Tag structure [more than 800 articles] Export

Recent papers classified by the tag structure.

	MUSTANG: A multiple structural alignment algorithm [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 64, No. 3. (2006), pp. 559-574. by Arun S. Konagurthu, James C. Whisstock, Peter J. Stuckey, Arthur M. Lesk posted to structure bioinformatics alignment by robfsouza on 2009-11-20 23:52:04 as along with 5 people and 3 groups karbak ana jwm rabio Thaverkamp structural_bioinformatics Bioinformatics Microbial-Ecology
	SitesIdentify: a protein functional site prediction tool [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 379. by Tracey Bray, Pedro Chan, Salim Bougouffa, Richard Greaves, Andrew Doig, Jim Warwicker posted to tool structure function by renatomilani on 2009-11-19 19:18:40 as along with 1 person and 1 group kshameer structural_bioinformatics
	Microstructural changes in casein supramolecules during acidification of skim milk [My Copy] J. Dairy Sci., Vol. 92, No. 12. (1 December 2009), pp. 5854-5867. by D. J. McMahon, H. Du, W. R. McManus, K. M. Larsen posted to supramolecule structure skim milk casein acidification by Tomste on 2009-11-19 08:40:33 as
	Structure and functional characterization of the atypical human kinase haspin [My Copy] Proceedings of the National Academy of Sciences (16 November 2009) by Jeyanthy Eswaran, Debasis Patnaik, Panagis Filippakopoulos, et al.Fangwei Wang, Ross L. Stein, James W. Murray, Jonathan M. G. Higgins, Stefan Knapp posted to structure protein-serine-threonine mitosis kinase human histone haspin by neils on 2009-11-18 23:03:40 as
	Low Complexity Regions behave as tRNA sponges to help co-translational folding of plasmodial proteins. [My Copy] FEBS letters (6 November 2009) by Magali Frugier, Tania Bour, Maya Ayach, Manuel A. Santos, Joëlle Rudinger-Thirion, Anne Théobald-Dietrich posted to structure plasmodium mrna low complexity co-translationaolding by saunders on 2009-11-18 17:08:10 as
	Control of translation by the conformation of messenger RNA. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 68, No. 3. (March 1971), pp. 570-573. by H. Fukami, K. Imahori posted to translation structure mrna accuracy by saunders on 2009-11-18 17:00:54 as
	The secondary structure of mRNAs from Escherichia coli: its possible role in increasing the accuracy of translation. [My Copy] Nucleic acids research, Vol. 13, No. 1. (11 January 1985), pp. 275-288. by E. G. Shpaer posted to translation structure secondary protein mrna by saunders on 2009-11-18 16:56:22 as
	The relationship between third-codon position nucleotide content, codon bias, mRNA secondary structure and gene expression in the drosophilid alcohol dehydrogenase genes Adh and Adhr. [My Copy] Genetics, Vol. 159, No. 2. (October 2001), pp. 623-633. by D. B. Carlini, Y. Chen, W. Stephan posted to translation structure mrna codon by saunders on 2009-11-18 16:49:06 as
	Statistical correlation between protein secondary structure and messenger RNA stem-loop structure. [My Copy] Biopolymers, Vol. 73, No. 1. (January 2004), pp. 16-26. by Mengwen Jia, Liaofu Luo, Ciquan Liu posted to structure stem secondary protein mrna loop by saunders on 2009-11-18 16:12:32 as along with 1 person bpcusack
	MONSSTER: a method for folding globular proteins with a small number of distance restraints. [My Copy] Journal of molecular biology, Vol. 265, No. 2. (17 January 1997), pp. 217-241. by J. Skolnick, A. Kolinski, A. R. Ortiz posted to structure restraints prediction by saunders on 2009-11-18 11:26:11 as
	Assembly of protein structure from sparse experimental data: an efficient Monte Carlo model. [My Copy] Proteins, Vol. 32, No. 4. (1 September 1998), pp. 475-494. by A. Kolinski, J. Skolnick posted to structure restraints prediction by saunders on 2009-11-18 11:23:49 as along with 2 people wilbur dgront
