Tag splicing [at least 200 articles] Export

Recent papers classified by the tag splicing.

	Pre-mRNA processing reaches back to transcription and ahead to translation. [My Copy] Cell, Vol. 136, No. 4. (20 February 2009), pp. 688-700. by M. J. Moore, N. J. Proudfoot posted to translation transcription splicing rna polyadenylation by aprickett on 2009-11-05 15:04:36 as along with 2 people heliopais rschulz
	A Unique, Consistent Identifier for Alternatively Spliced Transcript Variants [My Copy] PLoS ONE, Vol. 4, No. 10. (28 October 2009), e7631. by Alberto Riva, Graziano Pesole posted to splicing nomenclature identifier alternative by torfinnnome on 2009-11-03 14:34:29 as
	Mutations and alternative splicing of the BRCA1 gene in UK breast/ovarian cancer families. [My Copy] Genes, chromosomes & cancer, Vol. 18, No. 2. (February 1997), pp. 102-110. by C. F. Xu, J. A. Chambers, H. Nicolai, et al.M. A. Brown, Y. Hujeirat, S. Mohammed, S. Hodgson, D. P. Kelsell, N. K. Spurr, D. T. Bishop, E. Solomon posted to splicing disease alternative by gregoryross on 2009-11-03 11:56:46 as
	Patterns of exon-intron architecture variation of genes in eukaryotic genomes. [My Copy] BMC genomics, Vol. 10 (24 January 2009), 47. by Liucun Zhu, Ying Zhang, Wen Zhang, Sihai Yang, Jian-Qun Q. Chen, Dacheng Tian posted to splicing intron gc exon by sebastien_vigneau on 2009-10-29 21:43:37 as along with 2 people bmajoros druvus
	Nucleosome positioning as a determinant of exon recognition [My Copy] Nature Structural & Molecular Biology, Vol. 16, No. 9. (16 August 2009), pp. 996-1001. by Hagen Tilgner, Christoforos Nikolaou, Sonja Althammer, et al.Michael Sammeth, Miguel Beato, Juan Valcarcel, Roderic Guigo posted to splicing nucleosome-positioning nucleosome intron exon by sebastien_vigneau on 2009-10-29 21:43:00 as along with 3 people fenghezi RamuAnandakrishnan aalibes
	Exon sequences at the splice junctions affect splicing fidelity and alternative splicing [My Copy] Proceedings of the National Academy of Sciences (23 October 2009) by Luciana B. Crotti, David S. Horowitz posted to splicing sequencing by giovanni on 2009-10-24 17:41:08 as
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to transcriptome splicing sequencing illumina alternative by torfinnnome on 2009-10-22 15:16:38 as along with 19 people n00c ericrpaquet jonilaserson ThomasDOtto giovanni frohike fenghezi jfr zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	Alternative pre-mRNA splicing switches modulate gene expression in late erythropoiesis. [My Copy] Blood, Vol. 113, No. 14. (2 April 2009), pp. 3363-3370. by Miki L. Yamamoto, Tyson A. Clark, Sherry L. Gee, et al.Jeong-Ah A. Kang, Anthony C. Schweitzer, Amittha Wickrema, John G. Conboy posted to transcripts splicing fidelity alternative_splicing by zxmon21 on 2009-10-20 13:14:41 as
	Optimal spliced alignments of short sequence reads [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Ratsch posted to splicing ngs alignment by GustavoLacerda on 2009-10-14 18:35:54 as along with 12 people and 1 group darshan n00c natstreet druvus lukaswindhager malcook jmcq nmohelli caseybrown cthachuk Ema Neeperando SIMR bioinformatics
	The architectural organization and mechanistic function of group II intron structural elements [My Copy] Current Opinion in Structural Biology, Vol. 8, No. 3. (June 1998), pp. 301-308. by P. Qin posted to splicing review intron groupii domain by lukzky on 2009-10-06 12:43:21 as
