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Tag snp [713 articles]

Recent papers classified by the tag snp.
  • SNP-SNP interactions in breast cancer susceptibility.
    BMC cancer, Vol. 6 (2006)
    by VU Onay, L Briollais, JA Knight, E Shi, Y Wang, S Wells, H Li, I Rajendram, IL Andrulis, H Ozcelik
    posted to susceptibility snp interaction cancer breast by Zephyrus on 2008-10-05 03:17:47 as ** along with 1 person and 1 group ramensky Breast Cancer Reading Club
  • notes SNPs3D: Candidate gene and SNP selection for association studies
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Peng Yue, Eugene Melamud, John Moult
    posted to genetics candidate selection snp by Zephyrus on 2008-07-17 03:26:49 as **** along with 3 people and 1 group jyuh massivemayhem cat_worth structural_bioinformatics
  • Letting the genome out of the bottle--will we get our wish?
    N Engl J Med, Vol. 358, No. 2. (10 January 2008), pp. 105-107.
    by DJ Hunter, MJ Khoury, JM Drazen
    posted to genetics snp review perspectives personalized medicine genome analysis by Zephyrus on 2008-10-05 04:21:09 as ** along with 2 people and 1 group jasonbobe PredictER Roswell Cancer Crosstalk
  • From human genetics and genomics to pharmacogenetics and pharmacogenomics: past lessons, future directions.
    Drug metabolism reviews, Vol. 40, No. 2. (2008), pp. 187-224.
    by DW Nebert, G Zhang, ES Vesell
    posted to snp review pharmacogenomics genome cancer-crosstalk cancer by Zephyrus on 2008-10-05 04:26:50 as ** along with 1 person and 1 group PredictER Roswell Cancer Crosstalk
  • Integrated detection and population-genetic analysis of SNPs and copy number variation.
    Nature genetics (7 September 2008)
    by Steven A A McCarroll, Finny G G Kuruvilla, Joshua M M Korn, Simon Cawley, James Nemesh, Alec Wysoker, Michael H H Shapero, Paul I W I de Bakker, Julian B B Maller, Andrew Kirby, Amanda L L Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J J Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W W Jones, Rich Rava, Mark J J Daly, Stacey B B Gabriel, David Altshuler
    posted to snp gwas detection cnv cancer-crosstalk by Zephyrus on 2008-10-04 08:43:10 as ** along with 10 people and 1 group caseybrown rsantana psique jbsaltz Ema misonneh djkt daed rdiaz jyuh Roswell Cancer Crosstalk
  • Common variants on chromosome 5p12 confer susceptibility to estrogen receptor–positive breast cancer
    Nature Genetics, Vol. 40, No. 6. (27 April 2008), pp. 703-706.
    by Simon N Stacey, Andrei Manolescu, Patrick Sulem, Steinunn Thorlacius, Sigurjon A Gudjonsson, Gudbjörn F Jonsson, Margret Jakobsdottir, Jon T Bergthorsson, Julius Gudmundsson, Katja K Aben, Luc J Strobbe, Dorine W Swinkels, Anton KC van Engelenburg, Brian E Henderson, Laurence N Kolonel, Loic Le Marchand, Esther Millastre, Raquel Andres, Berta Saez, Julio Lambea, Javier Godino, Eduardo Polo, Alejandro Tres, Simone Picelli, Johanna Rantala, Sara Margolin, Thorvaldur Jonsson, Helgi Sigurdsson, Thora Jonsdottir, Jon Hrafnkelsson, Jakob Johannsson, Thorarinn Sveinsson, Gardar Myrdal, Hlynur N Grimsson, Steinunn G Sveinsdottir, Kristin Alexiusdottir, Jona Saemundsdottir, Asgeir Sigurdsson, Jelena Kostic, Larus Gudmundsson, Kristleifur Kristjansson, Gisli Masson, James D Fackenthal, Clement Adebamowo, Temidayo Ogundiran, Olufunmilayo I Olopade, Christopher A Haiman, Annika Lindblom, Jose I Mayordomo, Lambertus A Kiemeney, Jeffrey R Gulcher, Thorunn Rafnar, Unnur Thorsteinsdottir, Oskar T Johannsson, Augustine Kong, Kari Stefansson
    posted to susceptibility snp receptor genetics estrogen apoptosis by Zephyrus on 2008-10-05 20:48:54 as ** along with 2 people jfr srp33
  • notes New handles on genomic structural variation.
    Nature genetics, Vol. 40, No. 10. (October 2008)
    posted to variation snp review perspectives genomics cnv by Zephyrus on 2008-10-06 02:43:19 as **
  • Allelic association and disease mapping.
