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	EASYMIFS and SITEHOUND: a toolkit for the identification of ligand-binding sites in protein structures [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3185-3186. by Dario Ghersi, Roberto Sanchez posted to toolkit structures site protein propensity molecular ligand interaction field binding by zimbo1 on 2009-11-26 16:40:15 as along with 1 person apaydin
	Structural Analysis of Lac Repressor Bound to Allosteric Effectors [My Copy] Journal of Molecular Biology, Vol. 370, No. 4. (20 July 2007), pp. 609-619. by Robert Daber, Steven Stayrook, Allison Rosenberg, Mitchell Lewis posted to site laci binding by Gabriel439 on 2009-11-20 18:45:12 as
	The Splicing Factor BBP Interacts Specifically with the Pre-mRNA Branchpoint Sequence UACUAAC [My Copy] Cell, Vol. 89, No. 5. (30 May 1997), pp. 781-787. by J. Berglund, K. Chua, N. Abovich, R. Reed, M. Rosbash posted to site branch by gregoryross on 2009-11-05 11:04:53 as
	Use of the 'Perceptron' algorithm to distinguish translational initiation sites in E. coli. [My Copy] Nucleic acids research, Vol. 10, No. 9. (11 May 1982), pp. 2997-3011. by G. D. Stormo, T. D. Schneider, L. Gold, A. Ehrenfeucht posted to weight translation site pwm position matrix initiation by Mehlhorn on 2009-10-28 16:17:32 as along with 1 person dquest
	Prediction of Protein Binding Regions in Disordered Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (1 May 2009), e1000376. by Bálint Mészáros, István Simon, Zsuzsanna Dosztányi posted to site regions prediction disordered binding 23-oct-09 by CorinYeats to the group Orengo Group Journal Picks on 2009-10-23 11:53:48 as along with 3 people kiekyon hryk niallhaslam
	Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks [My Copy] Computational Biology and Chemistry, Vol. 30, No. 1. (February 2006), pp. 50-57. by S. Marashi, H. Goodarzi, M. Sadeghi, C. Eslahchi, H. Pezeshk posted to splice site neural networks by marashi on 2009-10-15 09:40:43 as along with 1 person raylim
	SCOPEC: a database of protein catalytic domains [My Copy] Bioinformatics, Vol. 20, No. suppl_1. (4 Aug 2004), pp. i130-136. by Richard A. George, Ruth V. Spriggs, Janet M. Thornton, Bissan Al-Lazikani, Mark B. Swindells posted to structure site protein inactive enzyme catalytic by robfsouza on 2009-10-07 17:00:53 as along with 5 people ucbcjbm pablocarb shung gbart tny
	Identification of protein functional surfaces by the concept of a split pocket [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2009), pp. 959-976. by Yan Y. Tseng, Wen-Hsiung Li posted to site protein oct09 identification binding by nickolay on 2009-10-07 15:11:46 as along with 1 person and 1 group AliC Orengo Group Journal Picks
	A Dual Methodology for Case Studies: Synergistic Use of a Longitudinal Single Site with Replicated Multiple Sites [My Copy] ORGANIZATION SCIENCE, Vol. 1, No. 3. (1 August 1990), pp. 248-266. by Dorothy Leonard-Barton posted to use synergistic studies sites site single replicated multiple methodology longitudinal dual case by derchao on 2009-10-06 18:59:04 as
	A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions [My Copy] Nucl. Acids Res., Vol. 16, No. 15. (11 August 1988), pp. 7351-7367. by Russell Higuchi, Barbara Krummel, Randall Saiki posted to site pcr mutagenesis directed by roshniwadhwani on 2009-10-05 18:37:38 as along with 1 person kristallreiner
	Amino Acid Replacements at the H2-Activating Site of the NAD-Reducing Hydrogenase from Alcaligenes eutrophus† [My Copy] Biochemistry, Vol. 38, No. 43. (1 October 1999), pp. 14330-14337. by Christian Massanz, Barbel Friedrich posted to site mutagenesis hydrogenase eutrophus directed alcaligenes by roshniwadhwani on 2009-10-05 12:17:10 as
	Native and mutant nickel–iron hydrogenases: Unravelling structure and function [My Copy] Coordination Chemistry Reviews, Vol. 249, No. 15-16. (August 2005), pp. 1596-1608. by A. Lacey, V. Fernandez, M. Rousset posted to structure site nife mutation mutagenesis hydrogenases function directed by roshniwadhwani on 2009-10-03 17:11:46 as
