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Tag splicing [311 articles]

Recent papers classified by the tag splicing.
  • Heritability of alternative splicing in the human genome
    Genome Res., Vol. 17, No. 8. (1 August 2007), pp. 1210-1218.
    by Tony Kwan, David Benovoy, Christel Dias, Scott Gurd, David Serre, Harry Zuzan, Tyson A Clark, Anthony Schweitzer, Michelle K Staples, Hui Wang, John E Blume, Thomas J Hudson, Rob Sladek, Jacek Majewski
    posted to hapmap splicing by xingxu on 2007-08-07 16:37:25 as ** along with 8 people and 3 groups dchughes msomel caseybrown nicholso jo_davies ramensky popgen jyuh Bioinformatics G4ID Genetics-of-Gambling
  • The spanish connection: transcription and mRNA processing get even closer.
    Cell, Vol. 120, No. 2. (28 January 2005), pp. 163-166.
    by M Ares, NJ Proudfoot
    posted to cap connection coupling mrna polya processing splicing transcription by xico on 2006-02-18 19:53:11 as **** along with 1 group WetBiology
  • CDK13/CDC2L5 interacts with L-type cyclins and regulates alternative splicing.
    Biochem Biophys Res Commun, Vol. 354, No. 3. (16 March 2007), pp. 735-740.
    by HH Chen, YH Wong, AM Geneviere, MJ Fann
    posted to alternative cdc2l5 cdk13 ched cycl cyclinl mrna norvegicus pitaivre rattus splicing sub-family by xico on 2007-04-08 23:35:05 as read along with 1 group WetBiology
  • notes CDC2L5, a Cdk-like kinase with RS domain, interacts with the ASF/SF2-associated protein p32 and affects splicing in vivo.
    J Cell Biochem (23 May 2006)
    by Yasmine Even, Sandrine Durieux, Marie-Line L Escande, Jean Claude C Lozano, Gérard Peaucellier, Dominique Weil, Anne-Marie M Genevière
    posted to asf2sf2-associated cdc2l5 cdk cdk-like p32 protein rs-domain splicing by xico on 2006-06-07 15:13:23 as read along with 1 person and 1 group gloria WetBiology
  • Mechanisms of alternative pre-messenger RNA splicing.
    Annu Rev Biochem, Vol. 72 (2003), pp. 291-336.
    by DL Black
    posted to alternative pre-mrna review splicing sr-motif by xico on 2006-06-20 16:20:34 as **** along with 4 people and 1 group jknabe Cortel maryee mimulus_99 WetBiology
  • A new subfamily of high molecular mass CDC2-related kinases with PITAI/VRE motifs.
    Biochem Biophys Res Commun, Vol. 279, No. 3. (29 December 2000), pp. 832-837.
    by F Marquès, Et Al
    posted to 5 cdc2-like cdc2-related cdc2l5 cdk cdk13 cell ctd cycl cycle cyclinl development early kinase motif mrna novel pitaivre rnapolii sea splicing sr subfamily synthesis urchin by xico on 2007-05-18 01:46:26 as read along with 1 group WetBiology
  • CDK13: A NEW POTENTIAL HIV-1 INHIBITORY FACTOR REGULATING VIRAL mRNA SPLICING
    J. Virol. (14 May 2008), JVI.02543-07.
    by Reem Berro, Caitlin Pedati, Kylene Kehn-Hall, Weilin Wu, Zachary Klase, Yasmine Even, Anne-Marie Geneviere, Tatiana Ammosova, Sergei Nekhai, Fatah Kashanchi
    posted to aids asfsf2 cdc2l5 cdc2-related cdk13 ched cycl cyclin cyclin-l factor hiv kinase mrna restriction sea splicing tat transactivation urchin virus by xico on 2008-07-08 15:30:39 as ** along with 1 person mblwhoi
  • Exploring functional relationships between components of the gene expression machinery.
    Nat Struct Mol Biol, Vol. 12, No. 2. (February 2005), pp. 175-182.
    by T Burckin, R Nagel, Y Mandel-Gutfreund, L Shiue, TA Clark, JL Chong, TH Chang, S Squazzo, G Hartzog, M Ares
    posted to elongation expression gene machinery maturation mrna review splicing transcription by xico on 2007-06-06 16:28:43 as ** along with 2 people and 1 group balajis opheliav WetBiology
  • notes CDK11 complexes promote pre-mRNA splicing.
