Tag stochastic_simulation [27 articles] Export

Recent papers classified by the tag stochastic_simulation.

	Stochastic modelling of reaction–diffusion processes: algorithms for bimolecular reactions [My Copy] Physical Biology In Physical Biology, Vol. 6, No. 4. (December 2009), 046001. by Radek Erban, S. Jonathan Chapman posted to stochastic_simulation reaction_diffusion by vshahrez on 2009-12-11 13:00:32 as along with 1 person mhellmann
	Simultaneous Stochastic Simulation of Multiple Perturbations in Biological Network Models [My Copy] Computational Methods in Systems Biology (2007), pp. 15-31. by Werner Sandmann posted to stochastic_simulation reactions by m_j on 2009-12-02 14:46:06 as
	Approximations of Stochastic Hybrid Systems [My Copy] Automatic Control, IEEE Transactions on In Automatic Control, IEEE Transactions on, Vol. 54, No. 6. (2009), pp. 1193-1203. by A. A. Julius, G. J. Pappas posted to stochastic_simulation stochastic_noise stochastic linear_matrix_inequality hybrid_systems approximation app by Sergey_gerbek to the group Hybrid systems on 2009-11-04 08:57:53 as along with 1 person jford
	Probabilistic projections of HIV prevalence using Bayesian melding [My Copy] Annals of Applied Statistics, Vol. 1, No. 1. (June 2007), pp. 229-248. by Leontine Alkema, Adrian E. Raftery, Samuel J. Clark posted to stochastic_simulation free_state_failure by MRCBIRD on 2009-10-08 12:00:10 as
	A Methodological Study of a Nonlinear Stochastic Model of an AIDS Epidemic with Recruitment [My Copy] Math Med Biol, Vol. 6, No. 3. (1 January 1989), pp. 179-203. by Charles J. Mode, Herman E. Gollwitzer, Michael A. Salsburg, Candace K. Sleeman posted to stochastic_simulation free_state_failure by MRCBIRD on 2009-10-08 11:06:50 as
	Stochastic simulation of HIV population dynamics through complex network modelling [My Copy] Int. J. Comput. Math., Vol. 85, No. 8. (August 2008), pp. 1175-1187. by P. M. A. Sloot, S. V. Ivanov, A. V. Boukhanovsky, D. A. M. C. Van De Vijver, C. A. B. Boucher posted to stochastic_simulation by MRCBIRD on 2009-10-07 14:33:56 as
	The impact of male circumcision on HIV incidence and cost per infection prevented: a stochastic simulation model from Rakai, Uganda. [My Copy] AIDS (London, England), Vol. 21, No. 7. (23 April 2007), pp. 845-850. by Ronald H. Gray, Xianbin Li, Godfrey Kigozi, et al.David Serwadda, Fred Nalugoda, Stephen Watya, Steven J. Reynolds, Maria Wawer posted to stochastic_simulation free_state_failure by MRCBIRD on 2009-10-07 14:11:37 as
	Stochastic simulation of the impact of antiretroviral therapy and HIV vaccines on HIV transmission; Rakai, Uganda. [My Copy] AIDS, Vol. 17, No. 13. (5 September 2003), pp. 1941-1951. by Ronald H. Gray, Xianbin Li, Maria J. Wawer, et al.Stephen J. Gange, David Serwadda, Nelson K. Sewankambo, Richard Moore, Fred Wabwire-Mangen, Tom Lutalo, Thomas C. Quinn, Rakai Project Group posted to stochastic_simulation free_state_failure by MRCBIRD on 2009-10-07 13:00:43 as along with 1 person Vaccine
	The multivariate Langevin and Fokker--Planck equations [My Copy] American Journal of Physics, Vol. 64, No. 10. (1996), pp. 1246-1257. by Daniel T. Gillespie posted to stochastic_simulation brownian_dynamics by m_j on 2009-09-16 09:18:58 as
