Tag solexa [at least 200 articles] Export

Recent papers classified by the tag solexa.

	Exome sequencing identifies the cause of a mendelian disorder [My Copy] Nature Genetics In Nat Genet, Vol. advance online publication (13 November 2009) by Sarah B. Ng, Kati J. Buckingham, Choli Lee, et al.Abigail W. Bigham, Holly K. Tabor, Karin M. Dent, Chad D. Huff, Paul T. Shannon, Ethylin W. Jabs, Deborah A. Nickerson, Jay Shendure, Michael J. Bamshad posted to solexa resequencing illumina exome enrichment disease capture agilent by n00c on 2009-12-04 17:51:46 as along with 6 people cajunsushi pst seb1 daforerog Peiyong psique
	De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R94. by Scott DiGuistini, Nancy Liao, Darren Platt, et al.Gordon Robertson, Michael Seidel, Simon Chan, T. Roderick Docking, Inanc Birol, Robert Holt, Martin Hirst, Elaine Mardis, Marco Marra, Richard Hamelin, Jorg Bohlmann, Colette Breuil, Steven Jones posted to solexa sequencing sanger illumina genome de-novo assembly 454 by n00c on 2009-12-03 16:11:02 as along with 11 people and 2 groups orzenil GustavoLacerda sotacam gillianturgeon natstreet druvus jamselem sujaikumar kiekyon ppgardne stajich Journal picks Mycology
	Microarray-based multicycle-enrichment of genomic subsets for targeted next-generation sequencing [My Copy] Genome Research In Genome Research, Vol. 19, No. 9. (28 September 2009), pp. 1616-1621. by Daniel Summerer, Haiguo Wu, Bettina Haase, et al.Yang Cheng, Nadine Schracke, Cord F. StÃ¤hler, Mark S. Chee, Peer F. StÃ¤hler, Markus Beier posted to solexa sequencing microarray illumina enrichment capture by n00c on 2009-12-03 15:47:20 as along with 5 people xingxu torfinnnome guhjy jbhiatt natstreet
	Microdroplet-based PCR enrichment for large-scale targeted sequencing [My Copy] Nature Biotechnology In Nat Biotech, Vol. 27, No. 11. (01 November 2009), pp. 1025-1031. by Ryan Tewhey, Jason B. Warner, Masakazu Nakano, et al.Brian Libby, Martina Medkova, Patricia H. David, Steve K. Kotsopoulos, Michael L. Samuels, J. Brian Hutchison, Jonathan W. Larson, Eric J. Topol, Michael P. Weiner, Olivier Harismendy, Jeff Olson, Darren R. Link, Kelly A. Frazer posted to solexa roche illumina enrichment capture 454 by n00c on 2009-12-03 13:53:04 as along with 3 people and 2 groups chvlyl torfinnnome qayub Reunions Biblio Spectro-IAB Journal picks
	De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae [My Copy] Genome research In Genome Research, Vol. 19, No. 2. (17 February 2009), pp. 294-305. by Josephine A. Reinhardt, David A. Baltrus, Marc T. Nishimura, William R. Jeck, Corbin D. Jones, Jeffery L. Dangl posted to vcake solexa soap illumina assembly 454 by n00c on 2009-12-03 13:32:23 as along with 14 people and 2 groups michaelbarton pachorip ThomasDOtto robsyme orzenil AaronDarling druvus dakelley Huub_odc usagi-kirin abizar acn jbhiatt hpaces SIMR bioinformatics Bioinformatics
	Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 374. by Andreia Amaral, Hendrik J. Megens, Hindrik Kerstens, et al.Henri Heuven, Bert Dibbits, Richard Crooijmans, Johan den Dunnen, Martien Groenen posted to solexa snp-discovery snp mapping illumina error-model coverage by n00c on 2009-12-03 13:17:30 as along with 3 people natstreet jsatkosk danmaclean
	Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing [My Copy] Plant Biotechnology Journal, Vol. 7, No. 4. (2009), pp. 334-346. by Martin Trick, Yan Long, Jinling Meng, Ian Bancroft posted to transcriptome solexa snp-discovery snp-calling snp maqview maq illumina by n00c on 2009-12-03 13:12:16 as along with 3 people and 1 group natstreet ArtemPankin druvus Khavkin's lab
