people and 1 group natstreet MarkFiers ppgardne heliopais Journal picks
	Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 289-293. by Erez Lieberman-Aiden, Nynke L. van Berkum, Louise Williams, et al.Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R. Lajoie, Peter J. Sabo, Michael O. Dorschner, Richard Sandstrom, Bradley Bernstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John Stamatoyannopoulos, Leonid A. Mirny, Eric S. Lander, Job Dekker posted to sequencing by chvlyl on 2009-11-02 07:00:49 as along with 28 people and 3 groups qayub TorstenWaldminghaus kintoki Garamonfok inesdesantiago NickFurnham DrRichardBadge roys rdiaz daveGerrard colinveal frohike nrk891 zwang timflutre afenley kshameer polivares mgatmedsci diamantis flbarroso jdoconnell fenghezi daforerog bpcusack gjuggler gdb gbloeb JLab BergmanLab Journal picks
	Origins and functional impact of copy number variation in the human genome [My Copy] Nature, Vol. advance online publication (07 October 2009) by Donald F. Conrad, Dalila Pinto, Richard Redon, et al.Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T. Daniel Andrews, Chris Barnes, Peter Campbell, Tomas Fitzgerald, Min Hu, Chun H. Ihm, Kati Kristiansson, Daniel G. MacArthur, Jeffrey R. MacDonald, Ifejinelo Onyiah, Andy W. Pang, Sam Robson, Kathy Stirrups, Armand Valsesia, Klaudia Walter, John Wei, Chris Tyler-Smith, Nigel P. Carter, Charles Lee, Stephen W. Scherer, Matthew E. Hurles posted to variation sequencing number copy cnv by chvlyl on 2009-11-02 06:57:51 as along with 16 people and 1 group psique daed daforerog zufar jessopher DrRichardBadge operon colinveal frohike sf11 sameersoi polivares dswan qayub bpcusack rdiaz Journal picks
	Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution [My Copy] Nature, Vol. 461, No. 7265. (08 October 2009), pp. 809-813. by Sohrab P. Shah, Ryan D. Morin, Jaswinder Khattra, et al.Leah Prentice, Trevor Pugh, Angela Burleigh, Allen Delaney, Karen Gelmon, Ryan Guliany, Janine Senz, Christian Steidl, Robert A. Holt, Steven Jones, Mark Sun, Gillian Leung, Richard Moore, Tesa Severson, Greg A. Taylor, Andrew E. Teschendorff, Kane Tse, Gulisa Turashvili, Richard Varhol, Rene L. Warren, Peter Watson, Yongjun Zhao, Carlos Caldas, David Huntsman, Martin Hirst, Marco A. Marra, Samuel Aparicio posted to snp sequencing cancer breast by chvlyl on 2009-11-02 06:55:07 as along with 11 people and 2 groups jwfoley stubrown giovenko frohike brianb Zephyrus jsuchit mkiyer torfinnnome merpublic djkt Chinnaiyan Lab Journal picks
	Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. [My Copy] Nature genetics, Vol. 40, No. 6. (27 June 2008), pp. 722-729. by Peter J. Campbell, Philip J. Stephens, Erin D. Pleasance, et al.Sarah O'Meara, Heng Li, Thomas Santarius, Lucy A. Stebbings, Catherine Leroy, Sarah Edkins, Claire Hardy, Jon W. Teague, Andrew Menzies, Ian Goodhead, Daniel J. Turner, Christopher M. Clee, Michael A. Quail, Antony Cox, Clive Brown, Richard Durbin, Matthew E. Hurles, Paul A. Edwards, Graham R. Bignell, Michael R. Stratton, P. Andrew Futreal posted to sequencing cancer by chvlyl on 2009-11-01 07:39:20 as along with 12 people dakelley APRegier myzhang jessopher frohike smiddha xingxu daed matthewsuderman jfr caseybrown chrisamiller
	Targeted capture and massively parallel sequencing of 12 human exomes [My Copy] Nature, Vol. 461, No. 7261. (16 August 2009), pp. 272-276. by Sarah B. Ng, Emily H. Turner, Peggy D. Robertson, et al.Steven D. Flygare, Abigail W. Bigham, Choli Lee, Tristan Shaffer, Michelle Wong, Arindam Bhattacharjee, Evan E. Eichler, Michael Bamshad, Deborah A. Nickerson, Jay Shendure posted to sequencing exomes by chvlyl on 2009-11-01 07:29:42 as along with 20 people and 1 group ongenetics psique fenghezi n00c dswan jmanning2k torfinnnome GeeSharpMinor pkonings neils djkt daforerog PabloMarin stubrown danmaclean xingxu vplagnol druvus jandot frohike Journal picks
	The GNUMAP Algorithm: Unbiased Probabilistic Mapping of Oligonucleotides from Next-Generation Sequencing. [My Copy] Bioinformatics (Oxford, England) (27 October 2009), btp614. by Nathan L. Clement, Quinn Snell, Mark J. Clement, et al.Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson posted to software sequencing genomics bioinformatics assembly by operon on 2009-10-31 00:48:49 as along with 3 people heliopais n00c druvus
