Tag stochasticity [111 articles] Export

Recent papers classified by the tag stochasticity.

	Summing up the noise in gene networks. [My Copy] Nature, Vol. 427, No. 6973. (29 January 2004), pp. 415-418. by J. Paulsson posted to stochasticity single-cell by pkm on 2009-11-06 08:35:47 as along with 9 people jjray bayesian balabu jiyu mhucka timflutre margaritis marcio dylanwalker
	Induction of Competence Regulons as a General Response to Stress in Gram-Positive Bacteria [My Copy] Annual Review of Microbiology, Vol. 60, No. 1. (2006), pp. 451-475. by Jean P. Claverys, Marc Prudhomme, Bernard Martin posted to stochasticity single-cell by pkm on 2009-10-07 16:22:58 as
	Engineering stochasticity in gene expression [My Copy] Mol. BioSyst., Vol. 4, No. 7. (July 2008), pp. 754-761. by Jeffrey J. Tabor, Travis S. Bayer, Zachary B. Simpson, Matthew Levy, Andrew D. Ellington posted to stochasticity single-cell by pkm on 2009-10-07 15:23:30 as along with 2 people austin jjray
	Linking Stochastic Dynamics to Population Distribution: An Analytical Framework of Gene Expression [My Copy] Physical Review Letters, Vol. 97, No. 16. (2006), 168302. by Nir Friedman, Long Cai, X. Sunney Xie posted to stochasticity single-cell genetics by pkm on 2009-09-25 14:33:21 as along with 2 people yyfwuhan ddcttrl
	Regulation of noise in the expression of a single gene. [My Copy] Nat Genet, Vol. 31, No. 1. (May 2002), pp. 69-73. by E. M. Ozbudak, M. Thattai, I. Kurtser, A. D. Grossman, A. van Oudenaarden posted to stochasticity single-cell genetics by pkm on 2009-09-25 11:29:11 as along with 14 people balabu roys rklancer rahmilale dbikard mhucka margaritis kfm9876 vladimirov jiny dylanwalker klo austin jjray
	Integrated microfluidic bioprocessor for single-cell gene expression analysis [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20173-20178. by Nicholas M. Toriello, Erik S. Douglas, Numrin Thaitrong, et al.Sonny C. Hsiao, Matthew B. Francis, Carolyn R. Bertozzi, Richard A. Mathies posted to stochasticity single-cell by pkm on 2009-09-21 11:43:23 as along with 3 people abhishek_tiwari guhjy Vincent_Rouilly
	Modeling stochasticity and robustness in gene regulatory networks [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i101-109. by Abhishek Garg, Kartik Mohanram, Alessandro Di Cara, Giovanni De Micheli, Ioannis Xenarios posted to stochasticity single-cell by pkm on 2009-09-21 11:28:10 as along with 3 people and 1 group ruichu dlobo jvb GEB
	Stochasticity and Cell Fate [My Copy] Science, Vol. 320, No. 5872. (4 April 2008), pp. 65-68. by Richard Losick, Claude Desplan posted to stochasticity single-cell by pkm on 2009-09-21 11:22:03 as along with 8 people and 1 group adamnellis Arjeny lukaswindhager balabu margaritis paulschlesinger davidlott josedavid GEB
	Extinction risk depends strongly on factors contributing to stochasticity [My Copy] Nature, Vol. 454, No. 7200. (03 July 2008), pp. 100-103. by Brett A. Melbourne, Alan Hastings posted to stochasticity extinction by jlin on 2009-09-16 20:38:16 as along with 4 people and 2 groups stringertheory nurban joseph_x_zhou jlgreen bioNetwork_sysBio Green Lab
	Invasion Dynamics in Spatially Heterogeneous Environments [My Copy] The American Naturalist, Vol. 0, No. 0. (0000), pp. 000-000. by Sebastian J. Schreiber, James O. Lloyd‐Smith posted to stochasticity bi by iBartomeus on 2009-09-09 08:36:54 as along with 1 person tkeitt
	What does systems biology mean for drug development? [My Copy] Current medicinal chemistry, Vol. 15, No. 15. (2008), pp. 1520-1528. by André Schrattenholz, Vukić Soskić posted to systems-biology stochasticity specificity review pharmacogenomic multi-target drug-discovery drug disease complexity affinity by bertelsen on 2009-09-05 10:47:26 as along with 1 person flbarroso