	Model-Based Quality Assessment and Base-Calling for Second-Generation Sequencing Data [My Copy] Biometrics, Vol. 9999, No. 9999. (2009) by Héctor C. Bravo, Rafael A. Irizarry posted to solexa sequencing quality illumina error-model base-calling 2nd-generation by n00c on 2009-12-03 01:13:57 as along with 1 person humburg
	The new paradigm of flow cell sequencing [My Copy] Genome Research, Vol. 18, No. 6. (1 June 2008), pp. 839-846. by Robert A. Holt, Steven J. M. Jones posted to solexa sequencing review illumina helicos error-rate 454 by n00c on 2009-12-02 18:06:07 as along with 18 people and 1 group mtagaya thegoose2 idoerg treangen druvus kintoki tmmurali stajich reyez lp2 GustavoLacerda tharris balicea caseybrown dchughes hpaces serdarbozdag jfr Mycology
	Evaluation of next generation sequencing platforms for population targeted sequencing studies. [My Copy] Genome biology, Vol. 10, No. 3. (2009), R32. by Olivier Harismendy, Pauline Ng, Robert Strausberg, et al.Xiaoyun Wang, Timothy Stockwell, Karen Beeson, Nicholas Schork, Sarah Murray, Eric Topol, Samuel Levy, Kelly Frazer posted to solid solexa sanger next_generation_sequencing illumina 454 by dutilh on 2009-12-01 11:06:51 as along with 27 people and 2 groups humburg heliopais jfr hzoltan dbensasson GustavoLacerda adijr agbiotec jgill darian jandot n00c jonilaserson maren inesdesantiago mlog ppgardne kiekyon michaelbarton idoerg stajich skembel giovanni druvus lwaldron djkt natstreet Journal picks Mycology
	Detection of Genomic Variation by Selection of a 9 Mb DNA Region and High Throughput Sequencing [My Copy] PLoS ONE, Vol. 4, No. 8. (17 August 2009), e6659. by Sergey I. Nikolaev, Christian Iseli, Andrew J. Sharp, et al.Daniel Robyr, Jacques Rougemont, Corinne Gehrig, Laurent Farinelli, Stylianos E. Antonarakis posted to variation solexa snp-calling rolexa resequencing illumina genome enrichment capture by n00c on 2009-11-30 21:05:35 as along with 2 people torfinnnome thegoose
	Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing [My Copy] Genome Research, Vol. 19, No. 7. (4 July 2009), pp. 1309-1315. by Wei Qu, Shin-ichi Hashimoto, Shinichi Morishita posted to solexa next_generation computational_tools by mpizbioinfo on 2009-11-27 09:40:47 as along with 9 people heliopais druvus n00c megraw nlapalu dakelley djkt operon natstreet
	Improved protocols for the illumina genome analyzer sequencing system. [My Copy] Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.], Vol. Chapter 18 (July 2009) by Michael A. Quail, Harold Swerdlow, Daniel J. Turner posted to solexa protocol next-gen-seq illumina cluster-density by rschulz on 2009-11-25 09:29:14 as along with 2 people and 1 group manduca katholt Journal picks
	Massively Parallel Sequencing: The Next Big Thing in Genetic Medicine [My Copy] Vol. 85, No. 2. (14 August 2009), pp. 142-154. by Tracy Tucker, Marco Marra, Jan M. Friedman posted to solexa sequencing sanger review 454 by chriscole on 2009-11-22 10:39:20 as along with 2 people n00c daforerog
	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (23 June 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted to swift solexa high-throughput-sequencing by heliopais on 2009-11-19 13:59:01 as along with 21 people and 4 groups n00c hzoltan dakelley sotacam lh49 djkt rtogawa cassj dswan torfinnnome rschulz natstreet druvus jasontsai jmeppley ghattem nuin polivares aprasad niallhaslam idoerg Bioinformatics BergmanLab SIMR bioinformatics Journal picks