    J Biol Chem, Vol. 278, No. 10. (7 March 2003), pp. 8623-8629.
    by D Hu, A Mayeda, JH Trembley, JM Lahti, VJ Kidd
    posted to cdk cdk11 exotic pre-mrna splicing by xico on 2006-02-17 16:08:17 as read along with 1 group WetBiology
  • CELL SIGNALLING AND THE CONTROL OF PRE-mRNA SPLICING
    Nat Rev Mol Cell Biol, Vol. 5, No. 9. (2004), pp. 727-738.
    by Chanseok Shin, James L Manley
    posted to cell control mrna review signalling splicing by xico on 2006-11-01 23:16:08 as **** along with 1 person and 1 group gloria WetBiology
  • Understanding alternative splicing: towards a cellular code
    Nature Reviews Molecular Cell Biology, Vol. 6, No. 5. (01 May 2005), pp. 386-398.
    by Arianne J Matlin, Francis Clark, Christopher WJ Smith
    posted to alternative code review rna small splicing sr by xico on 2007-03-11 01:20:54 as *** along with 2 people and 2 groups Cortel kaspermunch Bioinformatics WetBiology
  • notes Identification and characterization of the CDK12/cyclin L1 complex involved in alternative splicing regulation.
    Mol Cell Biol, Vol. 26, No. 7. (April 2006), pp. 2736-2745.
    by HH Chen, YC Wang, MJ Fann
    posted to alternative cdk12 crkrs cyclin l1 regulation splicing by xico on 2006-06-09 18:08:02 as **** along with 1 group WetBiology
  • SKAR Links Pre-mRNA Splicing to mTOR/S6K1-Mediated Enhanced Translation Efficiency of Spliced mRNAs
    Cell, Vol. 133, No. 2. (18 April 2008), pp. 303-313.
    by Xiaoju M Ma, Sang-Oh Yoon, Celeste J Richardson, Kristina Jülich, John Blenis
    posted to coupling efficiency mrna mtors6k1 pre-mrna rapamycin skar splicing translation by xico on 2008-07-03 02:31:49 as **
  • U2AF binding selects for the high conservation of the C. elegans 3' splice site
    RNA, Vol. 11, No. 3. (1 March 2005), pp. 248-253.
    by Courtney Hollins, Diego A Zorio, Margaret Macmorris, Thomas Blumenthal
    posted to splicing by xiaobeizhao on 2006-12-14 04:17:48 as ** along with 1 person and 1 group tharris C. elegans / WormBase
  • Functional analysis of a C. elegans trans-splice acceptor.
    Nucleic Acids Res, Vol. 21, No. 4. (25 February 1993), pp. 913-919.
    by R Conrad, RF Liou, T Blumenthal
    posted to splicing by xiaobeizhao on 2006-12-14 04:04:11 as ** along with 1 person and 1 group tharris C. elegans / WormBase
  • Analysis of the role of Caenorhabditis elegans GC-AG introns in regulated splicing.
    Nucleic Acids Res, Vol. 30, No. 15. (1 August 2002), pp. 3360-3367.
    by T Farrer, AB Roller, WJ Kent, AM Zahler
    posted to splicing by xiaobeizhao on 2006-12-14 03:35:30 as ** along with 1 person and 1 group tharris C. elegans / WormBase
  • The implications of alternative splicing in the ENCODE protein complement.
    Proc Natl Acad Sci U S A, Vol. 104, No. 13. (27 March 2007), pp. 5495-5500.
    by ML Tress, PL Martelli, A Frankish, GA Reeves, JJ Wesselink, C Yeats, PL Olason, M Albrecht, H Hegyi, A Giorgetti, D Raimondo, J Lagarde, RA Laskowski, G López, MI Sadowski, JD Watson, P Fariselli, I Rossi, A Nagy, W Kai, Z Størling, M Orsini, Y Assenov, H Blankenburg, C Huthmacher, F Ramírez, A Schlicker, F Denoeud, P Jones, S Kerrien, S Orchard, SE Antonarakis, A Reymond, E Birney, S Brunak, R Casadio, R Guigo, J Harrow, H Hermjakob, DT Jones, T Lengauer, C A Orengo, L Patthy, JM Thornton, A Tramontano, A Valencia
    posted to bologna08 splicing structure by winterschlaefer on 2008-02-18 09:45:18 as ** along with 4 people and 4 groups stevanspringer Cortel dchughes antonkratz Bioinformatics FAB-lab G4ID Genetics-of-Gambling
  • The protein kinase DYRK1A phosphorylates the splicing factor SF3b1/SAP155 at Thr434, a novel in vivo phosphorylation site.