	High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity [My Copy] BMC Genetics, Vol. 10, No. 1. (05 October 2009), 63. by Weiyin Zhou, Margaret Calciano, Heather Jordan, et al.Michael Brenner, Seth Johnson, Darong Wu, Lin Lei, Diego Pallares, Pascale Beurdeley, Fabien Rouet, Pritmohinder Gill, Laurent Bracco, Cyril Soucaille, Richard Einstein posted to transcriptome splicing microarray gwsa expression alternative by torfinnnome on 2009-10-06 10:12:48 as
	Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon usage in Drosophila melanogaster. [My Copy] Molecular biology and evolution, Vol. 24, No. 12. (December 2007), pp. 2755-2762. by Tobias Warnecke, Laurence D. Hurst posted to translation splicing codon_usage by bpcusack on 2009-09-28 10:41:11 as
	Are splicing mutations the most frequent cause of hereditary disease? [My Copy] FEBS Letters, Vol. 579, No. 9. (28 March 2005), pp. 1900-1903. by N. Lopezbigas, B. Audit, C. Ouzounis, G. Parra, R. Guigo posted to splicing hereditary_disease bs1015 by chriswillmott on 2009-09-24 20:38:22 as along with 2 people bpcusack daforerog
	Chromatin organization marks exon-intron structure. [My Copy] Nature structural & molecular biology, Vol. 16, No. 9. (16 September 2009), pp. 990-995. by Schraga Schwartz, Eran Meshorer, Gil Ast posted to transcription splicing chromatin by ericrpaquet on 2009-09-10 15:59:02 as along with 4 people sebastien_vigneau inesdesantiago fenghezi ashkelon13
	Nucleosomes are well positioned in exons and carry characteristic histone modifications [My Copy] Genome Research, Vol. 19, No. 10. (18 October 2009), pp. 1732-1741. by Robin Andersson, Stefan Enroth, Alvaro Rada-Iglesias, Claes Wadelius, Jan Komorowski posted to splicing nucleosome histone by cajunsushi on 2009-09-08 18:11:06 as along with 7 people xianjun owhitney lp2 megraw djkt fenghezi inesdesantiago
	Studying alternative splicing regulatory networks through partial correlation analysis [My Copy] Genome Biology, Vol. 10, No. 1. (2009), R3. by Liang Chen, Sika Zheng posted to splicing networks by cajunsushi on 2009-09-04 18:29:32 as along with 3 people lptolik daforerog pengchy
	Changes in alternative splicing of human and mouse genes are accompanied by faster evolution of constitutive exons. [My Copy] Molecular biology and evolution, Vol. 22, No. 11. (1 November 2005), pp. 2198-2208. by Brian P. Cusack, Kenneth H. Wolfe posted to splicing_alternative splicing mutation_rate evolutionary_constraint evolution_rate biased_mutation by biomcgary on 2009-09-02 22:48:33 as along with 1 person and 1 group avilella Ensembl Compara citations
	When gene marriages don't work out: divorce by subfunctionalization. [My Copy] Trends in genetics : TIG, Vol. 23, No. 6. (June 2007), pp. 270-272. by Brian P. Cusack, Kenneth H. Wolfe posted to subfunctionalization splicing_alternative splicing gene_duplication by biomcgary on 2009-09-02 22:46:02 as along with 2 people clearbluespring bpcusack