	Effects of stochasticity in models of the cell cycle: from quantized cycle times to noise-induced oscillations [My Copy] Journal of Theoretical Biology, Vol. 228, No. 3. (June 2004), pp. 293-301. by R. Steuer posted to stochasticity resonance oscillators noise model cell-cycle by bertelsen on 2009-09-01 20:46:56 as
	Stochasticity in Protein Levels Drives Colinearity of Gene Order in Metabolic Operons of Escherichia coli [My Copy] PLoS Biol, Vol. 7, No. 5. (26 May 2009), e1000115. by Károly Kovács, Laurence D. Hurst, Balázs Papp posted to stochasticity by elifsu on 2009-08-25 09:20:14 as along with 6 people emptyhb trfield dipenps jjray pinney kentsis
	Partial penetrance facilitates developmental evolution in bacteria [My Copy] Nature, Vol. 460, No. 7254. (05 July 2009), pp. 510-514. by Avigdor Eldar, Vasant K. Chary, Panagiotis Xenopoulos, et al.Michelle E. Fontes, Oliver C. Loson, Jonathan Dworkin, Patrick J. Piggot, Michael B. Elowitz posted to computational fourstar stochasticity systems by jbhiatt on 2009-07-22 19:50:05 as along with 8 people and 1 group ellarond bpcusack psique absterga biomcgary maren phoenixzxl jjray Journal picks
	Spontaneous action potentials due to channel fluctuations [My Copy] Biophysical Journal, Vol. 71, No. 6. (December 1996), pp. 3013-3021. by C. Chow, J. White posted to describe heart in stochasticity the by Dangerfc on 2009-07-07 18:19:13 as
	Estimating stochastic elasticities directly from longitudinal data [My Copy] Ecology Letters, Vol. 12, No. 8. (2009), pp. 806-812. by C. V. Haridas, Shripad Tuljapurkar, Tim Coulson posted to stochasticity by iBartomeus to the group behavior_flexibility on 2009-06-23 08:40:46 as along with 1 person gfox
	Coexistence in stochastic spatial models [My Copy] (12 Jun 2009) by Rick Durrett posted to coexistence model review spatial stochasticity by timothee-poisot on 2009-06-15 13:26:56 as
	Gene Regulation at the Single-Cell Level [My Copy] Science, Vol. 307, No. 5717. (25 March 2005), pp. 1962-1965. by Nitzan Rosenfeld, Jonathan W. Young, Uri Alon, Peter S. Swain, Michael B. Elowitz posted to stochasticity by boko4ikameto on 2009-05-26 17:58:25 as along with 20 people dbikard pkm ddcttrl Borelli kshundyak jimeet rklancer snuppepuppan kentsis Toze bayesian balicea JKelly555 balabu comb mhucka timflutre margaritis csgillespie vladimirov
	Noise Propagation in Gene Networks [My Copy] Science, Vol. 307, No. 5717. (25 March 2005), pp. 1965-1969. by Juan M. Pedraza, Alexander van Oudenaarden posted to stochasticity by boko4ikameto on 2009-05-26 17:54:13 as along with 17 people balabu winterschlaefer cjryan jimeet rklancer snuppepuppan JKelly555 samal madhadron jiyu mhucka timflutre margaritis brianb suizan jiny dylanwalker
	Structural biology. Dynamic visions of enzymatic reactions. [My Copy] Science, Vol. 313, No. 5793. (15 September 2006), pp. 1586-1587. by M. Vendruscolo, C. M. Dobson posted to folding perspectives protein stochasticity by apaydin on 2009-05-20 07:13:25 as along with 1 person tny
	Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis. [My Copy] Nature, Vol. 459, No. 7245. (21 May 2009), pp. 428-432. by Sabrina L. Spencer, Suzanne Gaudet, John G. Albeck, John M. Burke, Peter K. Sorger posted to stochasticity by gbloeb on 2009-05-07 02:54:50 as along with 8 people gabrieljoelmitchell jjray fenghezi dswan leliavski absterga brianb songpku
	Stochasticity in gene expression: from theories to phenotypes [My Copy] Nat Rev Genet, Vol. 6, No. 6. (10 May 2005), pp. 451-464. by Mads Kaern, Timothy C. Elston, William J. Blake, James J. Collins posted to stochasticity by boko4ikameto on 2009-05-05 16:17:01 as along with 8 people pkm bertelsen bcondon ccots wnpx tabu balabu timflutre