    BMC Biochem, Vol. 7 (2006)
    by K de Graaf, H Czajkowska, S Rottmann, LC Packman, R Lilischkis, B Lüscher, W Becker
    posted to dyrk1a sf3b1 splicing by WBecker on 2006-06-14 08:43:08 as **
  • DYRK1A accumulates in splicing speckles through a novel targeting signal and induces speckle disassembly.
    J Cell Sci, Vol. 116, No. Pt 15. (1 August 2003), pp. 3099-3107.
    by M Alvarez, X Estivill, S de la Luna
    posted to dyrk1a speckle splicing by WBecker on 2006-11-17 11:44:26 as read
  • Characterization of cyclin L2, a novel cyclin with an arginine/serine-rich domain: phosphorylation by DYRK1A and colocalization with splicing factors.
    J Biol Chem, Vol. 279, No. 6. (6 February 2004), pp. 4612-4624.
    by K de Graaf, P Hekerman, O Spelten, A Herrmann, LC Packman, K Büssow, G Müller-Newen, W Becker
    posted to cyclin dyrk1a kinase splicing substrate by WBecker on 2006-07-04 12:36:16 as read
  • Manipulation of alternative splicing by a newly developed inhibitor of Clks.
    J Biol Chem, Vol. 279, No. 23. (4 June 2004), pp. 24246-24254.
    by M Muraki, B Ohkawara, T Hosoya, H Onogi, J Koizumi, T Koizumi, K Sumi, J Yomoda, MV Murray, H Kimura, K Furuichi, H Shibuya, AR Krainer, M Suzuki, M Hagiwara
    posted to clk inhibitor splicing by WBecker on 2006-06-14 08:35:12 as ***
  • Alternative splicing in colon, bladder, and prostate cancer identified by exon-array analysis
    Mol Cell Proteomics (18 March 2008), M700590-MCP200.
    by Kasper Thorsen, Karina D Sorensen, Anne S Brems-Eskildsen, Charlotte Modin, Mette Gaustadnes, Anne-Mette K Hein, Mogens Kruhoffer, Soren Laurberg, Michael Borre, Kai Wang, Soren Brunak, Adrian R Krainer, Niels Torring, Lars Dyrskjot, Claus L Andersen, Torben F Orntoft
    posted to affymetrix cancer hugene splicing by waszak on 2008-04-10 16:54:10 as ** along with 2 people jo_davies jfr
  • Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
    BMC Genomics, Vol. 7 (27 December 2006), 325.
    by Paul J Gardina, Tyson A Clark, Brian Shimada, Michelle K Staples, Qing Yang, James Veitch, Anthony Schweitzer, Tarif Awad, Charles Sugnet, Suzanne Dee, Christopher Davies, Alan Williams, Yaron Turpaz
    posted to affymetrix cancer colon exon splicing by waszak on 2008-01-30 14:04:56 as ** along with 2 people jfr srp33
  • Highly efficient protein trans-splicing by a naturally split DnaE intein from Nostoc punctiforme.
    FEBS Lett (24 February 2006)
    by Hideo Iwai, Sara Züger, Jennifer Jin, Pui-Hang H Tam
    posted to intein nostoc punctiforme splicing by viktor21614 on 2007-07-30 20:38:50 as ** along with 1 person Terkko
  • Recent advances in the application of expressed protein ligation to protein engineering
    Current Opinion in Biotechnology, Vol. 13, No. 4. (1 August 2002), pp. 297-303.
    by Roseanne M Hofmann, Tom W Muir
    posted to intein splicing by viktor21614 on 2007-07-30 20:36:50 as ** along with 1 person leelarcombe
  • Development of a Tandem Protein Trans-Splicing System Based on Native and Engineered Split Inteins
    J. Am. Chem. Soc., Vol. 127, No. 17. (4 May 2005), pp. 6198-6206.
    by J Shi, TW Muir
    posted to intein splicing by viktor21614 on 2007-07-30 20:35:50 as **
  • Characterization of a Naturally Occurring Trans-Splicing Intein from Synechocystis sp. PCC6803
    Biochemistry, Vol. 40, No. 5. (6 February 2001), pp. 1393-1402.
    by DD Martin, MQ Xu, TC Evans
    posted to intein splicing by viktor21614 on 2007-07-30 20:37:36 as **
  • A computational investigation of kinetoplastid trans-splicing.
    Genome Biol, Vol. 6, No. 11. (2005)
    by S Gopal, S Awadalla, T Gaasterland, GA Cross
    posted to splicing trans-splicing by ujh on 2005-11-11 20:41:27 as **
  • Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes.
