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	Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550. by Aravind Subramanian, Pablo Tamayo, Vamsi K. Mootha, et al.Sayan Mukherjee, Benjamin L. Ebert, Michael A. Gillette, Amanda Paulovich, Scott L. Pomeroy, Todd R. Golub, Eric S. Lander, Jill P. Mesirov posted to set gsea gene enrichment by greg on 2009-11-04 14:06:56 as along with 45 people and 4 groups gbloeb miskar giovenko dolchan pattersonee mhamidi jperkins zufar ptrobajo antonkratz yaredo tmmurali VGreiff daforerog paszkows ipark-kaist bertelsen ajbattle jessopher askrajiv idonaldson ihpark chrisamiller dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat srp33 sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
	Statistical methods for gene set co-expression analysis [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2780-2786. by YounJeong Choi, Christina Kendziorski posted to set milka gene differential diabetes co-expression by ptrobajo on 2009-11-02 10:44:17 as along with 7 people and 1 group jperkins natstreet heliopais dolchan zufar rdiaz neils Orengo Group Journal Picks
	Random biochemical networks: the probability of self-sustaining autocatalysis [My Copy] Journal of Theoretical Biology, Vol. 233, No. 3. (07 April 2005), pp. 327-336. by E. Mossel, M. Steel posted to set formal description autocatalytic by bernadettgaal on 2009-10-13 15:52:14 as
	The SNP ratio test: pathway analysis of genome-wide association datasets [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2762-2763. by Colm O'Dushlaine, Elaine Kenny, Elizabeth A. Heron, et al.Ricardo Segurado, Michael Gill, Derek W. Morris, Aiden Corvin posted to snp set pathway gwas gene by rdiaz on 2009-10-09 10:45:52 as along with 8 people shikin zufar liqbbi daforerog natstreet pkonings guhjy druvus
	RCMAT: a regularized covariance matrix approach to testing gene sets [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 300. by Phillip Yates, Mark Reimers posted to set ontology go gene fdr by rdiaz on 2009-10-01 11:13:09 as along with 5 people and 1 group dipenps stajich heliopais barriot neils Mycology
	Analyzing gene expression data in terms of gene sets: methodological issues [My Copy] Bioinformatics, Vol. 23, No. 8. (15 April 2007), pp. 980-987. by Jelle J. Goeman, Peter Buhlmann posted to test statistical set methodology gene-expression gene enrichment-analysis by bertelsen on 2009-09-28 15:26:19 as along with 18 people and 3 groups zufar srp33 jperkins ptrobajo VGreiff tonamswish ipark-kaist aramesh2 ydhwang shikin raiyar ghattem jfr ealloza shigepong heliopais guhjy diging_data SIMR bioinformatics BioinfoCIPF BTS-PT-AS-CS
	Gene-set approach for expression pattern analysis [My Copy] Brief Bioinform, Vol. 9, No. 3. (17 January 2008), pp. bbn001-197. by Dougu Nam, Seon-Young Kim posted to set review gene enrichment by kemalpak on 2009-09-24 20:53:37 as along with 17 people srp33 tonamswish shikin ipark-kaist ihpark ptrobajo guhjy seemu thomaskelder lp2 giovenko AlexanderPico heliopais tmmurali yas beete klo
	Comparative study of gene set enrichment methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 275. by Luca Abatangelo, Rosalia Maglietta, Angela Distaso, et al.Annarita D'Addabbo, Teresa Creanza, Sayan Mukherjee, Nicola Ancona posted to study set methods gsea gene enrichment comparative analysis by dswan on 2009-09-14 11:56:02 as along with 10 people shikin zufar heliopais fpattyn pengchy rdiaz daforerog arjun_citeulike barriot druvus
	Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2348-2354. by Galina V. Glazko, Frank Emmert-Streib posted to set multivariate gene differential_expression by rdiaz on 2009-09-08 11:02:56 as along with 8 people shikin zufar brianb m509396 dswan natstreet guhjy neils