    Brief Bioinform, Vol. 2, No. 4. (December 2001), pp. 375-387.
    by S Ennis, N Maniatis, A Collins
    posted to disease mapping snp by Yumyai on 2008-04-14 19:55:31 as *** along with 1 group Bioinformatics
  • Deleterious SNP prediction: be mindful of your training data!
    Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 664-672.
    by Care, A Matthew, Needham, J Chris, Bulpitt, J Andrew, Westhead, R David
    posted to data mining snp by Yumyai on 2008-04-14 09:00:26 as ** along with 3 people and 2 groups marcius penka happy_manatee BioinfoCIPF SGU-CIPF
  • Age-related macular degeneration is associated with an unstable ARMS2 (LOC387715) mRNA.
    Nature genetics (30 May 2008)
    by Lars G G Fritsche, Thomas Loenhardt, Andreas Janssen, Sheila A A Fisher, Andrea Rivera, Claudia N N Keilhauer, Bernhard H F H Weber
    posted to degeneration htra1 macular snp by ykaminoh on 2008-06-24 20:23:59 as **
  • Geography and genography: Prediction of continental origin using randomly selected single nucleotide polymorphisms
    BMC Genomics, Vol. 8 (10 March 2007), 68.
    by Dominic J Allocco, Qing Song, Gary H Gibbons, Marco F Ramoni, Isaac S Kohane
    posted to genography geography snp by yife on 2007-11-06 02:06:02 as ** along with 2 people fmacciardi pradiptaray
  • Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments
    Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4417-4423.
    by David Benovoy, Tony Kwan, Jacek Majewski
    posted to snp microarray exon csh affymetrix by waszak on 2008-10-07 22:40:50 as ** along with 3 people jfr GeeSharpMinor caseybrown
  • Copy Number Variation Detection via High-Density SNP Genotyping
    Cold Spring Harbor Protocols, Vol. 2008, No. 7. (1 June 2008), pdb.top46.
    by Kai Wang, Maja Bucan
    posted to cnv genotyping snp by waszak on 2008-07-19 22:21:28 as **
  • Genome-Wide Detection of Polymorphisms at Nucleotide Resolution with a Single DNA Microarray
    Science, Vol. 311, No. 5769. (31 March 2006), pp. 1932-1936.
    by David Gresham, Douglas M Ruderfer, Stephen C Pratt, Joseph Schacherer, Maitreya J Dunham, David Botstein, Leonid Kruglyak
    posted to snp by vesper on 2007-12-07 19:01:31 as **** along with 8 people and 3 groups stevanspringer ccots RMGraze dchughes gandhih nirfriedman Billemann djkt FAB-lab G4ID Genetics-of-Gambling
  • Genotype, haplotype and copy-number variation in worldwide human populations
    Nature, Vol. 451, No. 7181. (21 February 2008), pp. 998-1003.
    by Mattias Jakobsson, Sonja W Scholz, Paul Scheet, Raphael J Gibbs, Jenna M Vanliere, Hon-Chung Fung, Zachary A Szpiech, James H Degnan, Kai Wang, Rita Guerreiro, Jose M Bras, Jennifer C Schymick, Dena G Hernandez, Bryan J Traynor, Javier Simon-Sanchez, Mar Matarin, Angela Britton, Joyce van de Leemput, Ian Rafferty, Maja Bucan, Howard M Cann, John A Hardy, Noah A Rosenberg, Andrew B Singleton
    posted to genetics snp by thomaskelder on 2008-02-26 10:26:49 as ** along with 8 people and 2 groups Zephyrus djkt ramensky mailund Archaeogenetics jo_davies jyuh frohike Roswell Cancer Crosstalk Fasting, food and evolution
  • Toward genome-wide SNP genotyping.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by AC Syvänen
    posted to genomique snp by textoris on 2005-06-27 19:16:45 as ** along with 2 people BioGeek euphorium
  • A genome-wide scalable SNP genotyping assay using microarray technology
    Nature Genetics, Vol. 37, No. 5. (17 April 2005), pp. 549-554.
    by Kevin L Gunderson, Frank J Steemers, Grace Lee, Leo G Mendoza, Mark S Chee
    posted to genomique snp by textoris on 2005-06-28 08:35:10 as ** along with 1 person pcahan1
  • Genome-wide association studies: theoretical and practical concerns
    Nature Reviews Genetics, Vol. 6, No. 2. (01 February 2005), pp. 109-118.
    by William YS Wang, Bryan J Barratt, David G Clayton, John A Todd
    posted to snp by tabu on 2006-01-17 09:01:53 as ** along with 5 people and 1 group oilcan pcahan1 indigoviolet joepickrell massivemayhem EisenLab
  • High-throughput SNP genotyping on universal bead arrays.