	Progress and challenges in protein structure prediction [My Copy] Curr. Opin. Struct. Biol. In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 342-348. by Yang Zhang posted to template structure review prediction free by saunders on 2009-11-18 11:02:15 as along with 11 people ameetsoni rodrigofaccioli jperkins newton1234 hadesnumb kgutwin chad_davis barry phoenixzxl marck zwang
	Vibrational Spectroscopy as a Probe of Structure and Dynamics in Liquid Water [My Copy] Chemical Reviews, Vol. 0, No. 0. (0000) by H. J. Bakker, J. L. Skinner posted to water structure spectroscopy by qshao on 2009-11-18 01:06:31 as
	On the Accuracy of Homology Modeling and Sequence Alignment Methods Applied to Membrane Proteins [My Copy] Biophysical Journal, Vol. 91, No. 2. (15 July 2006), pp. 508-517. by L. Forrest, C. Tang, B. Honig posted to substitution structure sequence protein modelling membrane database alignment by sebk on 2009-11-17 16:44:17 as
	EVA: Large-scale analysis of secondary structure prediction [My Copy] Proteins: Structure, Function, and Genetics, Vol. 45, No. S5. (2001), pp. 192-199. by Burkhard Rost, Volker A. Eyrich posted to structure secondary scale large eva analysis by saunders on 2009-11-17 14:41:39 as
	Backbone Dynamics of the Monomeric λ Repressor Denatured State Ensemble under Nondenaturing Conditions† [My Copy] Biochemistry, Vol. 46, No. 5. (1 February 2007), pp. 1141-1151. by Preeti Chugha, Terrence G. Oas posted to structure nmr native n-terminal methionine helix by saunders on 2009-11-17 10:17:28 as
	Structure of bacteriophage T4 lysozyme refined at 1.7 p resolution [My Copy] Journal of Molecular Biology, Vol. 193, No. 1. (05 January 1987), pp. 189-199. by L. Weaver, B. Matthews posted to t4 structure protein lysozyme folding crystal by ramalldf on 2009-11-17 02:19:00 as
	Direct inhibition of the NOTCH transcription factor complex. [My Copy] Nature, Vol. 462, No. 7270. (12 November 2009), pp. 182-188. by Raymond E. Moellering, Melanie Cornejo, Tina N. Davis, et al.Cristina Del Bianco, Jon C. Aster, Stephen C. Blacklow, Andrew L. Kung, D. Gary Gilliland, Gregory L. Verdine, James E. Bradner posted to transcription-factor structure pathway notch leukemia inhibitor by renatomilani on 2009-11-16 18:58:48 as along with 3 people gbloeb qshao cchand
	Common evolutionary trends for SINE RNA structures [My Copy] Trends in Genetics, Vol. 23, No. 1. (January 2007), pp. 26-33. by Feng-Jie Sun, Sophie Fleurdepine, Cecile Bousquet-Antonelli, Gustavo Caetano-Anolles, Jean-Marc Deragon posted to transposon structure sine rna evolution by operon on 2009-11-16 18:47:04 as along with 2 people and 2 groups timflutre dchughes G4ID Genetics-of-Gambling
	Supercooled liquid-like solvent in trypsin crystals: implications for crystal annealing and temperature-controlled X-ray radiation damage studies. [My Copy] Journal of synchrotron radiation, Vol. 12, No. Pt 3. (May 2005), pp. 310-317. by M. Weik, A. M. Schreurs, H. K. Leiros, G. Zaccai, R. B. Ravelli, P. Gros posted to structure methods crystallization cryo by martainn on 2009-11-16 17:57:21 as
	The prolyl isomerase PIN1: a pivotal new twist in phosphorylation signalling and disease. [My Copy] Nature reviews. Molecular cell biology, Vol. 8, No. 11. (November 2007), pp. 904-916. by Kun Ping P. Lu, Xiao Zhen Z. Zhou posted to structure pro-isomerization inhibitor by martainn on 2009-11-16 12:44:54 as