	Strong Coupling Between Single-Electron Tunneling and Nanomechanical Motion [My Copy] Science, Vol. 325, No. 5944. (28 August 2009), pp. 1103-1107. by G. A. Steele, A. K. Huttel, B. Witkamp, et al.M. Poot, H. B. Meerwaldt, L. P. Kouwenhoven, H. S. J. van der Zant posted to set nems nanotube dot coulomb-blockade by akhuettel on 2009-08-31 14:24:33 as
	The anti-social tagger: detecting spam in social bookmarking systems [My Copy] In AIRWeb '08: Proceedings of the 4th international workshop on Adversarial information retrieval on the web (2008), pp. 61-68. by Beate Krause, Christoph Schmitz, Andreas Hotho, Gerd Stumme posted to spam social set machine learning bibsonomy by alhoori on 2009-08-25 17:07:14 as along with 3 people cgl laurobeltrao elsantosneto
	Tunneling transport and spectroscopy in carbon nanotube quantum dots [My Copy] The Journal of Chemical Physics, Vol. 130, No. 22. (2009), 224503. by David E. Logan, Martin R. Galpin posted to theory set nanotube dot by akhuettel on 2009-08-18 15:21:06 as
	Electromotive force and huge magnetoresistance in magnetic tunnel junctions [My Copy] Nature, Vol. 458, No. 7237. (26 March 2009), pp. 489-492. by Pham N. Hai, Shinobu Ohya, Masaaki Tanaka, Stewart E. Barnes, Sadamichi Maekawa posted to alas coulombblockade emf gaas mnas mtj nanopartilcle set by kken on 2009-07-30 09:16:36 as
	Comparison Data Sets for Benchmarking QSAR Methodologies in Lead Optimization [My Copy] Journal of Chemical Information and Modeling, Vol. 0, No. 0. (0000) by Ruchi R. Mittal, Ross A. Mckinnon, Michael J. Sorich posted to 2d 3d 40 ability benchmark data diverse lead optimization predictive qsar set by zimbo1 on 2009-07-20 09:23:13 as along with 1 person carlosjavierna
	Negative regulation of NF-kappaB action by Set9-mediated lysine methylation of the RelA subunit. [My Copy] The EMBO journal, Vol. 28, No. 8. (22 April 2009), pp. 1055-1066. by X. D. Yang, B. Huang, M. Li, A. Lamb, N. L. Kelleher, L. F. Chen posted to nfkb set by guhjy on 2009-07-17 16:06:13 as
	Methyltransferase Set7/9 maintains transcription and euchromatin structure at islet-enriched genes. [My Copy] Diabetes, Vol. 58, No. 1. (January 2009), pp. 185-193. by T. G. Deering, T. Ogihara, A. P. Trace, B. Maier, R. G. Mirmira posted to dm set by guhjy on 2009-07-17 15:51:49 as
	Structural origins for the product specificity of SET domain protein methyltransferases. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 52. (30 December 2008), pp. 20659-20664. by J. F. Couture, L. M. Dirk, J. S. Brunzelle, R. L. Houtz, R. C. Trievel posted to set by guhjy on 2009-07-17 15:34:09 as
	Multiple lysine methylation of PCAF by Set9 methyltransferase. [My Copy] Biochemical and biophysical research communications, Vol. 381, No. 1. (27 March 2009), pp. 22-26. by T. Masatsugu, K. Yamamoto posted to set by guhjy on 2009-07-17 15:28:41 as
	Catalytic function of the PR-Set7 histone H4 lysine 20 monomethyltransferase is essential for mitotic entry and genomic stability. [My Copy] The Journal of biological chemistry, Vol. 283, No. 28. (11 July 2008), pp. 19478-19488. by S. I. Houston, K. J. McManus, M. M. Adams, et al.J. K. Sims, P. B. Carpenter, M. J. Hendzel, J. C. Rice posted to cell-cycle set by guhjy on 2009-07-17 15:25:52 as
	Enzymatic mechanism and product specificity of SET-domain protein lysine methyltransferases. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 15. (15 April 2008), pp. 5728-5732. by X. Zhang, T. C. Bruice posted to set by guhjy on 2009-07-17 15:25:41 as