	NGSView: an extensible open source editor for next-generation sequencing data. [My Copy] Bioinformatics (Oxford, England) (24 October 2009), btp611. by Erik Arner, Yoshihide Hayashizaki, Carsten O. Daub posted to software sequencing genomics by operon on 2009-10-31 00:46:52 as along with 3 people heliopais n00c druvus
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted to variant structure sequencing mapping genome cnv by n00c on 2009-10-30 19:28:05 as along with 34 people and 2 groups daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber APRegier Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 GeneGo Koch_Lab
	SOAP2: an improved ultrafast tool for short read alignment [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1966-1967. by Ruiqiang Li, Chang Yu, Yingrui Li, et al.Tak-Wah Lam, Siu-Ming Yiu, Karsten Kristiansen, Jun Wang posted to software short-reads sequencing bwa alignment by torfinnnome on 2009-10-30 11:12:08 as along with 25 people and 6 groups agbiotec natstreet cthachuk jforment GustavoLacerda adijr bozdagd stubrown polivares guhjy ollieredfernwork operon cassj adamjamesreid Stew jamselem dswan idonaldson TRHvidsten humburg djkt farhat n00c jmeppley druvus Bioinformatics Core Service BergmanLab Orengo Group Journal Picks Bioinformatics - CRUK Bioinformatics Journal picks
	TagDust--a program to eliminate artifacts from next generation sequencing data [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2839-2840. by Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub posted to sequencing map by chvlyl on 2009-10-30 07:37:59 as along with 18 people and 1 group operon kshameer djkt rtogawa seb1 idonaldson nuin debasis jgill GeeSharpMinor sotacam torfinnnome walshtp heliopais jandot n00c rschulz druvus Journal picks
	Genetic diagnosis by whole exome capture and massively parallel DNA sequencing [My Copy] Proceedings of the National Academy of Sciences (27 October 2009) by Murim Choi, Ute I. Scholl, Weizhen Ji, et al.Tiewen Liu, Irina R. Tikhonova, Paul Zumbo, Ahmet Nayir, AyÅin BakkaloÄlu, Seza Ãzen, Sami Sanjad, Carol Nelson-Williams, Anita Farhi, Shrikant Mane, Richard P. Lifton posted to whole sequencing parallel massively genetic exome dna diagnosis capture by Peiyong on 2009-10-30 07:05:36 as along with 2 people chvlyl giovanni
	Genetic Variation in an Individual Human Exome [My Copy] PLoS Genet, Vol. 4, No. 8. (2008), e1000160. by Pauline C. Ng, Samuel Levy, Jiaqi Huang, et al.Timothy B. Stockwell, Brian P. Walenz, Kelvin Li, Nelson Axelrod, Dana A. Busam, Robert L. Strausberg, Craig J. Venter posted to sequencing next generation exome deep by Peiyong on 2009-10-30 06:59:53 as along with 13 people giovanni jasontsai lp2 daforerog xingxu madreach misonneh djkt bpcusack caseybrown Ema guhjy reyez
	Cancer genome sequencing: a review [My Copy] Hum. Mol. Genet., Vol. 18, No. R2. (15 October 2009), pp. R163-168. by Elaine R. Mardis, Richard K. Wilson posted to sequencing cancer by desany on 2009-10-28 21:31:38 as along with 2 people dakelley jmanning2k
	Genomics: Massively parallel sequencing [My Copy] Nature, Vol. 437, No. 7057. (14 September 2005), pp. 326-327. by Yu-Hui Rogers, J. Craig Venter posted to venter sequencing by seb1 on 2009-10-28 18:12:17 as along with 4 people and 1 group dayjm arve cdawson mcox GIG
	Next-generation sequencing-by-hybridization [My Copy] Nature Biotechnology, Vol. 26, No. 6. (01 June 2008), pp. 649-650. by Paul M. Lizardi posted to sequencing by seb1 on 2009-10-28 18:10:23 as
	Next-generation DNA sequencing [My Copy] Nature Biotechnology, Vol. 26, No. 10. (09 October 2008), pp. 1135-1145. by Jay Shendure, Hanlee Ji posted to sequencing next-generation by seb1 on 2009-10-28 18:07:46 as along with 41 people and 3 groups giovenko heliopais installe niallhaslam Vincent_Rouilly rschulz fishtank bluto Annab katholt jmcq michaelbarton n00c jfr dna nzm farhat idoerg mhz mmartin antonkratz jbhiatt yupu behindtherabbit guhjy Pascalichouchou frohike dakelley ptrobajo zwang Zephyrus psique natstreet druvus nuin alexknight reyez dbk wsjames pengchy GeeSharpMinor Bioinformatics Roswell Cancer Crosstalk Oxford Virology