	Hybrid stochastic simplifications for multiscale gene networks [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 89. by Alina Crudu, Arnaud Debussche, Ovidiu Radulescu posted to stochastic_simulation markov_models gene_networks discrete_events computational_biology by coffeerv on 2009-09-07 17:57:32 as
	Insight or illusion? Seeing inside the cell with mesoscopic simulations. [My Copy] HFSP journal, Vol. 2, No. 1. (February 2008), pp. 1-6. by J. C. Shillcock posted to brownian_dynamics molecular_dynamics stochastic_simulation by m_j on 2009-07-27 01:30:12 as
	A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks [My Copy] (10 Jun 2009) by Rajesh Ramaswamy, Nélido González-Segredo, Ivo F. Sbalzarini posted to metabolic_kinetics metabolism stochastic_simulation by apocapoc on 2009-06-15 02:56:40 as
	Efficient, Correct Simulation of Biological Processes in the Stochastic Pi-calculus [My Copy] Computational Methods in Systems Biology (2007), pp. 184-199. by Andrew Phillips, Luca Cardelli posted to stochastic_simulation by m_j on 2009-05-04 15:03:15 as along with 1 person mattis23
	A multi-algorithm, multi-timescale method for cell simulation [My Copy] Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 538-546. by Kouichi Takahashi, Kazunari Kaizu, Bin Hu, Masaru Tomita posted to multi-scale stochastic_simulation by m_j on 2009-05-04 08:33:29 as along with 7 people and 3 groups arjunan fierykylin chrn carmaus dagmar lenov csanford dIEMoSIRIS MoSi-Rostock compneur
	Binomial tau-leap spatial stochastic simulation algorithm for applications in chemical kinetics [My Copy] The Journal of Chemical Physics, Vol. 127, No. 10. (2007) by Tatiana, Kevin Burrage posted to spatial_simulation stochastic_simulation tau_leaping by m_j on 2009-01-07 14:30:12 as along with 1 person and 1 group dagmar compneur
	Rejection-free rule-based kinetic Monte Carlo simulation of multivalent ligand-receptor interactions [My Copy] (1 Sep 2009) by Jin Yang, William S. Hlavacek posted to stochastic_simulation by akraemer on 2009-01-02 03:56:16 as along with 2 people apocapoc jjray
	Identifying Optimal Lipid Raft Characteristics Required To Promote Nanoscale Protein-Protein Interactions on the Plasma Membrane [My Copy] Mol. Cell. Biol., Vol. 26, No. 1. (1 January 2006), pp. 313-323. by Dan V. Nicolau, Kevin Burrage, Robert G. Parton, John F. Hancock posted to lipid_rafts plasma_membrane stochastic_simulation by m_j on 2008-12-03 14:49:04 as along with 1 person ARobson
	Oscillatory regulation of Hes1: Discrete stochastic delay modelling and simulation. [My Copy] PLoS Comput Biol, Vol. 2, No. 9. (8 September 2006) by M. Barrio, K. Burrage, A. Leier, T. Tian posted to stochastic_simulation by m_j on 2008-11-19 11:03:59 as along with 1 person lenov
	Modelling and simulation of intracellular dynamics: Choosing an appropriate framework [My Copy] IEEE Transactions on NanoBioscience, Vol. 3 (2004), pp. 200-207. by Olaf Wolkenhauer, Mukhtar Ullah, Walter Kolch, Kwang-Hyun Cho posted to deterministic stochastic_simulation by m_j on 2008-11-04 16:14:39 as
	Computational methods for diffusion-influenced biochemical reactions. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 15. (1 August 2007), pp. 1969-1977. by Maciej Dobrzynski, Jordi Vidal V. Rodríguez, Jaap A. Kaandorp, Joke G. Blom posted to brownian_dynamics diffusion stochastic_simulation by m_j on 2008-10-20 13:52:38 as along with 6 people and 1 group gabe_rosser jjray ocs balabu dagmar jmccammon McCammon