	SET8 plays a role in controlling G1/S transition by blocking lysine acetylation in histone through binding to H4 N-terminal tail. [My Copy] Cell cycle (Georgetown, Tex.), Vol. 7, No. 10. (15 May 2008), pp. 1423-1432. by Y. Yin, V. C. Yu, G. Zhu, D. C. Chang posted to cell-cycle set by guhjy on 2009-07-17 15:23:32 as
	Specificity of protein lysine methyltransferases and methods for detection of lysine methylation of non-histone proteins. [My Copy] Molecular bioSystems, Vol. 4, No. 12. (December 2008), pp. 1186-1190. by P. Rathert, A. Dhayalan, H. Ma, A. Jeltsch posted to method methylation set by guhjy on 2009-07-17 15:23:20 as
	Product Specificity and Mechanism of Protein Lysine Methyltransferases: Insights from the Histone Lysine Methyltransferase SET8. [My Copy] Biochemistry (31 May 2008) by Xiaodong Zhang, Thomas C. Bruice posted to set by guhjy on 2009-07-17 15:23:06 as
	Regulation of estrogen receptor alpha by the SET7 lysine methyltransferase. [My Copy] Molecular cell, Vol. 30, No. 3. (9 May 2008), pp. 336-347. by K. Subramanian, D. Jia, P. Kapoor-Vazirani, et al.D. R. Powell, R. E. Collins, D. Sharma, J. Peng, X. Cheng, P. M. Vertino posted to era set by guhjy on 2009-07-17 15:22:29 as
	Epigenetics meets estrogen receptor: regulation of estrogen receptor by direct lysine methylation. [My Copy] Endocrine-related cancer, Vol. 16, No. 2. (June 2009), pp. 319-323. by Q. Zhou, P. G. Shaw, N. E. Davidson posted to epigenetics era methylation set by guhjy on 2009-07-17 15:20:54 as
	Methylation of p53 by Set7/9 mediates p53 acetylation and activity in vivo. [My Copy] Molecular cell, Vol. 29, No. 3. (15 February 2008), pp. 392-400. by J. K. Kurash, H. Lei, Q. Shen, et al.W. L. Marston, B. W. Granda, H. Fan, D. Wall, E. Li, F. Gaudet posted to p53 set by guhjy on 2009-07-17 15:18:30 as
	The histone methyltransferase SET8 is required for S-phase progression. [My Copy] The Journal of cell biology, Vol. 179, No. 7. (31 December 2007), pp. 1337-1345. by S. Jørgensen, I. Elvers, M. B. Trelle, et al.T. Menzel, M. Eskildsen, O. N. Jensen, T. Helleday, K. Helin, C. S. Sørensen posted to cell-cycle set by guhjy on 2009-07-17 15:18:10 as
	PR-Set7-dependent lysine methylation ensures genome replication and stability through S phase. [My Copy] The Journal of cell biology, Vol. 179, No. 7. (31 December 2007), pp. 1413-1426. by M. Tardat, R. Murr, Z. Herceg, C. Sardet, E. Julien posted to cell-cycle set by guhjy on 2009-07-17 15:18:02 as
	Modulation of p53 function by SET8-mediated methylation at lysine 382. [My Copy] Molecular cell, Vol. 27, No. 4. (17 August 2007), pp. 636-646. by X. Shi, I. Kachirskaia, H. Yamaguchi, et al.L. E. West, H. Wen, E. W. Wang, S. Dutta, E. Appella, O. Gozani posted to methylation p53 set by guhjy on 2009-07-17 15:17:39 as
	Mechanism of histone methylation catalyzed by protein lysine methyltransferase SET7/9 and origin of product specificity. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 21. (22 May 2007), pp. 8797-8802. by H. B. Guo, H. Guo posted to set by guhjy on 2009-07-17 15:17:14 as along with 1 person barmak7282
	Regulation of DNMT1 stability through SET7-mediated lysine methylation in mammalian cells. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 13. (31 March 2009), pp. 5076-5081. by P. O. Estève, H. G. Chin, J. Benner, et al.G. R. Feehery, M. Samaranayake, G. A. Horwitz, S. E. Jacobsen, S. Pradhan posted to dnmt methylation set by guhjy on 2009-07-17 15:09:24 as
	The peroxisome proliferator-activated receptor gamma/retinoid X receptor alpha heterodimer targets the histone modification enzyme PR-Set7/Setd8 gene and regulates adipogenesis through a positive feedback loop. [My Copy] Molecular and cellular biology, Vol. 29, No. 13. (July 2009), pp. 3544-3555. by K. Wakabayashi, M. Okamura, S. Tsutsumi, et al.N. S. Nishikawa, T. Tanaka, I. Sakakibara, J. Kitakami, S. Ihara, Y. Hashimoto, T. Hamakubo, T. Kodama, H. Aburatani, J. Sakai posted to h4k20 pparg set by guhjy on 2009-07-17 15:05:33 as