	TileQC: A system for tile-based quality control of Solexa data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 May 2008), 250. by Peter Dolan, Dee Denver posted to solexa quality_control_system high-throughput-sequencing by heliopais on 2009-11-19 13:55:39 as along with 7 people n00c magusina neils reyez mdimon slevy03 caseybrown
	Fast and accurate short read alignment with Burrows-Wheeler transform [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to solexa alignment by maren on 2009-11-06 23:21:09 as along with 34 people and 4 groups agbiotec lianping hzoltan cthachuk bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon ghattem n00c danmaclean ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	The theory of discovering rare variants via DNA sequencing [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 485. by Michael Wendl, Richard Wilson posted to solexa snp-calling short-read-mapping cnv by jasontsai on 2009-11-04 14:07:22 as along with 4 people jsatkosk merpublic n00c druvus
	TIGERA: A New Tool for Illumina Gene Expression Reads Analysis [My Copy] Bioinformatics, 2009 Ohio Collaborative Conference, Vol. 0 (2009), pp. 37-41. by Xiaodong Bai, Parwinder S. Grewal posted to solexa software high-throughput-sequencing by heliopais on 2009-11-03 14:56:48 as along with 1 person hzoltan
	The diploid genome sequence of an Asian individual. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 60-65. by Jun Wang, Wei Wang, Ruiqiang Li, et al.Yingrui Li, Geng Tian, Laurie Goodman, Wei Fan, Junqing Zhang, Jun Li, Juanbin Zhang, Yiran Guo, Binxiao Feng, Heng Li, Yao Lu, Xiaodong Fang, Huiqing Liang, Zhenglin Du, Dong Li, Yiqing Zhao, Yujie Hu, Zhenzhen Yang, Hancheng Zheng, Ines Hellmann, Michael Inouye, John Pool, Xin Yi, Jing Zhao, Jinjie Duan, Yan Zhou, Junjie Qin, Lijia Ma, Guoqing Li, Zhentao Yang, Guojie Zhang, Bin Yang, Chang Yu, Fang Liang, Wenjie Li, Shaochuan Li, Dawei Li, Peixiang Ni, Jue Ruan, Qibin Li, Hongmei Zhu, Dongyuan Liu, Zhike Lu, Ning Li, Guangwu Guo, Jianguo Zhang, Jia Ye, Lin Fang, Qin Hao, Quan Chen, Yu Liang, Yeyang Su, A. San, Cuo Ping, Shuang Yang, Fang Chen, Li Li, Ke Zhou, Hongkun Zheng, Yuanyuan Ren, Ling Yang, Yang Gao, Guohua Yang, Zhuo Li, Xiaoli Feng, Karsten Kristiansen, Gane K. Wong, Rasmus Nielsen, Richard Durbin, Lars Bolund, Xiuqing Zhang, Songgang Li, Huanming Yang, Jian Wang posted to tpgp solexa soap short-read sequence individual-human-genome illumina genome asian by n00c on 2009-10-28 20:16:15 as along with 15 people rshe fenghezi jonilaserson kmdaily daforerog jessopher dakelley vmsr psique GustavoLacerda reyez guhjy caseybrown pkonings djkt
	Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences [My Copy] Journal of Computational Biology (22 September 2009), 090922085727012. by Kouichi Kimura, Yutaka Suzuki, Sumio Sugano, Asako Koike posted to solexa short_read jcb illumina alignment by seb1 on 2009-10-23 19:25:10 as along with 3 people justinhjohnson n00c druvus
	Characterizing natural variation using next-generation sequencing technologies [My Copy] Trends in Genetics, Vol. 25, No. 10. (02 October 2009), pp. 463-471. by Yoav Gilad, Jonathan K. Pritchard, Kevin Thornton posted to variation solid solexa roche review mosaik illumina false-positive comparison abi 454 by n00c on 2009-10-19 16:04:09 as along with 5 people and 1 group operon jwfoley skembel djkt natstreet iSEEM
	ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads [My Copy] Genome Biology, Vol. 10, No. 10. (1 October 2009), R103. by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe posted to solexa next-gen_sequencing assembly by jgill on 2009-10-15 17:42:33 as along with 10 people and 1 group djkt n00c azazello dakelley GustavoLacerda ramonvidal justinhjohnson stajich druvus neils Mycology
	Substantial biases in ultra-short read data sets from high-throughput DNA sequencing [My Copy] Nucl. Acids Res., Vol. 36, No. 16. (1 September 2008), e105. by Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer posted to solexa sequencing noise error_rates by jonilaserson on 2009-10-13 21:20:36 as along with 19 people and 1 group heliopais hzoltan n00c druvus orzenil burak woodson8 sameersoi humburg poschm polivares Huub_odc usagi-kirin inesdesantiago jfr natstreet dakelley caseybrown GustavoLacerda microbiology_nijmegen
	Quantitative miRNA expression analysis: Comparing microarrays with next-generation sequencing [My Copy] RNA, Vol. 15, No. 11. (10 November 2009), pp. 2028-2034. by Hanni Willenbrock, Jesper Salomon, Rolf SÃ¸kilde, et al.Kim B. Barken, Thomas N. Hansen, Finn C. Nielsen, SÃ¸ren MÃ¸ller, Thomas Litman posted to synthetic-sample solexa microrna_microarray microrna high_throughput_sequencing by heliopais to the group microRNA on 2009-10-12 11:49:05 as along with 7 people giovenko toni_marco fishtank debasis ealloza daforerog pengchy
	Next-generation tag sequencing for cancer gene expression profiling [My Copy] Genome Research, Vol. 19, No. 10. (10 October 2009), pp. 1825-1835. by A. Sorana Morrissy, Ryan D. Morin, Allen Delaney, et al.Thomas Zeng, Helen McDonald, Steven Jones, Yongjun Zhao, Martin Hirst, Marco A. Marra posted to tag solexa profiling illumina gene expression by Stew to the group Bioinformatics - CRUK on 2009-10-08 14:18:17 as along with 4 people hzoltan torfinnnome guhjy fpattyn
	Sequencing of natural strains of Arabidopsis thaliana with short reads. [My Copy] Genome research, Vol. 18, No. 12. (29 December 2008), pp. 2024-2033. by Stephan Ossowski, Korbinian Schneeberger, Richard M. Clark, Christa Lanz, Norman Warthmann, Detlef Weigel posted to solexa snp-calling short-read shore sequencing quality pipeline maq illumina error-model arabidopsis by n00c on 2009-10-07 18:05:08 as along with 11 people and 2 groups seninp APRegier sameersoi dandaman jasontsai stajich xwbcn natstreet druvus GustavoLacerda semrich Mycology Notre Dame Bioinformatics
	galign: A Tool for Rapid Genome Polymorphism Discovery [My Copy] PLoS ONE, Vol. 4, No. 9. (25 September 2009), e7188. by Shai Shaham posted to solexa alignment by maren on 2009-10-01 03:17:40 as along with 7 people and 1 group scmelton natstreet Benedikt_Zimmermann n00c torfinnnome druvus stajich Mycology
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to transcriptome solexa rna-seq illumina by n00c on 2009-09-29 16:29:47 as along with 21 people ongenetics hzoltan torfinnnome ericrpaquet jonilaserson ThomasDOtto giovanni frohike fenghezi jfr zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	Comparison of next generation sequencing technologies for transcriptome characterization. [My Copy] BMC genomics, Vol. 10, No. 1. (1 August 2009), 347. by P. Kerr Wall, Jim Leebens-Mack, André S. Chanderbali, et al.Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn P. Tomsho, Yi Hu, John E. Carlson, Hong Ma, Stephan C. Schuster, Douglas E. Soltis, Pamela S. Soltis, Naomi Altman, Claude W. dePamphilis posted to transcriptome technology solid solexa rna-seq illumina comparison abi 454 by n00c on 2009-09-29 16:17:26 as along with 19 people and 4 groups hzoltan daveGerrard daforerog feeldead debasis jgill mqbphcw3 sotacam GustavoLacerda adamjamesreid dswan mlog gwallau ewilban1 ThomasDOtto jasontsai polivares natstreet druvus Journal picks Bioinformatics LabDros BergmanLab