    Genome Res (12 December 2005)
    by Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-Ichi I Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano
    posted to alternative pap promoter splicing by ujh on 2005-12-23 09:43:19 as read along with 7 people textoris troels_marstrand olympos nosada17 antonkratz bethsabrina yoanjacquemin
  • Automatic detection of exonic splicing enhancers (ESEs) using SVMs
    BMC Bioinformatics, Vol. 9 (10 September 2008), 369.
    by Britta Mersch, Alexander Gepperth, Sandor Suhai, Agnes Hotz-Wagenblatt
    posted to splicing splice exon alternative by trevinor on 2008-09-11 23:00:21 as **
  • Quantitative microarray profiling provides evidence against widespread coupling of alternative splicing with nonsense-mediated mRNA decay to control gene expression
    Genes Dev., Vol. 20, No. 2. (15 January 2006), pp. 153-158.
    by Qun Pan, Arneet L Saltzman, Yoon K Kim, Christine Misquitta, Ofer Shai, Lynne E Maquat, Brendan J Frey, Benjamin J Blencowe
    posted to microarray splicing by tabu on 2006-02-06 16:55:24 as ** along with 3 people eoghanharr ccots bertelsen
  • The evolution of spliceosomal introns: patterns, puzzles and progress
    Nature Reviews Genetics, Vol. 7, No. 3., pp. 211-221.
    by Scott W Roy, Walter Gilbert
    posted to evolution splicing by tabu on 2006-02-22 12:42:44 as ** along with 4 people zhlei eoghanharr stajich byy
  • Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform.
    Mol Cell, Vol. 16, No. 6. (22 December 2004), pp. 929-941.
    by Q Pan, O Shai, C Misquitta, W Zhang, AL Saltzman, N Mohammad, T Babak, H Siu, TR Hughes, QD Morris, BJ Frey, BJ Blencowe
    posted to splicing by tabu on 2006-01-17 08:38:17 as ** along with 1 person Cortel
  • Cell type and culture condition-dependent alternative splicing in human breast cancer cells revealed by splicing-sensitive microarrays.
    Cancer Res, Vol. 66, No. 4. (15 February 2006), pp. 1990-1999.
    by C Li, M Kato, L Shiue, JE Shively, M Ares, RJ Lin
    posted to breast cancer microarray splicing by tabu on 2006-02-24 00:20:49 as ** along with 1 person jfr
  • The effects of multiple features of alternatively spliced exons on the K(A)/K(S) ratio test.
    BMC Bioinformatics, Vol. 7 (2006)
    by FC Chen, TJ Chuang
    posted to alternative exons kaks splicing test by Stew on 2007-09-28 23:27:22 as **
  • Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing.
    Genome Res (17 May 2005)
    by Evgeny A A Glazov, Michael Pheasant, Elizabeth A A McGraw, Gill Bejerano, John S S Mattick
    posted to drosophila insect mrna splicing ultraconserved by Stew on 2007-09-19 18:41:01 as **** along with 2 people and 1 group ujh sujaikumar EisenLab
  • Transcript Specificity in Yeast Pre-mRNA Splicing Revealed by Mutations in Core Spliceosomal Components
    PLoS Biology, Vol. 5, No. 4. (1 April 2007), e90.
    by Jeffrey A Pleiss, Gregg B Whitworth, Megan Bergkessel, Christine Guthrie
    posted to intron mrna saccharomyces splicing by stajich on 2007-04-24 18:05:20 as **
  • A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional.
    Mol Cell, Vol. 24, No. 6. (28 December 2006), pp. 917-929.
    by DF Tardiff, SA Lacadie, M Rosbash
    posted to splicing saccharomyces intron by stajich on 2007-01-18 00:56:20 as **
  • Differential Recruitment of the Splicing Machinery during Transcription Predicts Genome-Wide Patterns of mRNA Splicing
    Molecular Cell, Vol. 24, No. 6. (28 December 2006), pp. 903-915.
    by Michael J Moore, Elissa M Schwartzfarb, Pamela[no-Break Silver, Michael C Yu
    posted to splicing saccharomyces intron by stajich on 2007-01-18 00:57:24 as **
  • Large-scale comparative analysis of splicing signals and their corresponding splicing factors in eukaryotes.