	Tissue Effect on Genetic Control of Transcript Isoform Variation [My Copy] PLoS Genet, Vol. 5, No. 8. (14 August 2009), e1000608. by Tony Kwan, Elin Grundberg, Vonda Koka, et al.Bing Ge, Kevin C. L. Lam, Christel Dias, Andreas Kindmark, Hans Mallmin, Östen Ljunggren, Fernando Rivadeneira, Karol Estrada, Joyce B. van Meurs, Andre Uitterlinden, Magnus Karlsson, Claes Ohlsson, Dan Mellström, Olle Nilsson, Tomi Pastinen, Jacek Majewski posted to splicing snps expression association by djkt on 2009-08-31 19:31:10 as along with 2 people fenghezi bpcusack
	Multiple gains of spliceosomal introns in a superfamily of vertebrate protease inhibitor genes [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (22 August 2009), 208. by Hermann Ragg, Abhishek Kumar, Katharina Koster, et al.Caterina Bentele, Yunjie Wang, Marc A. Frese, Natalie Prib, Olaf Kruger posted to splicing by ppgardne to the group Journal picks on 2009-08-30 14:05:10 as
	Suppression of Repeat-Mediated Gross Mitochondrial Genome Rearrangements by RecA in the Moss Physcomitrella patens [My Copy] Plant Cell, Vol. 21, No. 4. (1 April 2009), pp. 1182-1194. by Masaki Odahara, Haruko Kuroiwa, Tsuneyoshi Kuroiwa, Yasuhiko Sekine posted to splicing by hagechouchin443 on 2009-08-23 13:55:19 as along with 1 person dandaman
	SNPSplicer: systematic analysis of SNP-dependent splicing in genotyped cDNAs. [My Copy] Human mutation, Vol. 27, No. 11. (November 2006), pp. 1129-1134. by Abdou ElSharawy, Carl Manaster, Markus Teuber, et al.Philip Rosenstiel, Ruta Kwiatkowski, Klaus Huse, Matthias Platzer, Albert Becker, Peter Nürnberg, Stefan Schreiber, Jochen Hampe posted to summer2009writeup splicing snp by myzhang on 2009-08-21 06:37:37 as along with 1 person guhjy
	Probe-level estimation improves the detection of differential splicing in Affymetrix exon array studies [My Copy] Genome Biology, Vol. 10, No. 7. (2009), R77. by Essi Laajala, Tero Aittokallio, Riitta Lahesmaa, Laura Elo posted to splicing probe microarray level bioinformatics by ericrpaquet on 2009-08-14 14:47:16 as along with 3 people lwaldron djkt neils
	Ovarian development in Apis mellifera worker bees [My Copy] Entomologia Experimentalis et Applicata, Vol. 13, No. 4. (1 December 1970), pp. 377-394. by H. H. W. Velthuis posted to splicing alternative by Antje1981 on 2009-08-12 10:35:24 as
	Analysis of splicing patterns by pyrosequencing [My Copy] Nucl. Acids Res. (11 August 2009), gkp626. by Agnes Mereau, Vincent Anquetil, Marie Cibois, et al.Maud Noiret, Aline Primot, Audrey Vallee, Luc Paillard posted to splicing by AlexBateman to the group Journal picks on 2009-08-12 10:24:26 as
	Systematic analysis of alternative promoters correlated with alternative splicing in human genes [My Copy] Genomics, Vol. 93, No. 5. (May 2009), pp. 420-425. by Xiaojuan Ma, Jesse Li-Ling, Qianli Huang, Xi Chen, Lin Hou, Fei Ma posted to alternative human promoter splicing by cajunsushi on 2009-08-10 17:59:32 as
	Control of alternative splicing through siRNA-mediated transcriptional gene silencing [My Copy] Nat Struct Mol Biol, Vol. 16, No. 7. (July 2009), pp. 717-724. by Mariano Allo, Valeria Buggiano, Juan P. Fededa, et al.Ezequiel Petrillo, Ignacio Schor, Manuel de La Mata, Eneritz Agirre, Mireya Plass, Eduardo Eyras, Sherif A. Elela, Roscoe Klinck, Benoit Chabot, Alberto R. Kornblihtt posted to alternative gene regulation silencing sirna splicing transcription by robfsouza on 2009-08-05 17:21:49 as along with 1 person gdb