	[3Fe-4S] to [4Fe-4S] cluster conversion in Desulfovibrio fructosovorans [NiFe] hydrogenase by site-directed mutagenesis [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 20. (29 September 1998), pp. 11625-11630. by Marc Rousset, Yael Montet, Bruno Guigliarelli, et al.Nicole Forget, Marcel Asso, Patrick Bertrand, Juan C. Fontecilla-Camps, E. Claude Hatchikian posted to sulphur site nife mutagenesis iron hydrogenase fructosovorans directed cluster by roshniwadhwani on 2009-10-03 17:01:00 as along with 2 people MMR cp
	The role of the active site-coordinating cysteine residues in the maturation of the H 2-sensing [NiFe] hydrogenase from Ralstonia eutropha H16 [My Copy] Archives of Microbiology, Vol. 182, No. 2. (17 October 2004), pp. 138-146. by Gordon Winter, Thorsten Buhrke, Anne K. Jones, Bärbel Friedrich posted to site sensing ralstonia nife hydrogenase hydrogen cysteine active by roshniwadhwani on 2009-10-03 16:52:20 as
	Impact of alterations near the [NiFe] active site on the function of the H2 sensor from Ralstonia�eutropha [My Copy] FEBS Journal, Vol. 274, No. 1. (January 2007), pp. 74-85. by Antje Gebler, Tanja Burgdorf, Antonio L. De Lacey, et al.Olaf Rüdiger, Arturo Martinez-Arias, Oliver Lenz, Bärbel Friedrich posted to site sensor ralstonia nife mutations hydrogenase hydrogen active by roshniwadhwani on 2009-10-03 16:46:57 as
	Spectroscopic and kinetic characterization of active site mutants of Desulfovibrio fructosovorans Ni-Fe hydrogenase [My Copy] Journal of Biological Inorganic Chemistry, Vol. 8, No. 1. (1 January 2003), pp. 129-134. by Antonio De Lacey, Victor Fernandez, Marc Rousset, Christine Cavazza, Claude Hatchikian posted to site nife mutant hydrogenase fructosovorans desulfovibrio active by roshniwadhwani on 2009-10-03 14:25:15 as
	Prediction of protein-protein binding site by using core interface residue and support vector machine [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (22 December 2008), 553. by Nan Li, Zhonghua Sun, Fan Jiang posted to vector using support site residue protein-protein prediction of machine interface core by binding and by jinghu_fandm on 2009-09-18 17:25:41 as along with 1 person reyez
	Molecular characterization of a common binding site for small molecules within the transmembrane domain of G-protein coupled receptors [My Copy] Journal of Pharmacological and Toxicological Methods, Vol. 33, No. 4. (August 1995), pp. 179-185. by Margaret A. Cascieri, Tung M. Fong, Catherine D. Strader posted to transmembrane site gpcr domain binding by LaetitiaBigot on 2009-08-26 14:34:38 as
	The molecular structure of mitochondrial contact sites. Their role in regulation of energy metabolism and permeability transition. [My Copy] BioFactors (Oxford, England), Vol. 8, No. 3-4. (1998), pp. 235-242. by D. Brdiczka, G. Beutner, A. Rück, M. Dolder, T. Wallimann posted to brdicz98pdf contact energy metabolism mitochondria pt site by paulschlesinger on 2009-08-07 01:08:30 as
	Relating destabilizing regions to known functional sites in proteins. [My Copy] BMC bioinformatics, Vol. 8 (30 April 2007), 141. by Benoît H. Dessailly, Marc F. Lensink, Shoshana J. Wodak posted to destabilizing functional protein region site structure by bdessailly to the group Orengo Group Journal Picks on 2009-08-03 04:25:50 as along with 1 person and 1 group Einat structural_bioinformatics
	Target site selection by the mariner-like element, Mos1 [My Copy] Genetica by Gwénaelle Crénès, Corinne Moundras, Marie-Véronique Demattei, Yves Bigot, Agnès Petit, Sylvaine Renault posted to mariner-like mos1 site target by gwallau on 2009-07-29 17:31:06 as
	New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites. [My Copy] Genome research, Vol. 19, No. 7. (31 July 2009), pp. 1175-1183. by Inhan Lee, Subramanian S. Ajay, Jong In I. Yook, et al.Hyun Sil S. Kim, Su Hyung H. Hong, Nam Hee H. Kim, Saravana M. Dhanasekaran, Arul M. Chinnaiyan, Brian D. Athey posted to 3primerutr 5primeutr class interaction mirna new recognition site by fpattyn on 2009-07-02 11:48:31 as along with 16 people and 5 groups danaiancu hzoltan ebcgantman jfr ashkelon13 heliopais megraw fenghezi tmmurali ppgardne tonamswish stajich Einat daforerog valeriehilgers ealloza Neuroblastoma Journal picks microRNA Mycology cube_and_beyond