	The need for speed [My Copy] Genome Biology, Vol. 10, No. 3. (2009), 212. by Paul Flicek posted to short-read sequencing mapping by seb1 on 2009-10-28 17:57:08 as along with 3 people and 1 group n00c ghattem druvus SIMR bioinformatics
	Using quality scores and longer reads improves accuracy of Solexa read mapping [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 February 2008), 128. by Andrew Smith, Zhenyu Xuan, Michael Zhang posted to sequencing mapping by seb1 on 2009-10-28 17:55:52 as along with 17 people heliopais bozdagd katholt inesdesantiago n00c maren floatingpoint lukaswindhager natstreet druvus jfr pengchy farhat ghattem mdimon kmdaily caseybrown
	ISOLATE: a computational strategy for identifying the primary origin of cancers using high-throughput sequencing [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2882-2889. by Gerald Quon, Quaid Morris posted to sequencing python predict gene expression cancer algorithm by torfinnnome on 2009-10-28 15:01:57 as along with 4 people ptrobajo brianb nuin bgordski
	Comparison of next generation sequencing technologies for transcriptome characterization. [My Copy] BMC genomics, Vol. 10, No. 1. (1 August 2009), 347. by P. Kerr Wall, Jim Leebens-Mack, André S. Chanderbali, et al.Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn P. Tomsho, Yi Hu, John E. Carlson, Hong Ma, Stephan C. Schuster, Douglas E. Soltis, Pamela S. Soltis, Naomi Altman, Claude W. dePamphilis posted to technology sequencing by daveGerrard on 2009-10-27 15:53:33 as along with 18 people and 4 groups daforerog feeldead n00c debasis jgill mqbphcw3 sotacam GustavoLacerda adamjamesreid dswan mlog gwallau ewilban1 ThomasDOtto jasontsai polivares natstreet druvus Journal picks Bioinformatics LabDros BergmanLab
	Real-Time DNA Sequencing from Single Polymerase Molecules [My Copy] Science, Vol. 323, No. 5910. (2 January 2009), pp. 133-138. by John Eid, Adrian Fehr, Jeremy Gray, et al.Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex deWinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner posted to sequencing genomics by operon on 2009-10-26 16:19:13 as along with 37 people and 3 groups n00c kinestetika mtagaya jlgreen dna idoerg absterga lukzky ImranRaoufMalik Archaeogenetics inesdesantiago 7ac5 wimufi cactus jasontsai mlangill melting polivares pkonings natstreet fhalbrit druvus felsani samjlord Stew ghattem nedwards myzhang pengchy jbhiatt GeeSharpMinor GustavoLacerda azazello sconlan alexknight emptyhb caseybrown iSEEM moernerlab Bioinformatics - CRUK
	Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 404. by Nicole Quinn, Natasha Levenkova, William Chow, et al.Pascal Bouffard, Keith Boroevich, James Knight, Thomas Jarvie, Krzysztof Lubieniecki, Brian Desany, Ben Koop, Timothy Harkins, William Davidson posted to sequencing salmon fish 454 by seb1 on 2009-10-26 12:55:38 as along with 4 people natstreet druvus orzenil neils
	De novo transcriptome assembly with ABySS [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2872-2877. by Inanc Birol, Shaun D. Jackman, Cydney B. Nielsen, et al.Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Doug E. Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J. M. Jones posted to software short-read sequencing novo de assembly abyss by torfinnnome on 2009-10-26 07:45:22 as along with 8 people dakelley TRHvidsten rtogawa ramonvidal stubrown darshan GustavoLacerda druvus
	Exon sequences at the splice junctions affect splicing fidelity and alternative splicing [My Copy] Proceedings of the National Academy of Sciences (23 October 2009) by Luciana B. Crotti, David S. Horowitz posted to splicing sequencing by giovanni on 2009-10-24 17:41:08 as
	Updates to the RMAP short-read mapping software [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2841-2842. by Andrew D. Smith, Wen-Yu Chung, Emily Hodges, et al.Jude Kendall, Greg Hannon, James Hicks, Zhenyu Xuan, Michael Q. Zhang posted to sequencing by djkt on 2009-10-23 23:53:12 as along with 6 people and 1 group natstreet rtogawa idonaldson heliopais n00c druvus Journal picks