	Highly Conserved Histidine Plays a Dual Catalytic Role in Protein Splicing: A pKa Shift Mechanism [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Zhenming Du, Philip T. Shemella, Yangzhong Liu, et al.Scott A. Mccallum, Brian Pereira, Saroj K. Nayak, Georges Belfort, Marlene Belfort, Chunyu Wang posted to acidbase biology ph protein splicing by marissalee on 2009-08-05 06:06:04 as
	Transcription, chromatin condensation, and gene migration [My Copy] J. Cell Biol., Vol. 185, No. 1. (6 April 2009), pp. 7-9. by James G. Mcnally posted to methods spatial-organization splicing by inesdesantiago on 2009-08-04 14:25:58 as
	Polyadenylation releases mRNA from RNA polymerase II in a process that is licensed by splicing [My Copy] RNA, Vol. 15, No. 5. (May 2009), pp. 823-836. by Frank Rigo, Harold G. Martinson posted to polymerase posttranscription splicing by inesdesantiago on 2009-08-04 11:48:58 as
	Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing [My Copy] BMC Genomics, Vol. 10, No. Suppl 1. (2009), S4. by Xin Wang, Kejun Wang, Milan Radovich, et al.Yue Wang, Guohua Wang, Weixing Feng, Jeremy Sanford, Yunlong Liu posted to splicing srs tissue by cajunsushi on 2009-07-31 20:25:13 as
	Group II introns: structure, folding and splicing mechanism. [My Copy] Biological chemistry, Vol. 388, No. 7. (July 2007), pp. 665-678. by O. Fedorova, N. Zingler posted to catalysis folding groupii intron mechanism splicing by lukzky on 2009-07-28 21:06:52 as
	A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. [My Copy] Science (New York, N.Y.), Vol. 321, No. 5891. (15 August 2008), pp. 956-960. by M. Sultan, M. H. Schulz, H. Richard, et al.A. Magen, A. Klingenhoff, M. Scherf, M. Seifert, T. Borodina, A. Soldatov, D. Parkhomchuk, D. Schmidt, S. O'Keeffe, S. Haas, M. Vingron, H. Lehrach, M. L. Yaspo posted to alternative splicing by eszczurek on 2009-07-27 21:48:17 as along with 27 people and 2 groups zufar n00c dna inesdesantiago ilyashl TRHvidsten poschm bertelsen ivanek guhjy wutongbin jfr raistrick gracio xingxu psique oelemento Ema reyez caseybrown kjglennie dh0000 GeeSharpMinor balicea djkt ArtemPankin zwang BenosLab Khavkin's lab
	Identification and analysis of alternative splicing events conserved in human and mouse [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 8. (22 February 2005), pp. 2850-2855. by Gene W. Yeo, Eric Van Nostrand, Dirk Holste, Tomaso Poggio, Christopher B. Burge posted to microarrays rna splicing by jonilaserson on 2009-07-23 22:20:25 as along with 4 people and 1 group eoghanharr radek penka stajich Nie
	Bioinformatics analysis of alternative splicing [My Copy] Brief Bioinform, Vol. 6, No. 1. (1 January 2005), pp. 23-33. by Christopher Lee, Qi Wang posted to alternative review splicing by woodson8 on 2009-07-22 18:11:27 as along with 2 people and 3 groups Cortel dalloliogm Web2 splicing yeast
	Alternative splicing: new insights from global analyses. [My Copy] Cell, Vol. 126, No. 1. (14 July 2006), pp. 37-47. by B. J. Blencowe posted to alternative splicing by woodson8 on 2009-07-22 18:05:42 as along with 6 people and 3 groups jfr dchughes saru jwestbrook mdimon cchand G4ID King_Lab Genetics-of-Gambling
	Reversal of RNA Dominance by Displacement of Protein Sequestered on Triplet Repeat RNA [My Copy] Science, Vol. 325, No. 5938. (17 July 2009), pp. 336-339. by Thurman M. Wheeler, Krzysztof Sobczak, John D. Lueck, et al.Robert J. Osborne, Xiaoyan Lin, Robert T. Dirksen, Charles A. Thornton posted to antisense ion_transport repeat_expansion rna splicing triplet_repeat by biomcgary on 2009-07-17 16:54:37 as along with 1 person jbhiatt