	Efficient methods for studying stochastic disease and population dynamics [My Copy] Theoretical Population Biology, Vol. 75, No. 2-3. (March 2009), pp. 133-141. by M. J. Keeling, J. V. Ross posted to stochasticity by iBartomeus to the group behavior_flexibility on 2009-04-30 10:46:53 as
	Minimum viable population size: A meta-analysis of 30 years of published estimates [My Copy] Biological Conservation, Vol. 139, No. 1-2. (September 2007), pp. 159-166. by L. Traill, C. Bradshaw, B. Brook posted to stochasticity by iBartomeus on 2009-04-16 08:03:32 as
	Chance Establishment for Sexual, Semelparous Species: Overcoming the Allee Effect [My Copy] The American Naturalist, Vol. 0, No. 0. (0000), pp. 000-000. by Christopher l Jerde, Caroline j Bampfylde, Mark a Lewis posted to invasion stochasticity by iBartomeus to the group behavior_flexibility on 2009-04-16 07:54:48 as
	Stochasticity in N-body Simulations of Disc Galaxies [My Copy] (20 Mar 2009) by J. A. Sellwood, Victor P. Debattista posted to stochasticity by tszkali on 2009-03-23 20:03:14 as along with 2 people peirani ibis
	Transcriptional infidelity promotes heritable phenotypic change in a bistable gene network. [My Copy] PLoS biology, Vol. 7, No. 2. (24 February 2009), e44. by Alasdair J. Gordon, Jennifer A. Halliday, Matthew D. Blankschien, Philip A. Burns, Fumio Yatagai, Christophe Herman posted to bistability fidelity stochasticity transcription by margaritis on 2009-03-09 10:37:52 as along with 8 people and 1 group Winzer ocs katiejclowers biomcgary emptyhb jjray bpcusack VGreiff Morgan Lab-KSU
	Stochastic Gene Expression in a Single Cell [My Copy] Science, Vol. 297, No. 5584. (16 August 2002), pp. 1183-1186. by Michael B. Elowitz, Arnold J. Levine, Eric D. Siggia, Peter S. Swain posted to stochasticity single-cell genetics by pkm on 2009-02-09 12:05:42 as along with 23 people and 2 groups struanmurray yyfwuhan balabu dbikard cjryan ClaireFB wilvc madhadron cottrell mmt litam mhucka timflutre margaritis roland_ewald ptupper mjoach tvdbulck jiny balicea dylanwalker jjray austin dIEMoSIRIS MoSi-Rostock
	Regulatory activity revealed by dynamic correlations in gene expression noise [My Copy] Nature Genetics, Vol. 40, No. 12. (23 November 2008), pp. 1493-1498. by Mary J. Dunlop, Robert S. Cox, Joseph H. Levine, Richard M. Murray, Michael B. Elowitz posted to fourstar stochasticity systems transcriptomics by jbhiatt on 2008-12-17 19:57:21 as along with 5 people ellarond balicea erel10 balabu jjray
	A Stochastic Single-Molecule Event Triggers Phenotype Switching of a Bacterial Cell [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 442-446. by Paul J. Choi, Long Cai, Kirsten Frieda, X. Sunney Xie posted to stochasticity threestar by jbhiatt on 2008-12-16 22:48:36 as along with 11 people and 1 group yyfwuhan balabu pkm stasaki lflorez jonesn cactus alexknight margaritis jjray samjlord moernerlab
	Nature, nurture, or chance: stochastic gene expression and its consequences. [My Copy] Cell, Vol. 135, No. 2. (17 October 2008), pp. 216-226. by Arjun Raj, Alexander van Oudenaarden posted to review stochasticity threestar by jbhiatt on 2008-12-16 22:42:35 as along with 12 people and 1 group ddcttrl pkm Vincent_Rouilly iml burnettjc GustavoLacerda samgj erel10 Zephyrus ocs sg45653 jjray Roswell Cancer Crosstalk
	Predator-Prey Cycles from Resonant Amplification of Demographic Stochasticity [My Copy] Physical Review Letters, Vol. 94, No. 21. (2005) by A. J. Mckane, T. J. Newman posted to fluctuations predator-prey resonance stochasticity theory by margaritis on 2008-10-28 11:52:50 as