	Accurate whole human genome sequencing using reversible terminator chemistry. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 53-59. by David R. Bentley, Shankar Balasubramanian, Harold P. Swerdlow, et al.Geoffrey P. Smith, John Milton, Clive G. Brown, Kevin P. Hall, Dirk J. Evers, Colin L. Barnes, Helen R. Bignell, Jonathan M. Boutell, Jason Bryant, Richard J. Carter, R. Keira Cheetham, Anthony J. Cox, Darren J. Ellis, Michael R. Flatbush, Niall A. Gormley, Sean J. Humphray, Leslie J. Irving, Mirian S. Karbelashvili, Scott M. Kirk, Heng Li, Xiaohai Liu, Klaus S. Maisinger, Lisa J. Murray, Bojan Obradovic, Tobias Ost, Michael L. Parkinson, Mark R. Pratt, Isabelle M. J. Rasolonjatovo, Mark T. Reed, Roberto Rigatti, Chiara Rodighiero, Mark T. Ross, Andrea Sabot, Subramanian V. Sankar, Aylwyn Scally, Gary P. Schroth, Mark E. Smith, Vincent P. Smith, Anastassia Spiridou, Peta E. Torrance, Svilen S. Tzonev, Eric H. Vermaas, Klaudia Walter, Xiaolin Wu, Lu Zhang, Mohammed D. Alam, Carole Anastasi, Ify C. Aniebo, David M. D. Bailey, Iain R. Bancarz, Saibal Banerjee, Selena G. Barbour, Primo A. Baybayan, Vincent A. Benoit, Kevin F. Benson, Claire Bevis, Phillip J. Black, Asha Boodhun, Joe S. Brennan, John A. Bridgham, Rob C. Brown, Andrew A. Brown, Dale H. Buermann, Abass A. Bundu, James C. Burrows, Nigel P. Carter, Nestor Castillo, Maria Chiara, Simon Chang, R. Neil Cooley, Natasha R. Crake, Olubunmi O. Dada, Konstantinos D. Diakoumakos, Belen Dominguez-Fernandez, David J. Earnshaw, Ugonna C. Egbujor, David W. Elmore, Sergey S. Etchin, Mark R. Ewan, Milan Fedurco, Louise J. Fraser, Karin V. Fuentes Fajardo, W. Scott Furey, David George, Kimberley J. Gietzen, Colin P. Goddard, George S. Golda, Philip A. Granieri, David E. Green, David L. Gustafson, Nancy F. Hansen, Kevin Harnish, Christian D. Haudenschild, Narinder I. Heyer, Matthew M. Hims, Johnny T. Ho, Adrian M. Horgan, Katya Hoschler, Steve Hurwitz, Denis V. Ivanov, Maria Q. Johnson, Terena James, T. A. Huw Jones, Gyoung-Dong Kang, Tzvetana H. Kerelska, Alan D. Kersey, Irina Khrebtukova, Alex P. Kindwall, Zoya Kingsbury, Paula I. Kokko-Gonzales, Anil Kumar, Marc A. Laurent, Cynthia T. Lawley, Sarah E. Lee, Xavier Lee, Arnold K. Liao, Jennifer A. Loch, Mitch Lok, Shujun Luo, Radhika M. Mammen, John W. Martin, Patrick G. McCauley, Paul McNitt, Parul Mehta, Keith W. Moon, Joe W. Mullens, Taksina Newington, Zemin Ning, Bee L. Ng, Sonia M. Novo, Michael J. O'Neill, Mark A. Osborne, Andrew Osnowski, Omead Ostadan, Lambros L. Paraschos, Lea Pickering, Andrew C. Pike, Alger C. Pike, D. Chris Pinkard, Daniel P. Pliskin, Joe Podhasky, Victor J. Quijano, Come Raczy, Vicki H. Rae, Stephen R. Rawlings, Ana C. Rodriguez, Phyllida M. Roe, John Rogers, Maria C. Rogert Bacigalupo, Nikolai Romanov, Anthony Romieu, Rithy K. Roth, Natalie J. Rourke, Silke T. Ruediger, Eli Rusman, Raquel M. Sanches-Kuiper, Martin R. Schenker, Josefina M. Seoane, Richard J. Shaw, Mitch K. Shiver, Steven W. Short, Ning L. Sizto, Johannes P. Sluis, Melanie A. Smith, Jean Ernest Sohna Sohna, Eric J. Spence, Kim Stevens, Neil Sutton, Lukasz Szajkowski, Carolyn L. Tregidgo, Gerardo