Tag smd [27 articles] Export

Recent papers classified by the tag smd.

	Mechanical coupling in myosin V: A simulation study [My Copy] Journal of Molecular Biology (21 October 2009) by Victor Ovchinnikov, Bernhardt L. Trout, Martin Karplus posted to smd myosin by barry on 2009-10-30 00:21:59 as along with 1 person okapi
	Steered molecular dynamics and mechanical functions of proteins [My Copy] Current Opinion in Structural Biology, Vol. 11, No. 2. (1 April 2001), pp. 224-230. by B. Isralewitz posted to protein-unfolding single-molecule smd by devinli on 2009-03-07 00:39:39 as along with 4 people and 2 groups Diego_Prada barry ttjoseph LamBras structural_bioinformatics Bioinformatics
	Molecular dynamics study of unbinding of the avidin-biotin complex. [My Copy] Biophysical journal, Vol. 72, No. 4. (April 1997), pp. 1568-1581. by S. Izrailev, S. Stepaniants, M. Balsera, Y. Oono, K. Schulten posted to lipid md pull smd by dimka on 2008-12-26 06:21:54 as
	Extraction of Lipids from Phospholipid Membranes by Steered Molecular Dynamics [My Copy] Journal of Molecular Modeling, Vol. 3, No. 12. (1 December 1997), pp. 473-475. by Sergey Stepaniants, Sergei Izrailev, Klaus Schulten posted to lipid md namd pull smd by dimka on 2008-12-26 05:23:45 as along with 1 person sunnytov
	Transition networks for modeling the kinetics of conformational change in macromolecules [My Copy] Current Opinion in Structural Biology In Theory and simulation / Macromolecular assemblages, Vol. 18, No. 2. (April 2008), pp. 154-162. by Frank Noé, Stefan Fischer posted to review smd by barry to the group McCammon on 2008-07-08 01:23:34 as along with 5 people and 2 groups Diego_Prada aqeel sobolevnrm paulschlesinger toerst structural_bioinformatics baker-group
	Force-Induced Insulin Dimer Dissociation: A Molecular Dynamics Study [My Copy] J. Am. Chem. Soc., Vol. 128, No. 16. (26 April 2006), pp. 5330-5331. by T. Kim, A. Rhee, C. M. Yip posted to afm mechanics silico simulation smd stretch by hsekiguc on 2008-07-07 10:11:23 as
	How Force Might Activate Talin's Vinculin Binding Sites: SMD Reveals a Structural Mechanism. [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (15 February 2008) by Vesa P. Hytönen, Viola Vogel posted to afm simulation smd by hsekiguc on 2008-04-24 16:31:13 as along with 1 person choonpeng
	Single-molecule experiments in vitro and in silico. [My Copy] Science, Vol. 316, No. 5828. (25 May 2007), pp. 1144-1148. by M. Sotomayor, K. Schulten posted to dynamics md silico smd by hsekiguc on 2008-04-24 16:25:23 as along with 5 people and 1 group edws okapi devinli choonpeng skoch3 Koch_Lab
	A kinetic molecular model of the reversible unfolding and refolding of titin under force extension. [My Copy] Biophys J, Vol. 77, No. 3. (September 1999), pp. 1306-1315. by B. Zhang, G. Xu, J. S. Evans posted to smd unfolding unfolding-pathway by kallberg on 2008-04-01 17:26:02 as
	Unfolding of titin immunoglobulin domains by steered molecular dynamics simulation. [My Copy] Biophys J, Vol. 75, No. 2. (August 1998), pp. 662-671. by H. Lu, B. Isralewitz, A. Krammer, V. Vogel, K. Schulten posted to immunoglobin smd unfolding by kallberg on 2008-04-01 17:24:50 as along with 3 people baaden ltrabuco choonpeng
	The key event in force-induced unfolding of Titin's immunoglobulin domains. [My Copy] Biophys J, Vol. 79, No. 1. (July 2000), pp. 51-65. by H. Lu, K. Schulten posted to protein-engeenering smd unfolding by kallberg on 2008-04-01 17:24:06 as
	Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering. [My Copy] Prog Biophys Mol Biol, Vol. 74, No. 1-2. (2000), pp. 63-91. by M. Carrion-Vazquez, A. F. Oberhauser, T. E. Fisher, P. E. Marszalek, H. Li, J. M. Fernandez posted to protein-engeenering smd unfolding by kallberg on 2008-04-01 17:23:18 as along with 1 person devinli
	Practical Solutions for the Diagnosis of Progressing Mental Models [My Copy] Understanding Models for Learning and Instruction (2008), pp. 43-61. by Dirk Ifenthaler posted to concept map mental model smd technology by ifenthaler on 2008-03-09 11:09:43 as
	Relational, structural, and semantic analysis of graphical representations and concept maps [My Copy] Educational Technology Research and Development by Dirk Ifenthaler posted to concept map mental model smd technology by ifenthaler on 2008-03-09 11:04:19 as along with 1 person fbr
	Solvent molecules bridge the mechanical unfolding transition state of a protein. [My Copy] Proc Natl Acad Sci U S A, Vol. 105, No. 9. (4 March 2008), pp. 3185-3190. by L. Dougan, G. Feng, H. Lu, J. M. Fernandez posted to smd solvent unfolding by kallberg on 2008-03-07 19:19:40 as along with 2 people alexknight choonpeng