	The stochastic nature of biochemical networks. [My Copy] Current opinion in biotechnology (25 July 2008) by Vahid Shahrezaei, Peter S S. Swain posted to fluctuations gene-expression noise review stochasticity by margaritis on 2008-09-04 16:17:00 as along with 1 person erel10
	The chemical Langevin equation [My Copy] The Journal of Chemical Physics, Vol. 113, No. 1. (2000), pp. 297-306. by Daniel T. Gillespie posted to gillespie langevinequation ppi stochasticity by dylanwalker on 2008-06-20 03:53:14 as along with 7 people Dangerfc bertelsen cmetzner jporternj sjayanthi jstajic rjoy
	Stochastic spineless expression creates the retinal mosaic for colour vision [My Copy] Nature, Vol. 440, No. 7081., pp. 174-180. by Mathias F. Wernet, Esteban O. Mazzoni, Arzu Ãelik, Dianne M. Duncan, Ian Duncan, Claude Desplan posted to development gene-expression stochasticity vision by margaritis on 2008-06-10 15:30:40 as
	Coevolutionary dynamics in large, but finite populations [My Copy] Physical Review E, Vol. 74, No. 1. (11 July 2006), 011901. by Arne Traulsen, Jens C. Claussen, Christoph Hauert posted to evolution game stochasticity by Koh on 2008-05-23 10:06:25 as along with 4 people cosmizer anarinsk skumagai Scis0000002
	Colored extrinsic fluctuations and stochastic gene expression [My Copy] Mol Syst Biol, Vol. 4 (6 May 2008) by Vahid Shahrezaei, Julien F. Ollivier, Peter S. Swain posted to extrinsic fluctuations noise stochasticity stochastic_simulations theory by margaritis on 2008-05-07 11:47:21 as along with 3 people chiufanlee jjray Ema
	Intrinsic noise, dissipation cost, and robustness of cellular networks: The underlying energy landscape of MAPK signal transduction [My Copy] Proceedings of the National Academy of Sciences (17 April 2008), 0708708105. by Saul Lapidus, Bo Han, Jin Wang posted to noise potential regulatory_network stochasticity by margaritis on 2008-04-25 15:01:52 as along with 4 people jjray biehl ddcttrl cactus
	Transcriptional control of noise in gene expression [My Copy] Proceedings of the National Academy of Sciences (19 March 2008), 0707904105. by Alvaro Sanchez, Jane Kondev posted to noise regulation stochasticity theory transcription by margaritis on 2008-04-07 10:58:23 as along with 7 people jjray balabu lambda ddcttrl austin sbottani inesdesantiago
	Stochastic switching as a survival strategy in fluctuating environments [My Copy] Nat Genet, Vol. 40, No. 4. (April 2008), pp. 471-475. by Murat Acar, Jerome T. Mettetal, Alexander van Oudenaarden posted to bistability noise stochasticity by margaritis on 2008-03-27 17:42:20 as along with 13 people and 1 group balabu lbnc stefanjanusz A_Olympia operon jjray gokhan dbikard bootsy qwermish fjvico osilander brianb GEB
	Discrete stochastic processes, replicator and Fokker-Planck equations of coevolutionary dynamics in finite and infinite populations [My Copy] (17 Mar 2008) by Jens C. Claussen posted to evolution stochasticity by Koh on 2008-03-24 05:32:23 as
	Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression [My Copy] Science, Vol. 319, No. 5861. (18 January 2008), pp. 339-343. by Juan M. Pedraza, Johan Paulsson posted to bursting fluctuations gene-expression noise stochasticity by margaritis on 2008-01-18 11:07:20 as along with 9 people inesdesantiago balicea cjeans heliopais roys sb_journal_club rschulz ddcttrl klo
	Fluctuations, pauses and backtracking in DNA transcription [My Copy] Biophys. J. (24 August 2007), biophysj.107.105767. by Margaritis Voliotis, Netta Cohen, Carmen Molina-Paris, Tanniemola Liverpool posted to backtracking fluctuations noise stochasticity transcription by margaritis on 2008-01-09 11:22:22 as