    Mutat Res, Vol. 573, No. 1-2. (3 June 2005), pp. 70-82.
    by R Shen, JB Fan, D Campbell, W Chang, J Chen, D Doucet, J Yeakley, M Bibikova, E Wickham Garcia, C McBride, F Steemers, F Garcia, BG Kermani, K Gunderson, A Oliphant
    posted to application snp universal_microarrays by stsaft on 2007-03-27 05:46:21 as **
  • The next generation of microarray research: applications in evolutionary and ecological genomics
    Heredity, Vol. aop, No. current.
    by SH Shiu, JO Borevitz,
    posted to microarrays r21 review sfp snp by stsaft on 2008-06-11 00:24:27 as **
  • Calibrating the Performance of SNP Arrays for Whole-Genome Association Studies
    PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000109.
    by Ke Hao, Eric E Schadt, John D Storey
    posted to affy arrays association snp by Stew on 2008-07-07 08:45:06 as **** along with 4 people brianb caseybrown balicea jyuh
  • Genomic scans for selective sweeps using SNP data.
    Genome Res, Vol. 15, No. 11. (November 2005), pp. 1566-1575.
    by R Nielsen, S Williamson, Y Kim, MJ Hubisz, AG Clark, C Bustamante
    posted to genome selection snp by stevanspringer on 2006-02-21 21:52:24 as ** along with 4 people and 3 groups balajis ashandanj ramensky dmc Bioinformatics FAB-lab Durbin group
  • Linkage disequilibrium sharing and haplotype-tagged SNP portability between populations
    PNAS, Vol. 103, No. 5. (31 January 2006), pp. 1418-1421.
    by Wei Huang, Yungang He, Haifeng Wang, Ying Wang, Yangfan Liu, Yi Wang, Xun Chu, Ying Wang, Liang Xu, Yayun Shen, Xiaoyan Xiong, Hui Li, Bo Wen, Ji Qian, Wentao Yuan, Chenhui Zhang, Yi Wang, Hongquan Jiang, Guoping Zhao, Zhu Chen, Li Jin
    posted to linkage snp by stevanspringer on 2006-02-11 23:01:00 as ** along with 1 group FAB-lab
  • Human SNPs Reveal No Evidence of Frequent Positive Selection
    Mol Biol Evol, Vol. 22, No. 12. (1 December 2005), pp. 2504-2507.
    by Liqing Zhang, Wen-Hsiung Li
    posted to genome selection snp by stevanspringer on 2005-11-11 23:26:45 as ** along with 1 group FAB-lab
  • Natural selection of protein structural and functional properties: a SNP perspective
    Genome Biology, Vol. 9, No. 4. (2008)
    by Jinfeng Liu, Yan Zhang, Xingye Lei, Zemin Zhang
    posted to molecular_evolution natural_selection polymorphism snp by stajich on 2008-04-09 00:01:16 as ** along with 4 people and 1 group operon fernan ramensky dandaman Berkeley Mycology
  • Resolving Individuals Contributing Trace Amounts of DNA to Highly Complex Mixtures Using High-Density SNP Genotyping Microarrays
    PLoS Genet, Vol. 4, No. 8. (2008), e1000167.
    by Nils Homer, Szabolcs Szelinger, Margot Redman, David Duggan, Waibhav Tembe, Jill Muehling, John V Pearson, Dietrich A Stephan, Stanley F Nelson, David W Craig
    posted to snp gwas dna anonymity by sometwo on 2008-09-10 13:46:11 as ** along with 5 people chrisamiller jasonbobe djkt rs fpattyn
  • Immobilization of Protein Molecules onto Homogeneous and Mixed Carboxylate-Terminated Self-Assembled Monolayers
    Langmuir, Vol. 13, No. 24. (26 November 1997), pp. 6485-6490.
    by N Patel, MC Davies, M Hartshorne, RJ Heaton, CJ Roberts, SJB Tendler, PM Williams
    posted to 1 3 ausams protein_binding snp by sjanusz on 2007-08-14 12:48:33 as ****
  • Error detection in SNP data by considering the likelihood of recombinational history implied by three-site combinations.