Turcatti, Stephanie vandeVondele, Yuli Verhovsky, Selene M. Virk, Suzanne Wakelin, Gregory C. Walcott, Jingwen Wang, Graham J. Worsley, Juying Yan, Ling Yau, Mike Zuerlein, Jane Rogers, James C. Mullikin, Matthew E. Hurles, Nick J. McCooke, John S. West, Frank L. Oaks, Peter L. Lundberg, David Klenerman, Richard Durbin, Anthony J. Smith posted to yoruba tpgp solexa resequencing maq individual-human-genome illumina genome eland by n00c on 2009-09-28 15:30:03 as along with 29 people and 1 group hzoltan rshe pst gbenson giovenko clearbluespring xingxu dna austin jessopher daforerog vmsr jfr azazello nuin usagi-kirin Archaeogenetics malcook psique tsherig jbhiatt pengchy reyez jmcq inesdesantiago ojabado caseybrown pkonings djkt SIMR bioinformatics
	Next-Generation Sequencing Methods: Impact of Sequencing Accuracy on SNP Discovery [My Copy] Single Nucleotide Polymorphisms (2009), pp. 95-111. by Eugene Y. Chan posted to solexa snp-discovery snp resequencing repeats methods illumina helicos by n00c on 2009-09-26 01:49:02 as
	Next-Generation DNA Sequencing Methods [My Copy] Annual Review of Genomics and Human Genetics, Vol. 9, No. 1. (19 June 2008), pp. 387-402. by Elaine R. Mardis posted to solid solexa sequencing illumina abi 454 by n00c on 2009-09-25 17:02:13 as along with 15 people rshe heliopais daforerog stsaft natstreet druvus Vincent_Rouilly Annab floatingpoint yupu LorraineThompson giovenko aheilbut reyez guhjy
	Allele-specific expression assays using Solexa. [My Copy] BMC genomics, Vol. 10, No. 1. (9 September 2009), 422. by Bradley J. Main, Ryan D. Bickel, Lauren M. McIntyre, Rita M. Graze, Peter P. Calabrese, Sergey V. Nuzhdin posted to solexa sequencing genome-wide expression allelic allele-specific-expression allele-specific by sebastien_vigneau on 2009-09-24 23:48:13 as along with 2 people manduca natstreet
	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted to solexa gene_expr by maren on 2009-09-23 00:00:44 as along with 48 people and 3 groups AndersI zufar cthachuk hzoltan jwfoley heliopais debasis mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda CPI UU SIMR bioinformatics Mycology
	RazerS--fast read mapping with sensitivity control. [My Copy] Genome research, Vol. 19, No. 9. (10 September 2009), pp. 1646-1654. by David Weese, Anne-Katrin K. Emde, Tobias Rausch, Andreas Döring, Knut Reinert posted to read-mapping solexa by heliopais on 2009-09-22 16:45:45 as along with 6 people and 1 group torfinnnome jandot n00c reyez druvus natstreet Journal picks
	CloudBurst: highly sensitive read mapping with MapReduce [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1363-1369. by Michael C. Schatz posted to read-mapping solexa by heliopais on 2009-09-22 16:44:43 as along with 33 people and 2 groups joshdsullivan cthachuk hzoltan jfr walshtp idonaldson orzenil dakelley bozdagd agbiotec jandot guhjy n00c cymacs semrich nuin operon AlexBateman fgibson rschulz dswan mitko djkt humburg jmeppley coela vagoskar svenrahmann natstreet brianb Neeperando druvus neils KCL & UCL Bioinformatics Bioinformatics
	PASS: a program to align short sequences [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 967-968. by Davide Campagna, Alessandro Albiero, Alessandra Bilardi, et al.Elisa Caniato, Claudio Forcato, Svetlin Manavski, Nicola Vitulo, Giorgio Valle posted to read-mapping solexa by heliopais on 2009-09-22 16:40:41 as along with 20 people and 1 group Julien_Fayolle cthachuk hzoltan seb1 bozdagd adijr darian maren n00c nuin skembel cassj Neeperando helminth_lab rschulz guhjy natstreet druvus renatomilani WanderingAengus iSEEM