	Single Charge Tunneling: Coulomb Blockade Phenomena in Nanostructures: Coulomb Blockade Phenomena in Nanostructures [My Copy] (1992) edited by H. Grabert, M. H. Devoret posted to set sset by akhuettel on 2009-07-14 15:32:34 as
	Bitsets and bit vectors -- The Standard Librarian [My Copy] C/C++ Users J., Vol. 19, No. 5. (May 2001), pp. 58-64. by Matt Austern posted to bit cplusplus library set standard stl technical technique template vector by hgfernan on 2009-07-13 15:41:53 as
	Platform dependence of inference on gene-wise and gene-set involvement in human lung development [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (19 June 2009), 189. by Rose Du, Kelan Tantisira, Vincent Carey, et al.Soumyaroop Bhattacharya, Stephanie Metje, Alvin Kho, Barbara Klanderman, Roger Gaedigk, Ross Lazarus, Thomas Mariani, J. Leeder, Scott Weiss posted to comparison dependence development gene human inference involvement lung platform set wise by dswan to the group Bioinformatics on 2009-07-10 10:54:32 as
	Dynamic memory balancing for virtual machines [My Copy] In VEE '09: Proceedings of the 2009 ACM SIGPLAN/SIGOPS international conference on Virtual execution environments (2009), pp. 21-30. by Weiming Zhao, Zhenlin Wang posted to 2009 memory set vee virtualization working by smokerings on 2009-07-10 01:48:21 as along with 2 people mrt2k9 weirdbluelights
	Optimizing the Level Set Algorithm for Detecting Object Edges in MR and CT Images [My Copy] Nuclear Science, IEEE Transactions on In Nuclear Science, IEEE Transactions on, Vol. 56, No. 1. (2009), pp. 156-166. by M. Heydarian, M. D. Noseworthy, M. V. Kamath, C. Boylan, W. F. S. Poehlman posted to genetic_algorithm detection level set by Magneto on 2009-07-08 15:00:05 as
	Hardware/software instruction set configurability for system-on-chip processors [My Copy] In DAC '01: Proceedings of the 38th annual Design Automation Conference (2001), pp. 184-188. by Albert Wang, Earl Killian, Dror Maydan, Chris Rowen posted to asip configurability instrction processor set soc by inferno on 2009-07-08 14:48:40 as
	A retargetable, ultra-fast instruction set simulator [My Copy] Design, Automation and Test in Europe Conference and Exhibition 1999. Proceedings In Design, Automation and Test in Europe Conference and Exhibition 1999. Proceedings (1999), pp. 298-302. by Jianwen Zhu, D. D. Gajski posted to instruction set simulator by inferno on 2009-06-30 03:23:26 as
	Level Set Methods and Dynamic Implicit Surfaces [My Copy] (31 October 2002) by Stanley J. Osher, Ronald P. Fedkiw posted to dynamic implicit level method set surfaces by csrocha on 2009-06-26 18:18:13 as along with 5 people and 1 group iannis watter1985 gracev Zaphod singhsh Medical Image Analysis and Visualization @ OSU
	Optimal strictly localized basis sets for noble metal surfaces [My Copy] Physical Review B, Vol. 79, No. 7. (February 2009), 075441. by Sandra García-Gil, Alberto García, Nicolás Lorente, Pablo Ordejón posted to basis local metal set siesta surfaces by leonhardmayrhofer on 2009-06-16 17:12:40 as along with 1 person ryde
	BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Tim Hulsen, Jacob de Vlieg, Wynand Alkema posted to set venn-diagram visualization by n00c on 2009-06-13 17:20:56 as along with 21 people and 2 groups jfr lscarafia jmeppley hessec GustavoLacerda stajich dswan polivares egonw ptrobajo guhjy jameswasmuth lptolik msampson pengchy natstreet druvus barriot Zephyrus cisevol thulsen Mycology BergmanLab