	"Dwarf" Estrogen Receptor in Breast Cancer and Resistance to Tamoxifen [My Copy] J Clin Oncol, Vol. 27, No. 21. (20 July 2009), pp. 3413-3415. by Amy M. Fowler, Richard J. Santen, D. Craig Allred posted to alternative breast esr1 moa resistance splicing tamoxifen by misonneh on 2009-07-17 05:33:49 as
	Mapping and quantifying mammalian transcriptomes by RNA-Seq. [My Copy] Nature methods, Vol. 5, No. 7. (30 July 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted to mouse rna sequencing splicing by jonilaserson on 2009-07-17 00:44:34 as along with 39 people and 2 groups jwfoley heliopais juokcho aktas debasis bertelsen idonaldson darian stubrown dswan ewilban1 mtagaya woodson8 burak inesdesantiago ThomasDOtto n00c GustavoG ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb Bioinformatics SIMR bioinformatics
	TopHat: discovering splice junctions with RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1105-1111. by Cole Trapnell, Lior Pachter, Steven L. Salzberg posted to rna sequencing splicing by jonilaserson on 2009-07-15 01:41:40 as along with 21 people and 2 groups heliopais dakelley druvus GustavoLacerda stubrown polivares torfinnnome jmcq mtagaya gdb guhjy ThomasDOtto n00c ghattem xingxu djkt vplagnol bertelsen natstreet idoerg vmsr BergmanLab SIMR bioinformatics
	A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 163. by Alessandro Guffanti, Michele Iacono, Paride Pelucchi, et al.Namshin Kim, Giulia Soldà, Larry J. Croft, Ryan J. Taft, Ermanno Rizzi, Marjan Askarian-Amiri, Raoul J. Bonnal, Maurizio Callari, Flavio Mignone, Graziano Pesole, Giovanni Bertalot, Luigi Rossi R. Bernardi, Alberto Albertini, Christopher Lee, John S. Mattick, Ileana Zucchi, Gianluca De Bellis posted to cancer rna sequencing splicing by jonilaserson on 2009-07-15 01:17:35 as along with 3 people guhjy fenghezi alessandro_guffanti
	Alternative isoform regulation in human tissue transcriptomes [My Copy] Nature, Vol. 456, No. 7221. (02 November 2008), pp. 470-476. by Eric T. Wang, Rickard Sandberg, Shujun Luo, et al.Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F. Kingsmore, Gary P. Schroth, Christopher B. Burge posted to rna sequencing splicing by jonilaserson on 2009-07-15 01:13:57 as along with 21 people and 1 group ajbattle stubrown tonamswish frohike fenghezi heliopais zxmon21 tanglingfung xingxu felsani wimufi Zephyrus gjuggler bertelsen eluinka gfliustu vplagnol kieran101 emptyhb rschulz abizar Roswell Cancer Crosstalk
	Regulation of growth and dissemination of a human lymphoma by CD44 splice variants [My Copy] J Cell Sci, Vol. 108, No. 4. (1 April 1995), pp. 1723-1733. by A. Bartolazzi, D. Jackson, K. Bennett, et al.A. Aruffo, R. Dickinson, J. Shields, N. Whittle, I. Stamenkovic posted to cd44 lymphoma metastasis splicing by t2pp on 2009-07-14 09:30:31 as
	RNA repair restores hemoglobin expression in IVS2-654 thalassemic mice. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 4. (27 January 2009), pp. 1205-1210. by S. Svasti, T. Suwanmanee, S. Fucharoen, et al.H. M. Moulton, M. H. Nelson, N. Maeda, O. Smithies, R. Kole posted to morpholino rna-repair splicing by rschulz on 2009-06-25 18:03:39 as