	Stochastic gene expression out-of-steady-state in the cyanobacterial circadian clock [My Copy] Nature, Vol. 450, No. 7173. (20 December 2007), pp. 1249-1252. by Jeffrey R. Chabot, Juan M. Pedraza, Prashant Luitel, Alexander van Oudenaarden posted to experiment gene-expression noise stochasticity by margaritis on 2008-01-08 11:50:03 as along with 5 people inesdesantiago austin balabu cactus kintoki
	Stochastic dynamics of invasion and fixation [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 74, No. 1. (2006), 011909. by Arne Traulsen, Martin A. Nowak, Jorge M. Pacheco posted to game stochasticity by Koh on 2007-11-09 15:17:27 as along with 2 people vtraag tuck
	Molecular level stochastic model for competence cycles in Bacillus subtilis [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 45. (6 November 2007), pp. 17582-17587. by Daniel Schultz, Ben, Jose N. Onuchic, Peter G. Wolynes posted to bsubtilis competence fluctuations noise stochasticity by margaritis on 2007-11-07 17:44:50 as along with 3 people jjray balabu lshaw
	Dissecting Timing Variability in Yeast Meiosis [My Copy] Cell, Vol. 131, No. 3. (2 November 2007), pp. 544-556. by Iftach Nachman, Aviv Regev, Sharad Ramanathan posted to experiment fluctuations meiosis noise stochasticity yeast by margaritis on 2007-11-07 17:36:48 as along with 2 people and 1 group dpollard balabu EisenLab
	Living with noisy genes: how cells function reliably with inherent variability in gene expression. [My Copy] Annual review of biophysics and biomolecular structure, Vol. 36 (2007), pp. 413-434. by Narendra Maheshri, Erin K. O'Shea posted to fluctuations noise review stochasticity by margaritis on 2007-11-01 14:16:52 as along with 6 people guhjy bertelsen Zephyrus marcio jjray madhadron
	Stochasticity and evolutionary stability [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 74, No. 2. (2006) by Arne Traulsen, Jorge M. Pacheco, Lorens A. Imhof posted to evolution stochasticity by Koh on 2007-10-12 03:48:22 as
	Symmetry and Stochastic Gene Regulation [My Copy] Physical Review Letters, Vol. 99, No. 10. (2007) by Alexandre F. Ramos, José E. M. Hornos posted to fluctuations gene-expression noise stochasticity theory by margaritis on 2007-10-05 12:40:56 as

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noise	71
fluctuations	60
gene-expression	45
theory	20
experiment	18
review	13
single-cell	12
bursting	8
yeast	8
dynamics	6
population	6
bsubtilis	5
transcription	5
2005	4
bistability	4
ecoli	4
evolution	4
gene	4
gene-networks	4
genetics	4
expression	3
extinction	3
gene_order	3
probability	3
promoter	3
algebra	2
demographic	2
environmental	2
excitability	2
fourstar	2
game	2
gene_expression	2
invasion	2
metabolic	2
model	2
operon	2
ppi	2
process	2
protein	2
resonance	2
single-molecule	2
spectra	2
stochastic_simulations	2
systems	2
threestar	2
1990	1
adaptivity	1
bacillus	1
backtracking	1
cell-cycle	1
cell_division	1
cells	1
chromatin	1
computational	1
describe	1
development	1
disease	1
drug	1
ellowitz	1
extrinsic	1
extrinsicnoise	1
fidelity	1
folding	1
gene_regulation	1
genealogy	1
geneexpression	1
gillespie	1
grn	1
information-retrieval	1
information-theory	1
intrinsicnoise	1
l-phage	1
lac-operon	1
logic	1
mathematical	1
meiosis	1
mrna	1
noise-frequency	1
nonlocality	1
optimization	1
perspectives	1
pharmacogenomic	1
phenotype	1
potential	1
qft	1
random-variables	1
ranking	1
regulation	1
regulatory_network	1
simulation	1
simulations	1
spatial	1
specificity	1
stemcells	1
swain	1
syntheticbiology	1
systems-biology	1
views	1
vision	1
web	1

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