	Medical Image Segmentation Based on the Bayesian Level Set Method [My Copy] Medical Imaging and Informatics (2008), pp. 25-34. by Yao-Tien Chen, Din-Chang Tseng posted to - bayesian hypothesis image level method risk segmentation set test by mkarmona on 2009-06-10 11:19:08 as
	Adaptive Variational Curve Smoothing Based on Level Set Method [My Copy] Journal of Computational Physics (20 May 2009) by Yu Wang, Songhe Song, Zhijun Tan, Desheng Wang posted to adaptive algorithm curve level mesh method set smoothing variation by michaelbussmann on 2009-06-10 09:54:47 as
	GAGE: generally applicable gene set enrichment for pathway analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 161. by Weijun Luo, Michael Friedman, Kerby Shedden, Kurt Hankenson, Peter Woolf posted to analysis data enrichment gage gene gsea microarray pathway set by dswan to the group Bioinformatics on 2009-06-09 11:30:42 as along with 12 people and 1 group dipenps sotacam GustavoLacerda guhjy ptrobajo VGreiff thegoose vinithepooh kshameer renatomilani cassj stajich Mycology
	Microwave excitation of localized electrons in phosphorus-doped silicon single electron transistors [My Copy] Journal of Applied Physics, Vol. 105, No. 10. (2009), 104508. by L. A. Creswell, D. G. Hasko, D. A. Williams posted to microwave set silicon by akhuettel on 2009-06-05 23:58:51 as
	Electronic Radio-Frequency Refrigerator [My Copy] (2 Jun 2009) by S. Kafanov, A. Kemppinen, Yu, M. Meschke, J. S. Tsai, J. P. Pekola posted to cooling rf-set set superconductor by akhuettel on 2009-06-04 22:17:36 as
	Dynamical instabilities of a resonator driven by a superconducting single-electron transistor [My Copy] New J. Phys., Vol. 9, No. 4. (April 2007), 84. by D. A. Rodrigues, J. Imbers, T. J. Harvey, A. D. Armour posted to nems resonator set sset theory by akhuettel on 2009-05-25 19:31:45 as along with 1 person and 1 group FlorianMarquardt Optomechanics
	Room temperature operation of a single electron transistor made by the scanning tunneling microscope nanooxidation process for the TiO[sub x]/Ti system [My Copy] Applied Physics Letters, Vol. 68, No. 1. (1996), pp. 34-36. by K. Matsumoto, M. Ishii, K. Segawa, Y. Oka, B. J. Vartanian, J. S. Harris posted to afm lao set by JohnnyP on 2009-05-24 16:16:23 as
	Bayesian Sets [My Copy] In in Advances in Neural Information Processing Systems, Vol. 18 (2005) by Zoubin G. And, Zoubin Ghahramani, Katherine A. Heller posted to association bayesian googleset recommendation set by anon_pl on 2009-05-22 20:26:25 as

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algorithm	44
graph	40
feedback	39
gene	39
theory	25
level	24
arc	21
enrichment	21
vertex	18
data	17
analysis	14
microarray	12
aggregation	9
gsea	9
methylation	9
rank	9
bipartite	8
image	8
methods	8
segmentation	8
shifting	8
tournament	8
social	7
cantor	6
distance	6
expression	6
human	6
method	6
methodology	6
nems	6
of	6
test	6
comparison	5
fuzzy	5
pathway	5
qsar	5
statistical	5
active	4
backaction	4
cardiac	4
cell-cycle	4
coulomb-blockade	4
desirability	4
instruction	4
model	4
neo	4
optimization	4
representation	4
response	4
snp	4
time	4
arithmetic	3
basis	3
biological	3
cancer	3
cluster	3
coding	3
cohen	3
comparative	3
compression	3
contours	3
database	3
enrichment-analysis	3
flexibility	3
fmri	3
framework	3
function	3
gene-expression	3
history	3
imaging	3
implicit	3
inconsistency	3
linear	3
local	3
logic	3
measure	3
motives	3
multivariate	3
nfkb	3
p53	3
physical	3
problem	3
resonator	3
security	3
sets	3
shape	3
signal	3
similarity	3
technique	3
training	3
transfinite	3
transform	3
transforms	3
asip	2
distribution	2
general	2
global-scaling	2
partitioning	2
soc	2
solvation	2

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