	Diversity and Complexity in DNA Recognition by Transcription Factors [My Copy] Science, Vol. 324, No. 5935. (26 June 2009), pp. 1720-1723. by Gwenael Badis, Michael F. Berger, Anthony A. Philippakis, et al.Shaheynoor Talukder, Andrew R. Gehrke, Savina A. Jaeger, Esther T. Chan, Genita Metzler, Anastasia Vedenko, Xiaoyu Chen, Hanna Kuznetsov, Chi-Fong Wang, David Coburn, Daniel E. Newburger, Quaid Morris, Timothy R. Hughes, Martha L. Bulyk posted to binding dna factor motif site transcription by mingzhi on 2009-07-01 02:55:10 as along with 22 people and 1 group nklee sconlan isimpson jbhiatt daforerog absterga galka8_diploma fenghezi TRHvidsten ilyashl cambray rpatward tibbitts dpollard siebert JustinCrocker burak aalibes dipenps roys emptyhb tmmurali RockmanLab
	MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression [My Copy] Nucl. Acids Res., Vol. 37, No. Web Server issue. (6 May 2009), pp. gkp294-362. by Seungyoon Nam, Meng Li, Kwangmin Choi, Curtis Balch, Sun Kim, Kenneth P. Nephew posted to analysis application biological examining expression functions integrated microrna mrna server site tool web workflow by dswan to the group Bioinformatics on 2009-06-30 10:39:33 as along with 6 people and 2 groups PabloMarin guhjy nuin heliopais ealloza daforerog Journal picks microRNA
	GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W323-328. by Alexey V. Antonov, Sabine Dietmann, Philip Wong, Dominik Lutter, Hans W. Mewes posted to activity application cooperative gene lists microrna server signature site web by dswan to the group Bioinformatics on 2009-06-30 10:33:30 as along with 4 people GustavoLacerda ealloza guhjy daforerog
	DIANA-microT web server: elucidating microRNA functions through target prediction. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W273-276. by M. Maragkakis, M. Reczko, V. A. Simossis, et al.P. Alexiou, G. L. Papadopoulos, T. Dalamagas, G. Giannopoulos, G. Goumas, E. Koukis, K. Kourtis, T. Vergoulis, N. Koziris, T. Sellis, P. Tsanakas, A. G. Hatzigeorgiou posted to application functions microrna prediction server site target web by dswan to the group Bioinformatics on 2009-06-30 10:29:45 as along with 5 people and 1 group PabloMarin daforerog gbloeb nuin guhjy Journal picks
	MirZ: an integrated microRNA expression atlas and target prediction resource. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W266-272. by Jean Hausser, Philipp Berninger, Christoph Rodak, Yvonne Jantscher, Stefan Wirth, Mihaela Zavolan posted to application atlas expression integrated microrna prediction resource site target web by dswan to the group Bioinformatics on 2009-06-30 10:24:03 as along with 5 people frohike ealloza guhjy samgj daforerog
	miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W68-76. by Michael Hackenberg, Martin Sturm, David Langenberger, Juan M. Falcon-Perez, Ana M. Aransay posted to analysis application detection experiments gen generation microrna next sequencing site tool web by dswan to the group Bioinformatics on 2009-06-30 10:22:01 as along with 12 people and 1 group hzoltan druvus heliopais orzenil fishtank tonamswish natstreet guhjy fenghezi pengchy ealloza daforerog microRNA
	TopHat: discovering splice junctions with RNA-Seq. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted to rna-seq site splice tool by ThomasDOtto on 2009-06-25 13:33:36 as along with 25 people and 2 groups juokcho cthachuk hzoltan jwfoley heliopais dakelley druvus GustavoLacerda stubrown polivares torfinnnome jmcq mtagaya jonilaserson gdb guhjy n00c ghattem xingxu djkt vplagnol bertelsen natstreet idoerg vmsr BergmanLab SIMR bioinformatics
	The transposon Tn9 generates a 9 bp repeated sequence during integration. [My Copy] Cell, Vol. 15, No. 4. (December 1978), pp. 1209-1219. by L. Johnsrud, M. P. Calos, J. H. Miller posted to 9bp duplication repeat site target tn9 by katholt on 2009-06-21 14:31:25 as