    Bioinformatics (17 May 2007)
    by Donna M M Toleno, Peter L L Morrell, Michael T T Clegg
    posted to snp by shigepong on 2007-05-20 15:26:15 as *****
  • Quality scores and SNP detection in sequencing-by-synthesis systems
    Genome Res. (22 January 2008), gr.070227.107.
    by William Brockman, Pablo Alvarez, Sarah Young, Manuel Garber, Georgia Giannoukos, William L Lee, Carsten Russ, Eric S Lander, Chad Nusbaum, David B Jaffe
    posted to detection newseq rna-seq snp by sharpton on 2008-05-19 19:10:25 as ** along with 6 people cap1 caseybrown dbensasson bpb Neeperando GustavoLacerda
  • Consensus generation and variant detection by Celera Assembler.
    Bioinformatics (Oxford, England), Vol. 24, No. 8. (15 April 2008), pp. 1035-1040.
    by G Denisov, B Walenz, AL Halpern, J Miller, N Axelrod, S Levy, G Sutton
    posted to detection genome snp by semrich on 2008-07-05 21:50:18 as ***
  • Genotyping of single-nucleotide polymorphisms by high-resolution melting of small amplicons.
    Clinical chemistry, Vol. 50, No. 7. (July 2004), pp. 1156-1164.
    by M Liew, R Pryor, R Palais, C Meadows, M Erali, E Lyon, C Wittwer
    posted to genotyping pcr polymorphism snp technology by sebastien_vigneau on 2008-06-18 03:38:34 as ***
  • Determination of allele frequency in pooled DNA: comparison of three PCR-based methods.
    BioTechniques, Vol. 39, No. 6. (December 2005), pp. 853-858.
    by S Wilkening, K Hemminki, RK Thirumaran, JL Bermejo, S Bonn, A Försti, R Kumar
    posted to genotyping pcr polymorphism qpcr snp technology by sebastien_vigneau on 2008-06-18 15:36:53 as read
  • Screening of human SNP database identifies recoding sites of A-to-I RNA editing.
    RNA (New York, N.Y.) (4 September 2008)
    by Willemijn M M Gommans, Nicholas E E Tatalias, Christina P P Sie, Dylan Dupuis, Nicholas Vendetti, Lauren Smith, Rikhi Kaushal, Stefan Maas
    posted to snp sequencing rna editing by sebastien_vigneau on 2008-09-07 19:34:23 as **
  • SNPbox: web-based high-throughput primer design from gene to genome.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by S Weckx, P De Rijk, C Van Broeckhoven, J Del-Favero
    posted to high-throughput pcr polymorphism sequencing snp software by sebastien_vigneau on 2008-06-06 03:14:19 as read along with 2 people jyuh balicea
  • RTPrimerDB: the real-time PCR primer and probe database.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 122-123.
    by F Pattyn, F Speleman, A De Paepe, J Vandesompele
    posted to pcr qpcr snp software by sebastien_vigneau on 2008-04-03 00:22:22 as read along with 1 person ecattell
  • High-throughput SNP genotyping by single-tube PCR with Tm-shift primers.
    BioTechniques, Vol. 39, No. 6. (December 2005), pp. 885-893.
    by J Wang, K Chuang, M Ahluwalia, S Patel, N Umblas, D Mirel, R Higuchi, S Germer
    posted to pcr polymorphism snp technology by sebastien_vigneau on 2008-06-18 03:40:10 as **
  • Single-tube genotyping without oligonucleotide probes.
    Genome research, Vol. 9, No. 1. (January 1999), pp. 72-78.
    by S Germer, R Higuchi
    posted to genotyping pcr polymorphism snp technology by sebastien_vigneau on 2008-06-18 03:42:37 as **
  • The PCR suite.
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 591-593.
    by MJ van Baren, P Heutink
    posted to pcr primer sequencing snp software by sebastien_vigneau on 2008-06-06 03:23:43 as read along with 1 person jyuh
  • WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations
    BMC Genomics, Vol. 8 (14 August 2007), 275.
    by Pongsakorn Wangkumhang, Kridsadakorn Chaichoompu, Chumpol Ngamphiw, Uttapong Ruangrit, Juntima Chanprasert, Anunchai Assawamakin, Sissades Tongsima
    posted to bioinformatics pcr snp software by sebastien_vigneau on 2008-04-03 00:16:27 as read along with 1 person jyuh
  • Development of a real-time polymerase chain reaction-based method for the measurement of relative allelic expression and identification of CYP2A13 alleles with decreased expression in human lung.
    The Journal of pharmacology and experimental therapeutics, Vol. 311, No. 1. (October 2004), pp. 373-381.
    by X Zhang, M Caggana, TL Cutler, X Ding
    posted to cyp2a13 genotyping pcr polymorphism snp technology by sebastien_vigneau on 2008-06-18 03:37:38 as ***
  • Melting curve analysis of SNPs (McSNP): a gel-free and inexpensive approach for SNP genotyping.