	TagDust--a program to eliminate artifacts from next generation sequencing data [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2839-2840. by Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub posted to solexa next-gen_sequencing data_qc by jgill on 2009-09-21 22:20:47 as along with 20 people and 1 group orzenil hzoltan chvlyl operon kshameer djkt rtogawa seb1 idonaldson nuin debasis GeeSharpMinor sotacam torfinnnome walshtp heliopais jandot n00c rschulz druvus Journal picks
	Relative power and sample size analysis on gene expression profiling data. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 439. by M. van Iterson, P. A. 't Hoen, P. Pedotti, et al.G. J. Hooiveld, J. T. den Dunnen, G. J. van Ommen, J. M. Boer, R. X. Menezes posted to solexa methods illumina gene expression experimental_design by mkiyer on 2009-09-20 01:33:08 as along with 6 people and 1 group manduca dswan Stew fenghezi rdiaz barriot Bioinformatics - CRUK
	BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing [My Copy] Genome Research, Vol. 19, No. 10. (6 October 2009), pp. 1884-1895. by Wei-Chun Kao, Kristian Stevens, Yun S. Song posted to tool solexa software short-read sequencing illumina bustard bayesian bayescall base-calling algorithm by n00c on 2009-09-13 07:34:18 as along with 13 people and 2 groups heliopais dakelley lp2 megraw rdiaz torfinnnome djkt farhat druvus polivares stajich fpattyn jbhiatt BergmanLab Mycology
	Rapid whole-genome mutational profiling using next-generation sequencing technologies. [My Copy] Genome research, Vol. 18, No. 10. (4 October 2008), pp. 1638-1642. by Douglas R. Smith, Aaron R. Quinlan, Heather E. Peckham, et al.Kathryn Makowsky, Wei Tao, Betty Woolf, Lei Shen, William F. Donahue, Nadeem Tusneem, Michael P. Stromberg, Donald A. Stewart, Lu Zhang, Swati S. Ranade, Jason B. Warner, Clarence C. Lee, Brittney E. Coleman, Zheng Zhang, Stephen F. McLaughlin, Joel A. Malek, Jon M. Sorenson, Alan P. Blanchard, Jarrod Chapman, David Hillman, Feng Chen, Daniel S. Rokhsar, Kevin J. McKernan, Thomas W. Jeffries, Gabor T. Marth, Paul M. Richardson posted to solid solexa snp-discovery snp-calling resequencing pyrobayes mutations mosaik illumina gigabayes coverage abi 454 by n00c on 2009-09-03 16:10:17 as along with 7 people robsyme druvus skoddet yupu jfr jmcq GeeSharpMinor
	SHREC: a short-read error correction method [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2157-2163. by Jan Schroder, Heiko Schroder, Simon J. Puglisi, Ranjan Sinha, Bertil Schmidt posted to solexa error correction by katholt on 2009-08-25 12:45:08 as along with 13 people and 1 group heliopais adthrasher dakelley skembel thegoose sotacam djkt rtogawa torfinnnome natstreet druvus n00c jmeppley Journal picks
	Improved base calling for the Illumina Genome Analyzer using machine learning strategies [My Copy] Genome Biology, Vol. 10, No. 8. (14 August 2009), R83. by Martin Kircher, Udo Stenzel, Janet Kelso posted to solexa machine-learning illumina ibis base-calling by n00c on 2009-08-18 00:44:49 as along with 7 people and 1 group seb1 djkt reyez fpattyn danmaclean ppgardne druvus Journal picks
	PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2514-2521. by Yangho Chen, Tade Souaiaia, Ting Chen posted to solexa next_generation mapping by druvus on 2009-08-13 07:26:16 as along with 10 people and 1 group Julien_Fayolle heliopais darian dswan operon fishtank polivares n00c torfinnnome natstreet BergmanLab
	Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2878-2881. by Bas E. Dutilh, Martijn A. Huynen, Marc Strous posted to icorn mapping solexa by ThomasDOtto on 2009-08-06 15:50:33 as along with 7 people and 1 group dakelley druvus kinestetika jasontsai skembel sharpton jmeppley iSEEM
	Probabilistic base calling of Solexa sequencing data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (13 October 2008), 431. by Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef posted to solexa by heliopais on 2009-07-29 12:24:00 as along with 16 people and 1 group orzenil n00c dakelley jfr usagi-kirin magusina malcook natstreet druvus iris42 abizar caseybrown reyez pengchy waszak nuin SIMR bioinformatics
	Alta-Cyclic: a self-optimizing base caller for next-generation sequencing [My Copy] Nat Meth, Vol. 5, No. 8. (06 July 2008), pp. 679-682. by Yaniv Erlich, Partha P. Mitra, Melissa delaBastide, W. Richard McCombie, Gregory J. Hannon posted to alta-cyclic base-calling illumina short-read software solexa tool by n00c on 2009-07-27 23:34:18 as along with 6 people guhjy dakelley druvus natstreet caseybrown gdb
	PIQA: pipeline for Illumina G1 genome analyzer data quality assessment [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2438-2439. by A. Martinez-Alcantara, E. Ballesteros, C. Feng, et al.M. Rojas, H. Koshinsky, V. Y. Fofanov, P. Havlak, Y. Fofanov posted to illumina pipeline piqa quality short-read solexa by n00c on 2009-07-17 14:18:04 as along with 2 people djkt guhjy
	Comparative profiling of the transcriptional response to infection in two species of Drosophila by short-read cDNA sequencing. [My Copy] BMC genomics, Vol. 10, No. 1. (07 June 2009), 259. by Timothy B. Sackton, Andrew G. Clark posted to nextgenerationsequencing solexa transcription by avilella to the group Journal picks on 2009-07-16 10:39:30 as along with 2 people n00c fsm

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sequencing	149
illumina	129
genome-analyzer	75
analyzer	43
454	39
assembly	39
bioinformatics	24
genome	16
methods	16
software	16
solid	14
alignment	12
snp	12
resequencing	11
review	11
ht_sequencing	10
shortread	10
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expression	8
human	8
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mirna	8
read-mapping	8
short-read	8
transcriptome	8
2009	7
base-calling	6
chipseq	6
chromatin	6
gene_expression	6
maq	6
methylation	6
microarray	6
rna-seq	6
sanger	6
abi	5
arabidopsis	5
chip-seq	5
deep-seq	5
genomics	5
high-throughput-sequencing	5
quality	5
rna	5
rnaseq	5
snp-calling	5
statistics	5
variation	5
annotation	4
capture	4
cnv	4
cpg	4
dna-methylation	4
enrichment	4
epigenetics	4
genome-wide	4
next-gen-seq	4
next-gen_sequencing	4
next_gen_sequencing	4
nextgensequencing	4
pipeline	4
smallrna	4
snp-discovery	4
technology	4
tool	4
transcription	4
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bacteria	3
bisulfite	3
dataset	3
denovo	3
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gene	3
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mouse	3
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next_generation_sequencing	3
nextgenerationsequencing	3
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swift	3
transcriptomics	3
wga	3
2008	2
binding_site	2
emulsion	2
h4k20me1	2
heliscope	2
insulator	2
metagenomics	2
microrna_microarray	2
muscle	2
parameter_estimation	2
reads	2
rolexa	2
sequence	2
sirna	2

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