	A role for the yeast cell cycle/splicing factor Cdc40 in the G1/S transition [My Copy] Current Genetics, Vol. 51, No. 2. (February 2007), pp. 123-140. by Kaplan, Yosef, Kupiec, Martin posted to cell cycle damage dna splicing by diaz0058 on 2009-06-24 17:50:23 as
	RNA and disease. [My Copy] Cell, Vol. 136, No. 4. (20 February 2009), pp. 777-793. by T. A. Cooper, L. Wan, G. Dreyfuss posted to genetics review rna splicing by psique on 2009-06-23 17:05:09 as along with 1 person provero
	Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays [My Copy] BMC Genomics, Vol. 9 (07 November 2008), 529. by Amandine Bemmo, David Benovoy, Tony Kwan, Daniel J. Gaffney, Roderick V. Jensen, Jacek Majewski posted to affymetrix analysis array exon gene-expression genechip isoform splicing variation by bertelsen on 2009-06-22 17:17:29 as along with 6 people jfr guhjy ivanek pengchy dswan caseybrown
	Genome-Wide Identification of Alternative Splice Forms Down-Regulated by Nonsense-Mediated mRNA Decay in <italic>Drosophila</italic> [My Copy] PLoS Genet, Vol. 5, No. 6. (19 June 2009), e1000525. by Kasper D. Hansen, Liana F. Lareau, Marco Blanchette, et al.Richard E. Green, Qi Meng, Jan Rehwinkel, Fabian L. Gallusser, Elisa Izaurralde, Donald C. Rio, Sandrine Dudoit, Steven E. Brenner posted to expression fly rna splicing by djkt on 2009-06-19 16:35:13 as
	Overestimation of alternative splicing caused by variable probe characteristics in exon arrays [My Copy] Nucl. Acids Res. (15 June 2009), gkp508. by Dimos Gaidatzis, Kirsten Jacobeit, Edward J. Oakeley, Michael B. Stadler posted to exon microarray probe splicing statistics variation by neils on 2009-06-17 00:15:36 as
	"Nought May Endure but Mutability": Spliceosome Dynamics and the Regulation of Splicing [My Copy] Molecular Cell, Vol. 30, No. 6. (20 June 2008), pp. 657-666. by Duncan J. Smith, Charles C. Query, Maria M. Konarska posted to review spliceosome splicing by diaz0058 on 2009-06-11 00:18:33 as along with 1 person raistrick

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alternative	151
rna	56
intron	46
evolution	44
human	35
review	31
exon	30
mrna	28
microarray	25
transcription	25
expression	23
yeast	23
regulation	22
genome	21
alternative-splicing	20
bioinformatics	19
protein	16
sequencing	16
alternative_splicing	15
est	15
microrna	15
affymetrix	13
cancer	12
drosophila	12
gene	12
rna-seq	11
motif	10
genefinding	9
mouse	9
transcriptome	9
neuron	8
neuroscience	8
alternate	7
cdc2l5	7
cell	7
fungi	7
mirna	7
pre-mrna	7
snp	7
trans-splicing	7
transcript	7
analysis	6
cdk	6
cholecystokinin-b-gastrin-receptor	6
chromatin	6
data	6
selection	6
spliceosome	6
sr	6
translation	6
cdk13	5
cycl	5
development	5
differential	5
genetics	5
genomics	5
histone	5
inteins	5
muscle	5
nucleosome	5
polyadenylation	5
statistics	5
trna	5
variation	5
alu	4
breast	4
cdna	4
comparative-analysis	4
cyclin	4
cyclinl	4
database	4
db	4
elegans	4
falciparum	4
intein	4
intron_evolution	4
intron_retention	4
introns	4
kinase	4
neoformans	4
pitaivre	4
processing	4
promoter	4
riboswitch	4
ribozyme	4
saccharomyces	4
alt	3
coupling	3
eukaryotic	3
exonisation	3
groupii	3
h3k36me3	3
hapmap	3
hnrnp	3
nucleolar	3
probe	3
repeats	3
transcriptomics	3
urchin	3
utr	3

Tag splicing [at least 200 articles] Export

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