	Four-color DNA sequencing with 3'-O-modified nucleotide reversible terminators and chemically cleavable fluorescent dideoxynucleotides [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 27. (8 July 2008), pp. 9145-9150. by Jia Guo, Ning Xu, Zengmin Li, et al.Shenglong Zhang, Jian Wu, Dae H. Kim, Mong Sano Marma, Qinglin Meng, Huanyan Cao, Xiaoxu Li, Shundi Shi, Lin Yu, Sergey Kalachikov, James J. Russo, Nicholas J. Turro, Jingyue Ju posted to sequencing by manduca on 2009-10-23 20:47:20 as
	Genome sequencing in microfabricated high-density picolitre reactors [My Copy] Nature, Vol. 437, No. 7057. (15 July 2005), pp. 376-380. by Marcel Margulies, Michael Egholm, William E. Altman, et al.Said Attiya, Joel S. Bader, Lisa A. Bemben, Jan Berka, Michael S. Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B. Dewell, Lei Du, Joseph M. Fierro, Xavier V. Gomes, Brian C. Godwin, Wen He, Scott Helgesen, Chun H. Ho, Gerard P. Irzyk, Szilveszter C. Jando, Maria L. I. Alenquer, Thomas P. Jarvie, Kshama B. Jirage, Jong-Bum Kim, James R. Knight, Janna R. Lanza, John H. Leamon, Steven M. Lefkowitz, Ming Lei, Jing Li, Kenton L. Lohman, Hong Lu, Vinod B. Makhijani, Keith E. Mcdade, Michael P. Mckenna, Eugene W. Myers, Elizabeth Nickerson, John R. Nobile, Ramona Plant, Bernard P. Puc, Michael T. Ronan, George T. Roth, Gary J. Sarkis, Jan F. Simons, John W. Simpson, Maithreyan Srinivasan, Karrie R. Tartaro, Alexander Tomasz, Kari A. Vogt, Greg A. Volkmer, Shally H. Wang, Yong Wang, Michael P. Weiner, Pengguang Yu, Richard F. Begley, Jonathan M. Rothberg posted to sequencing 454 by seb1 on 2009-10-23 18:14:22 as along with 36 people and 5 groups pachorip katiehumphry jonilaserson michaelbarton sandfire natstreet daforerog idoerg mmartin azazello jbhiatt alessandrobrozzi leechuck bjorns dayjm jmeppley arve RMGraze JAShapiro balajis cdawson AaronDarling treangen usagi-kirin beatrizfernandez wenhan xingxu erbon tpreeprem farhat carpi bpb mcox GustavoLacerda jlgreen kieran101 Microbial-Ecology GIG gatech-compgenomics Green Lab iSEEM
	A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG) [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2863-2864. by Michael Brudno, Paul Medvedev, Jens Stoye, Francisco M. De La Vega posted to sequencing meeting brudno assembly assembler by seb1 on 2009-10-23 16:56:54 as along with 3 people idonaldson n00c druvus
	Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations [My Copy] Genome Biology, Vol. 10, No. 10. (22 October 2009), R118. by Tom Conrad, Andrew Joyce, M. Kenyon Applebee, et al.Christian Barrett, Bin Xie, Yuan Gao, Bernhard Palsson posted to sequencing next_generation evolution ecoli by druvus on 2009-10-23 09:18:06 as along with 4 people and 1 group djkt venancio nzm operon iSEEM

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solexa	144
illumina	131
genome	129
genomics	111
454	101
review	89
assembly	82
genome-analyzer	75
method	65
metagenomics	63
human	62
bioinformatics	58
cancer	54
cnv	54
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rna	49
snp	48
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algorithm	40
alignment	40
transcriptome	39
expression	36
methods	36
fourstar	35
evolution	33
microarray	33
mapping	32
technology	32
genetics	31
nextgen	27
next_generation	26
short-read	26
bacteria	25
gene	25
fivestar	24
solid	24
transcription	23
transcriptomics	23
high	22
next	22
variation	22
chip	21
snps	21
throughput	21
next-generation	20
short_read_analysis	20
methylation	19
mirna	19
resequencing	19
threestar	19
analysis	18
rna-seq	18
pcr	17
splicing	16
subassemblypaper	16
yeast	16
generation	15
genotyping	15
application	14
capture	14
high-throughput	14
microrna	14
mutation	14
nanopore	14
polymorphism	14
sanger	14
statistics	14
annotation	13
chip-seq	13
next-gen	13
ngs	13
parallel	13
popgen	13
pyrosequencing	13
association	12
gen	12
hiv	12
local-alignment	12
nextgensequencing	12
chromatin	11
exome	11
mouse	11
multiplexing	11
rna_seq	11
short	11
amaranthus	10
cpg	10
denovo	10
design	10
detection	10
drosophila	10
epigenetics	10
geneticspaper	10
history	10
model	10
sequence	10
comparative	9
comparison	9
microbial	9

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