	A remote prolyl isomerization controls domain assembly via a hydrogen bonding network. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 30. (28 July 2009), pp. 12335-12340. by Ulrich Weininger, Roman P. Jakob, Barbara Eckert, Kristian Schweimer, Franz X. Schmid, Jochen Balbach posted to structure pro-isomerization phage assembly by martainn on 2009-11-16 12:13:24 as
	Bayesian power-spectrum inference for Large Scale Structure data [My Copy] (12 Nov 2009) by J. Jasche, F. S. Kitaura, B. D. Wandelt, T. A. Ensslin posted to structure statistics scale large cosmology beyesian arxiv analysis by futurephysicist on 2009-11-16 03:57:18 as
	TRIAS--An Algorithm for Mining Iceberg Tri-Lattices [My Copy] In ICDM '06: Proceedings of the Sixth International Conference on Data Mining (2006), pp. 907-911. by Robert Jaschke, Andreas Hotho, Christoph Schmitz, Bernhard Ganter, Gerd Stumme posted to tri-partite structure ls folksonomy dynamic by cgl on 2009-11-15 22:33:52 as
	Interaction between Plate Make and Protein in Protein Crystallisation Screening [My Copy] PLoS ONE, Vol. 4, No. 11. (16 November 2009), e7851. by Gordon J. King, Kai-En Chen, Gautier Robin, et al.Jade K. Forwood, Begoña Heras, Anil S. Thakur, Bostjan Kobe, Simon P. Blomberg, Jennifer L. Martin posted to structure screening protein methods crystallography by neils on 2009-11-15 22:25:34 as
	Visualization of scalar data defined on a structured grid-applications to petroleum research [My Copy] In VIS '90: Proceedings of the 1st conference on Visualization '90 (1990), pp. 281-288. by J. L. Pajon, V. Bui Tran posted to visualization structure data by varunvikas on 2009-11-15 16:37:17 as
	The role of DNA shape in protein\|[ndash]\|DNA recognition [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1248-1253. by Remo Rohs, Sean M. West, Alona Sosinsky, Peng Liu, Richard S. Mann, Barry Honig posted to structure f1000 dna bioinformatics by renatomilani on 2009-11-13 22:17:44 as along with 9 people gjuggler hagechouchin443 emptyhb sandersl Fernando_FF operon kintoki TRHvidsten djkt
	Efficient Method for Predicting Crystal Structures at Finite Temperature: Variable Box Shape Simulations [My Copy] Physical Review Letters, Vol. 103, No. 18. (2009), 188302. by Laura Filion, Matthieu Marechal, Bas van Oorschot, Daniël Pelt, Frank Smallenburg, Marjolein Dijkstra posted to structure simulation crystals binary by kedmond on 2009-11-13 15:20:31 as along with 1 person michaelbussmann
	Filamentous phage infection: crystal structure of g3p in complex with its coreceptor, the C-terminal domain of TolA. [My Copy] Structure (London, England : 1993), Vol. 7, No. 6. (15 June 1999), pp. 711-722. by J. Lubkowski, F. Hennecke, A. Plückthun, A. Wlodawer posted to structure phage periplasmic assembly by martainn on 2009-11-13 14:46:12 as
	Solution structure of the E.coli TolA C-terminal domain reveals conformational changes upon binding to the phage g3p N-terminal domain. [My Copy] Journal of molecular biology, Vol. 346, No. 4. (4 March 2005), pp. 1047-1057. by Christophe Deprez, Roland Lloubès, Marthe Gavioli, Dominique Marion, Françoise Guerlesquin, Laurence Blanchard posted to structure phage binding_mechanisms assembly by martainn on 2009-11-13 14:41:38 as
	Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. [My Copy] Journal of molecular biology, Vol. 120, No. 1. (25 March 1978), pp. 97-120. by J. Garnier, D. J. Osguthorpe, B. Robson posted to structure secondary predici inference bayesian by TLVincent on 2009-11-13 14:14:17 as
	Interaction between Intrinsically Disordered Proteins Frequently Occurs in a Human Protein–Protein Interaction Network [My Copy] Journal of Molecular Biology, Vol. 392, No. 5. (09 October 2009), pp. 1253-1265. by Kana Shimizu, Hiroyuki Toh posted to structure protein ppi interaction go disorder 13-nov-09 by bdessailly to the group Orengo Group Journal Picks on 2009-11-13 10:14:04 as along with 8 people jjray nzm ekotelnikova kiekyon tprpip higueruelo cabbagesofdoom reyez