	Gene organization and target specificity of the prokaryotic mobile genetic element IS26 [My Copy] Molecular and General Genetics MGG, Vol. 201, No. 2. (1 November 1985), pp. 198-203. by Beat Mollet, Shigeru Iida, Werner Arber posted to is26 random site target by katholt on 2009-06-21 13:41:19 as
	Prediction of protein interaction sites from sequence profile and residue neighbor list [My Copy] Proteins: Structure, Function, and Genetics, Vol. 44, No. 3. (2001), pp. 336-343. by Huan-Xiang Zhou, Yibing Shan posted to binding interaction prediction protein protein-protein site by HawkinsJohnC on 2009-06-16 13:09:03 as
	Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks [My Copy] Nucl. Acids Res., Vol. 37, No. 11. (1 June 2009), e82. by Federico Colecchia, Denise Kottwitz, Mandy Wagner, et al.Cosima V. Pfenninger, Gerald Thiel, Ingo Tamm, Carsten Peterson, Ulrike A. Nuber posted to cell factor gene network regulatory site software specific tf tissue transcription ts-rex web by cassj on 2009-05-25 15:20:43 as along with 1 person sephy
	Exploring the structure and function paradigm [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (Jun 2008), pp. 394-402. by O. Redfern, B. Dessailly, C. Orengo posted to binding database evolution fold orengo protein site structure by robfsouza on 2009-05-16 07:29:14 as along with 8 people and 1 group dfdong yylin bdessailly guhjy paulschlesinger marck chad_davis janasont Orengo Group Journal Picks
	MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations [My Copy] Genome Biology, Vol. 10 (01 May 2009), R46. by Jens, Ivo Grosse posted to annotation binding factor site transcription by fpattyn to the group Neuroblastoma on 2009-05-14 23:19:21 as along with 3 people megraw maximilianh bmajoros
	Distinctive Places, Suitable Spaces: Conceptualizing Mobile Group Occupational Duration and Landscape Use [My Copy] International Journal of Historical Archaeology by Deni Seymour posted to historical-archaeology mobility site use by michaelmorrison to the group Archaeology and palaeoenvironments of the Australia-Pacific region on 2009-05-12 23:39:38 as
	CodonExplorer: An Online Tool for Analyzing Codon Usage and Sequence Composition, Scaling From Genes to Genomes [My Copy] Bioinformatics (11 March 2009), btp141. by Micah Hamady, Stephanie A. Wilson, Jesse Zaneveld, Noboru Sueoka, Rob Knight posted to application codon composition database genes genomes sequence site usage web by dswan to the group Bioinformatics on 2009-05-07 09:20:46 as along with 1 person nuin
	Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains1☆ [My Copy] Journal of Molecular Biology, Vol. 307, No. 5. (13 Apr 2001), pp. 1271-1292. by Vivek Anantharaman, Eugene V. Koonin, L. Aravind posted to small site protein molecule inactive genome fold evolution enzyme domain binding aravind by robfsouza on 2009-04-30 02:39:27 as
	Installing a local copy of the Reactome Web site and database. [My Copy] Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 9 (March 2008) by I. Vastrik posted to copy database installing local reactome resource site web by dswan on 2009-04-27 11:06:17 as
	Target site selection in transposition. [My Copy] Annual review of biochemistry, Vol. 66 (1997), pp. 437-474. by N. L. Craig posted to selection site target transposition by nikkiwithers on 2009-04-13 10:23:36 as
	Science, site and speech: scientific knowledge and the spaces of rhetoric [My Copy] History of the Human Sciences, Vol. 20, No. 2. (1 May 2007), pp. 71-98. by David N. Livingstone posted to americansouth darwin darwinism ireland science site space speech by josiasporter on 2009-04-01 12:01:23 as along with 3 people and 1 group ultrascichick ricmilne rrbarb Locating Technoscience
	Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins [My Copy] BMC Bioinformatics, Vol. 8 (05 May 2007), 147. by Qiwen Dong, Xiaolong Wang, Lei Lin, Yi Guan posted to algorithm binding bsc interaction prediction props protein site by nickolay on 2009-03-29 17:40:36 as along with 4 people iaolier bicko zwang marti