	Adhesion forces of lipids in a phospholipid membrane studied by molecular dynamics simulations. [My Copy] Biophys J, Vol. 74, No. 2 Pt 1. (February 1998), pp. 931-943. by S. J. Marrink, O. Berger, P. Tieleman, F. Jähnig posted to deltag dppc pull smd by dimka on 2008-02-21 03:12:38 as
	Funding high-throughput data sharing [My Copy] Nat Biotech, Vol. 22, No. 9. (01 September 2004), pp. 1179-1183. by Catherine A. Ball, Gavin Sherlock, Alvis Brazma posted to all arrayexpress cost-benefit databases data-sharing example funding genbank geo motivation policy reuse smd standards tools trends roadmap microarrays by hpiwowar on 2007-11-23 18:02:29 as along with 2 people and 1 group mtaschuk irenas dbk-lab
	Reconstructing Potentials of Mean Force through Time Series Analysis of Steered Molecular Dynamics Simulations [My Copy] Journal of Computational Physics, Vol. 151, No. 1. (1 May 1999), pp. 190-211. by Justin R. Gullingsrud, Rosemary Braun, Klaus Schulten posted to pmf smd by dylan77 on 2007-04-09 19:52:21 as
	Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski's equality [My Copy] The Journal of Chemical Physics, Vol. 124, No. 6. (2006) by Ioan Kosztin, Bogdan Barz, Lorant Janosi posted to diffusion pmf smd by dylan77 on 2007-04-09 19:50:10 as along with 1 person sunnytov
	Exploring gas permeability of cellular membranes and membrane channels with molecular dynamics [My Copy] Journal of Structural Biology In Advances in Molecular Dynamics Simulations, Vol. 157, No. 3. (March 2007), pp. 534-544. by Yi Wang, Jordi Cohen, Walter F. Boron, Klaus Schulten, Emad Tajkhorshid posted to channel gas md permeability smd by dylan77 on 2007-03-24 21:57:20 as
	Energy landscape distortions and the mechanical unfolding of proteins. [My Copy] Biophysical journal. , Vol. 88, No. 5. (May 2005), pp. 3494-3501. by Daniel J. Lacks posted to folding mechanical smd by baaden on 2006-01-09 14:48:50 as along with 1 person ramalldf
	Conformational dynamics of the F1-ATPase beta-subunit: a molecular dynamics study. [My Copy] Biophys J, Vol. 85, No. 3. (September 2003), pp. 1482-1491. by R. A. Böckmann, H. Grubmüller posted to simulations smd snares by baaden on 2006-01-07 10:53:09 as
	Nanoseconds molecular dynamics simulation of primary mechanical energy transfer steps in F1-ATP synthase. [My Copy] Nat Struct Biol, Vol. 9, No. 3. (March 2002), pp. 198-202. by R. A. Böckmann, H. Grubmüller posted to simulations smd snares by baaden on 2006-01-07 10:52:31 as
	Force probe molecular dynamics simulations. [My Copy] Methods Mol Biol, Vol. 305 (2005), pp. 493-515. by H. Grubmüller posted to smd by baaden on 2005-07-31 10:33:23 as along with 2 people and 2 groups barry choonpeng structural_bioinformatics Bioinformatics
	Binding pathway of retinal to bacterio-opsin: a prediction by molecular dynamics simulations. [My Copy] Biophys J, Vol. 73, No. 6. (December 1997), pp. 2972-2979. by B. Isralewitz, S. Izrailev, K. Schulten posted to smd by baaden on 2005-07-31 10:32:26 as along with 1 person ltrabuco
	Unbinding of retinoic acid from its receptor studied by steered molecular dynamics. [My Copy] Biophys J, Vol. 76, No. 1 Pt 1. (January 1999), pp. 188-197. by D. Kosztin, S. Izrailev, K. Schulten posted to smd by baaden on 2005-07-31 10:31:30 as along with 1 person ltrabuco
	Forced unfolding of the fibronectin type III module reveals a tensile molecular recognition switch. [My Copy] Proc Natl Acad Sci U S A, Vol. 96, No. 4. (16 February 1999), pp. 1351-1356. by A. Krammer, H. Lu, B. Isralewitz, K. Schulten, V. Vogel posted to smd by baaden on 2005-07-31 10:31:09 as along with 2 people TheoBioPhys ltrabuco

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review	7
md_simulation	6
protein_dynamics	6
unfolding	5
md	4
dynamics	3
protein_structure	3
pull	3
single-molecule	3
afm	2
concept	2
dynamic	2
force	2
in-silico	2
lipid	2
map	2
mental	2
model	2
molecular	2
pmf	2
protein-engeenering	2
silico	2
simulation	2
simulations	2
snares	2
spectroscopy	2
technology	2
all	1
arrayexpress	1
channel	1
cost-benefit	1
data-sharing	1
databases	1
deltag	1
diffusion	1
dppc	1
example	1
folding	1
funding	1
gas	1
genbank	1
geo	1
immunoglobin	1
mechanical	1
mechanics	1
microarrays	1
motivation	1
myosin	1
namd	1
permeability	1
policy	1
protein-unfolding	1
reuse	1
roadmap	1
solvent	1
standards	1
stretch	1
tools	1
trends	1
unfolding-pathway	1

Tag smd [27 articles] Export

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