	Compensated pathogenic deviations: Analysis of structural effects [My Copy] Journal of Molecular Biology (06 November 2009) by A. Baresic posted to structure pathogenic mutations missense disease compensatory 13-nov-09 by bdessailly to the group Orengo Group Journal Picks on 2009-11-13 09:59:02 as
	GTOP: a database of protein structures predicted from genome sequences. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 294-298. by Takeshi Kawabata, Satoshi Fukuchi, Keiichi Homma, et al.Motonori Ota, Jiro Araki, Takehiko Ito, Nobuyuki Ichiyoshi, Ken Nishikawa posted to structure protein mrna gtop database by saunders on 2009-11-12 18:33:15 as along with 1 person tny
	The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (January 2009) by Satoshi Fukuchi, Keiichi Homma, Shigetaka Sakamoto, et al.Hideaki Sugawara, Yoshio Tateno, Takashi Gojobori, Ken Nishikawa posted to structure protein mrna gtop database by saunders on 2009-11-12 18:32:14 as along with 2 people tprpip guhjy
	A brighter future for protein structure prediction [My Copy] Nature Structural & Molecular Biology, Vol. 6, No. 2. (01 February 1999), pp. 108-111. by Patrice Koehl, Michael Levitt posted to structure protein prediction holy grail by saunders on 2009-11-12 17:44:40 as
	Predicting protein three-dimensional structure [My Copy] Current Opinion in Biotechnology, Vol. 10, No. 6. (1 December 1999), pp. 583-588. by J. Moult posted to structure protein prediction holy grail by saunders on 2009-11-12 17:43:59 as
	Progress in protein structure prediction. [My Copy] Current opinion in structural biology, Vol. 7, No. 3. (June 1997), pp. 377-387. by D. T. Jones posted to structure protein prediction holy grail by saunders on 2009-11-12 17:40:00 as along with 1 person j3xucite
	Price Competition in a Channel Structure with a Common Retailer [My Copy] Marketing Science, Vol. 10, No. 4. (1991), pp. 271-296. by S. Chan Choi posted to with structure retailer common channel by valorbobby on 2009-11-12 16:31:58 as along with 1 person toomash
	The selection of acceptable protein mutations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 24. (12 June 2007), pp. 10080-10085. by Rajkumar Sasidharan, Cyrus Chothia posted to structure fold-evolution alignment 1barrel by martainn on 2009-11-12 15:52:05 as along with 3 people aalibes gpalidwor zwang
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted to structure fold-evolution evolution alignment 1barrel by martainn on 2009-11-12 14:50:55 as along with 13 people and 6 groups ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	The effect of sequence evolution on protein structural divergence. [My Copy] Molecular biology and evolution, Vol. 26, No. 5. (1 May 2009), pp. 1055-1065. by Simon G. Williams, Simon C. Lovell posted to structure fold-evolution alignment 1barrel by martainn on 2009-11-12 14:27:05 as along with 3 people robfsouza djkt bpcusack
	Protein structure prediction begins well but ends badly [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 999A. (2009), NA. by Rhodri Saunders, Charlotte M. Deane posted to tertiary structure secondary protein prediction casp bias by saunders to the group OPIG on 2009-11-12 14:21:06 as
	Predicting new molecular targets for known drugs [My Copy] Nature, Vol. 462, No. 7270. (01 November 2009), pp. 175-181. by Michael J. Keiser, Vincent Setola, John J. Irwin, et al.Christian Laggner, Atheir I. Abbas, Sandra J. Hufeisen, Niels H. Jensen, Michael B. Kuijer, Roberto C. Matos, Thuy B. Tran, Ryan Whaley, Richard A. Glennon, Jerome Hert, Kelan L. H. Thomas, Douglas D. Edwards, Brian K. Shoichet, Bryan L. Roth posted to structure prediction drug by zwang on 2009-11-12 08:53:52 as along with 14 people and 1 group venancio okapi ahmetbakan zufar pablocarb TRHvidsten phoenixzxl qshao Yanno mnishimu tmmurali sjcockell seb1 abhishek_tiwari Journal picks