	Eukaryotic proteins expressed in : An improved thrombin cleavage and purification procedure of fusion proteins with glutathione -transferase [My Copy] Analytical Biochemistry, Vol. 192, No. 2. (1 February 1991), pp. 262-267. by K. Guan, J. Dixon posted to cleavage proposal site thrombin by joseolucha on 2009-03-27 14:11:13 as
	Specialized techniques for site-directed mutagenesis in cyanobacteria. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 362 (2007), pp. 155-171. by E. M. Clerico, J. L. Ditty, S. S. Golden posted to conjugation cyanobacteria directed mutagenesis site technique by fhsantanna on 2009-03-18 17:55:43 as along with 1 person JeremyZucker
	A Transition to Laparoendoscopic Single-Site Surgery (LESS) Radical Prostatectomy: Human Cadaver Experimental and Initial Clinical Experience [My Copy] Journal of Endourology, Vol. 23, No. 1. (2009), pp. 135-140. by Eric Barret, Rafael S. Salas, Ali Kasraeian, et al.Nicolas Benoist, Anjali Ganatra, Xavier Cathelineau, Francois Rozet, Marc Galiano, Guy Vallancien posted to less robotics single site surgery surgical by khatait on 2009-03-13 13:43:39 as
	Predicting RNA-binding sites of proteins using support vector machines and evolutionary information [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 12. (2008), S6. by Cheng W. Cheng, Emily Su, Jenn K. Hwang, Ting Y. Sung, Wen L. Hsu posted to binding evolution prediction protein site svm by zwang on 2009-03-05 02:03:52 as along with 3 people balewis iaolier phoenixzxl
	Pseudocounts for transcription factor binding sites. [My Copy] Nucleic acids research, Vol. 37, No. 3. (23 February 2009), pp. 939-944. by Keishin Nishida, Martin C. Frith, Kenta Nakai posted to binding factor pseudocount site transcription by fpattyn on 2009-02-24 15:15:24 as along with 4 people and 1 group lusk Stew jkim63 nuin Bioinformatics - CRUK
	Common physical basis of macromolecule-binding sites in proteins [My Copy] Nucl. Acids Res. (6 November 2008), gkn868. by Yao C. Chen, Carmay Lim posted to binding protein site by zwang on 2009-02-24 07:45:27 as along with 4 people dfdong lptolik reyez markchen
	FRA10B structure reveals common elements in repeat expansion and chromosomal fragile site genesis. [My Copy] Molecular cell, Vol. 1, No. 6. (May 1998), pp. 773-781. by D. R. Hewett, O. Handt, L. Hobson, et al.M. Mangelsdorf, H. J. Eyre, E. Baker, G. R. Sutherland, S. Schuffenhauer, J. I. Mao, R. I. Richards posted to fragile instability mmr site by catcremona on 2009-02-20 02:10:12 as
	Chromosome Fragile Sites [My Copy] Annual Review of Genetics, Vol. 41, No. 1. (2007), pp. 169-192. by Sandra G. Durkin, Thomas W. Glover posted to fragile review site by catcremona on 2009-02-19 21:27:48 as along with 2 people oelemento jandot

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binding	106
prediction	40
protein	38
transcription	32
factor	28
structure	22
web	20
target	19
algorithm	16
bsc	15
gene	15
active	14
application	12
ic	12
mirna	12
new	12
hiv	11
interaction	11
identification	10
microrna	10
review	10
comparison	9
evolution	8
motif	8
analysis	7
database	7
sequence	7
server	7
dna	6
functional	6
computational	5
directed	5
enzyme	5
hydrogenase	5
method	5
multiple	5
mutagenesis	5
nife	5
social	5
tool	5
annotation	4
bioinformatics	4
design	4
domain	4
expression	4
functions	4
geometric	4
integrated	4
ligand	4
model	4
network	4
printed	4
selection	4
similarity	4
tfbs	4
yeast	4
binding_site	3
catalytic	3
cell	3
center	3
codon	3
cooperativity	3
drosophila	3
function	3
human	3
large-scale	3
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of	3
phosphorylation	3
proteome	3
regulation	3
resource	3
seed	3
small	3
software	3
splice	3
svm	3
usage	3
use	3
alignments	2
autonomy	2
biological	2
cooperative	2
disordered	2
divergence	2
economic	2
fructosovorans	2
gen	2
generation	2
hcg	2
mechanism	2
metazoan	2
motifs	2
name	2
nuclear	2
pattern	2
recognition	2
rna	2
snp	2
sumoylation	2

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