	Stochastic vs. Deterministic Modeling of Intracellular Viral Kinetics [My Copy] Journal of Theoretical Biology, Vol. 218, No. 3. (07 October 2002), pp. 309-321. by R. Srivastava, L. You, J. Summers, J. Yin posted to deterministic modeling stochastic_simulation by m_j on 2008-10-20 11:07:55 as
	A general method for numerically simulating the stochastic time evolution of coupled chemical reactions [My Copy] Journal of Computational Physics, Vol. 22, No. 4. (December 1976), pp. 403-434. by D. Gillespie posted to gillespie ssa stochastic_simulation by m_j on 2008-09-11 15:45:49 as along with 13 people and 1 group Dangerfc bertelsen devinli fierykylin jporternj hadesnumb jberro rjoy mazzucco ptupper petermilner matthewhflamm jjray Projet_ENSIMAG
	FERN - a Java framework for stochastic simulation and evaluation of reaction networks. [My Copy] BMC bioinformatics, Vol. 9 (29 August 2008), 356. by Florian Erhard, Caroline C. Friedel, Ralf Zimmer posted to modelling sbsi stochastic_simulation by lptolik on 2008-09-03 05:03:31 as along with 4 people guhjy trevinor reyez grahamc
	Stochastic modeling and simulation of gene networks - A review of the state-of-the-art research on stochastic simulations [My Copy] Signal Processing Magazine, IEEE In Signal Processing Magazine, IEEE, Vol. 24, No. 1. (2007), pp. 27-36. by X. Cai, X. Wang posted to stochastic_simulation by m_j on 2008-06-23 15:35:20 as
	Stochastic simulation of chemical reactions with spatial resolution and single molecule detail. [My Copy] Phys Biol, Vol. 1, No. 3-4. (December 2004), pp. 137-151. by S. S. Andrews, D. Bray posted to particle_based simulation stochastic_simulation spatial_simulation by m_j on 2008-05-14 13:40:44 as along with 9 people and 3 groups vladimirov jjray fierykylin roland_ewald dagmar csanford lenov gabe_rosser arjunan dIEMoSIRIS MoSi-Rostock compneur
	Space as the final frontier in stochastic simulations of biological systems [My Copy] FEBS Letters In Systems Biology, Vol. 579, No. 8. (21 March 2005), pp. 1789-1794. by Caroline Lemerle, Barbara Di Ventura, Luis Serrano posted to review spatial_modelling stochastic_simulation by arne on 2007-07-30 16:13:42 as along with 2 people ocs jjray
	Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15310-15315. by A. Xayaphoummine, T. Bucher, F. Thalmann, H. Isambert posted to stochastic_simulation by Hosna on 2006-07-18 00:39:06 as along with 6 people and 3 groups evaf austin marcius arcticrasta condon Kiarostami beta BioinfoCIPF SGU-CIPF

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simulation	14
gillespie	8
ssa	6
free_state_failure	4
schieber	4
ssa_alternative	4
stiff_systems	4
tau_leaping	4
brownian_dynamics	3
particle_based	3
app	2
approximation	2
deterministic	2
full_chain	2
hua	2
hybrid_systems	2
linear_matrix_inequality	2
modeling	2
reactions	2
review	2
spatial_modelling	2
spatial_simulation	2
stochastic	2
stochastic_noise	2
binder	1
brush	1
calculus	1
cell_dynamics	1
computational_biology	1
diffusion	1
discrete_events	1
double_step	1
gene_networks	1
lipid_rafts	1
markov_models	1
metabolic_kinetics	1
metabolism	1
modelling	1
molecular_crowding	1
molecular_dynamics	1
multi-scale	1
odm	1
pi_calculus	1
plasma_membrane	1
reaction-diffusion	1
reaction_diffusion	1
sbsi	1
simulator	1
systems_biology	1
venerus	1

Tag stochastic_simulation [27 articles] Export

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