    BioTechniques, Vol. 30, No. 2. (February 2001)
    by JM Akey, D Sosnoski, E Parra, S Dios, K Hiester, B Su, C Bonilla, L Jin, MD Shriver
    posted to genotyping pcr polymorphism snp technology by sebastien_vigneau on 2008-06-18 03:36:02 as ****
  • A New Approach for Using Genome Scans to Detect Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 5, No. 7. (19 June 2007)
    by Kun Tang, Kevin R R Thornton, Mark Stoneking
    posted to evolution snp by sebastien_vigneau on 2007-07-12 09:05:50 as * along with 4 people and 3 groups brant dchughes madhadron xingxu EisenLab G4ID Genetics-of-Gambling
  • SNPbox: a modular software package for large-scale primer design.
    Bioinformatics, Vol. 21, No. 3. (1 February 2005), pp. 385-387.
    by S Weckx, P De Rijk, C Van Broeckhoven, J Del-Favero
    posted to high-throughput pcr polymorphism sequencing snp software by sebastien_vigneau on 2008-06-06 03:05:28 as **** along with 1 person jyuh
  • Single nucleotide polymorphism genotyping using allele-specific PCR and fluorescence melting curves.
    BioTechniques, Vol. 34, No. 5. (May 2003), pp. 1068-1072.
    by AC Papp, JK Pinsonneault, G Cooke, W Sadée
    posted to pcr polymorphism snp technology by sebastien_vigneau on 2008-06-18 03:41:49 as ***
  • An efficient procedure for genotyping single nucleotide polymorphisms.
    Nucleic acids research, Vol. 29, No. 17. (1 September 2001)
    by S Ye, S Dhillon, X Ke, AR Collins, IN Day
    posted to bioinformatics pcr snp software by sebastien_vigneau on 2008-04-03 02:17:43 as **
  • SNP Cutter: a comprehensive tool for SNP PCR-RFLP assay design.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by R Zhang, Z Zhu, H Zhu, T Nguyen, F Yao, K Xia, D Liang, C Liu
    posted to bioinformatics rflp snp software by sebastien_vigneau on 2008-04-03 00:04:15 as read along with 2 people jyuh nstimson
  • Mapping the Genetic Architecture of Gene Expression in Human Liver.
    PLoS biology, Vol. 6, No. 5. (6 May 2008)
    by Eric E E Schadt, Cliona Molony, Eugene Chudin, Ke Hao, Xia Yang, Pek Y Y Lum, Andrew Kasarskis, Bin Zhang, Susanna Wang, Christine Suver, Jun Zhu, Joshua Millstein, Solveig Sieberts, John Lamb, Debraj Guhathakurta, Jonathan Derry, John D D Storey, Iliana Avila-Campillo, Mark J J Kruger, Jason M M Johnson, Carol A A Rohl, Atila van Nas, Margarete Mehrabian, Thomas A A Drake, Aldons J J Lusis, Ryan C C Smith, F Peter P Guengerich, Stephen C C Strom, Erin Schuetz, Thomas H H Rushmore, Roger Ulrich
    posted to epigenetics gene_expression liver snp by Schmidtc on 2008-05-09 18:18:34 as ** along with 9 people semrich ddunbar caseybrown vplagnol ptrobajo Jonesy jyuh inesdesantiago hdopazo
  • Simultaneous Analysis of All SNPs in Genome-Wide and Re-Sequencing Association Studies
    PLoS Genet, Vol. 4, No. 7. (25 July 2008), e1000130.
    by Clive J Hoggart, John C Whittaker, Maria De Iorio, David J Balding
    posted to snp by Schmidtc on 2008-08-29 14:01:15 as ** along with 3 people djkt Stew jyuh
  • Biodiversity of 20 chicken breeds assessed by SNPs located in gene regions.
    Cytogenet Genome Res, Vol. 117, No. 1-4. (2007), pp. 319-326.
    by T Twito, S Weigend, S Blum, Z Granevitze, MW Feldman, R Perl-Treves, U Lavi, J Hillel
    posted to bioinformatics cnv snp by Schmidtc on 2008-06-04 02:04:53 as ** along with 1 group Bioinformatics
  • SNP-specific extraction of haplotype-resolved targeted genomic regions
    Nucl. Acids Res. (8 July 2008), gkn345.
    by Johannes Dapprich, Deborah Ferriola, Eleni E Magira, Mark Kunkel, Dimitri Monos
    posted to haplotype snp by sbozdag on 2008-07-08 18:59:14 as **
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