	Reconstructing Genetic Ancestry Blocks in Admixed Individuals [My Copy] Vol. 79, No. 1. (1 July 2006), pp. 1-12. by Hua Tang, Marc Coram, Pei Wang, Xiaofeng Zhu, Neil Risch posted to structure sfa by engelhardt on 2009-11-11 21:24:23 as
	Using DNA to track the origin of the largest ivory seizure since the 1989 trade ban [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 10. (6 March 2007), pp. 4228-4233. by Samuel K. Wasser, Celia Mailand, Rebecca Booth, et al.Benezeth Mutayoba, Emily Kisamo, Bill Clark, Matthew Stephens posted to structure sfa by engelhardt on 2009-11-11 21:17:35 as
	Structure of Escherichia coli Hfq bound to polyriboadenylate RNA. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (4 November 2009) by Todd M. Link, Poul Valentin-Hansen, Richard G. Brennan posted to structure small-motifs rna_binding rna by martainn on 2009-11-11 15:55:18 as
	High-resolution structure of the rotor ring of a proton-dependent ATP synthase [My Copy] Nature Structural & Molecular Biology, Vol. 16, No. 10. (27 September 2009), pp. 1068-1073. by Denys Pogoryelov, Ozkan Yildiz, Jose D. Faraldo-Gomez, Thomas Meier posted to structure f1fo atpase by martainn on 2009-11-11 14:54:23 as along with 1 person tux2000
	FINDSITE: a combined evolution/structure-based approach to protein function prediction [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 378-391. by Jeffrey Skolnick, Michal Brylinski posted to structure protein prediction function evolution by davidmam on 2009-11-11 14:47:00 as along with 8 people and 1 group jperkins reyez TRHvidsten iaolier dimka gwallau operon idoerg Orengo Group Journal Picks
	Evolutionary genomics of the HAD superfamily: understanding the structural adaptations and catalytic diversity in a superfamily of phosphoesterases and allied enzymes. [My Copy] Journal of molecular biology, Vol. 361, No. 5. (1 September 2006), pp. 1003-1034. by A. Maxwell Burroughs, Karen N. Allen, Debra Dunaway-Mariano, L. Aravind posted to superfolds structure rna fold-evolution exosome evolution by martainn on 2009-11-11 12:26:30 as along with 3 people robfsouza tny christiw

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protein	1106
rna	661
review	406
prediction	392
binding	338
evolution	322
bioinformatics	300
algorithm	243
secondary	207
modelling	190
function	180
alignment	179
nmr	177
sequence	164
database	153
dynamics	153
membrane	152
water	152
complexes	136
interaction	134
networks	133
network	131
embl	115
docking	92
dna	90
classification	88
proj_assembly	86
crystal	83
folding	82
modeling	82
ribosome	80
software	80
fold-evolution	77
gpcr	76
simulation	74
colloids	72
theory	72
complex	71
crystallography	71
domain	71
analysis	70
disorder	70
classic	69
statistics	67
ppi	66
experimental	63
social	60
design	58
experiment	57
model	57
population	57
rhodopsin	57
molecular	55
helix	53
virus	52
scp	51
algorithms	49
activation	48
community	47
motif	47
transmembrane	46
glass	45
amyloid	44
biophysics	44
fold	44
learning	43
mutation	43
yeast	43
chemistry	42
clustering	42
drug	42
membrane_proteins	41
assembly	40
mechanism	40
paper1	40
bayesian	38
coiled-coils	38
pseudoknots	38
sp-a	38
proj_interprets	37
biology	36
interface	36
ligand	36
proj_disocons	36
data	35
genomics	35
influenza	35
electrostatics	34
neural	34
chemical	33
graph	33
graphene	33
x-ray	33
mc1r	32
channel	31
data_integration	31
em	31
gene	31
of	31
recognition	31

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