    Genome Res, Vol. 18, No. 1. (January 2008), pp. 88-103.
    by S Schwartz, J Silva, D Burstein, T Pupko, E Eyras, G Ast
    posted to eukaryota fungi splicing sr by stajich on 2008-04-10 22:26:19 as ** along with 4 people and 2 groups tharris dchughes gjuggler GustavoLacerda C. elegans / WormBase Berkeley Mycology
  • Riboswitch control of gene expression in plants by splicing and alternative 3' end processing of mRNAs.
    The Plant cell, Vol. 19, No. 11. (November 2007), pp. 3437-3450.
    by A Wachter, M Tunc-Ozdemir, BC Grove, PJ Green, DK Shintani, RR Breaker
    posted to gene_expression plant riboswitch splicing transcriptional_regulation by stajich on 2008-04-10 05:54:13 as ** along with 1 person and 1 group kengg Berkeley Mycology
  • Translational control of intron splicing in eukaryotes
    Nature, Vol. 451, No. 7176. (17 January 2008), pp. 359-362.
    by Olivier Jaillon, Khaled Bouhouche, Jean-Francois Gout, Jean-Marc Aury, Benjamin Noel, Baptiste Saudemont, Mariusz Nowacki, Vincent Serrano, Betina M Porcel, Beatrice Segurens, Anne Le Mouel, Gersende Lepere, Vincent Schachter, Mireille Betermier, Jean Cohen, Patrick Wincker, Linda Sperling, Laurent Duret, Eric Meyer
    posted to intron intron_evolution splicing transcription translational_control by stajich on 2008-01-16 20:58:12 as ** along with 5 people and 1 group gjuggler mclarenv seitentaisei raistrick zhouyu Berkeley Mycology
  • Positive selection acting on splicing motifs reflects compensatory evolution
    Genome Res. (18 January 2008), gr.070268.107.
    by Shengdong Ke, Xiang H Zhang, Lawrence A Chasin
    posted to motif positive_selection splicing by stajich on 2008-04-10 22:27:19 as ** along with 4 people and 1 group operon bpcusack cjeans gjuggler Berkeley Mycology
  • Exonic splicing enhancers in fission yeast: functional conservation demonstrates an early evolutionary origin
    Genes Dev., Vol. 19, No. 2. (15 January 2005), pp. 242-254.
    by Christopher J Webb, Charles M Romfo, Willem J van Heeckeren, Jo A Wise
    posted to evolution fungal fungi mrna splicing spombe by stajich on 2006-12-08 19:50:10 as **
  • Cis- and trans-splicing of mRNAs mediated by tRNA sequences in eukaryotic cells.
    Proceedings of the National Academy of Sciences of the United States of America (5 May 2008)
    by Gianfranco Di Segni, Serena Gastaldi, Glauco P P Tocchini-Valentini
    posted to mrna splicing transcription trna by stajich on 2008-06-02 03:20:12 as ** along with 3 people and 1 group austin sebastien_vigneau inesdesantiago Berkeley Mycology
  • Intronic microRNA precursors that bypass Drosha processing
    Nature (24 June 2007)
    by Graham J Ruby, Calvin H Jan, David P Bartel
    posted to intron mirna splicing by stajich on 2008-04-05 19:57:50 as ** along with 7 people and 5 groups tharris dpollard gpalidwor andersbj Garamonfok ale tolot27 C. elegans / WormBase Bioinformatics EisenLab microRNA Berkeley Mycology
  • Coevolution of genomic intron number and splice sites
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Manuel Irimia, David Penny, Scott W Roy
    posted to evolution genome_evolution intron splicing by stajich on 2007-05-22 06:27:40 as read along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Coevolution of genomic intron number and splice sites.
    Trends Genet, Vol. 23, No. 7. (July 2007), pp. 321-325.
    by M Irimia, D Penny, SW Roy
    posted to evolution intron splicing by stajich on 2007-11-09 05:42:43 as ** along with 4 people and 1 group dpollard GustavoLacerda Manchester seitentaisei EisenLab
  • Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion.
    Genome Res, Vol. 16, No. 1. (January 2006), pp. 66-77.
    by NL Barbosa-Morais, M Carmo-Fonseca, S Aparício
    posted to splicing gene_family alternative_splicing by stajich on 2007-01-09 17:40:04 as ***
  • Role of SR protein modular domains in alternative splicing specificity in vivo
    Nucl. Acids Res., Vol. 28, No. 24. (15 December 2000), pp. 4822-4831.
    by van der Houven, Kathryn Newton, Gavin R Screaton, Javier F Caceres
    posted to alternative_splicing splicing by stajich on 2008-01-30 23:48:34 as ** along with 1 group Berkeley Mycology
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