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Recent papers classified by the tag structure-prediction.

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	Prediction of membrane protein structures with complex topologies using limited constraints [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1409-1414. by P. Barth, B. Wallner, D. Baker posted to structure-prediction imp by rph on 2009-10-08 20:26:56 as along with 10 people and 2 groups dgront sebk barry krapnik viktor21614 paulschlesinger zwang apaydin agrossfield amishp OPIG structural_bioinformatics
	Epitopia: a web-server for predicting B-cell epitopes [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (14 September 2009), 287. by Nimrod Rubinstein, Itay Mayrose, Eric Martz, Tal Pupko posted to web_server structure-prediction structure protein_structure protein_sequence prediction_tools immunoinformatics immunogenicity epitope_prediction epitope computational_tool cell_epitopes b_cell by niallhaslam on 2009-09-16 12:08:27 as
	Macromolecular Modeling with Rosetta [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008), pp. 363-382. by Rhiju Das, David Baker posted to structure-prediction rosetta review by bmduggan on 2009-09-10 02:20:16 as along with 10 people dgront choonpeng mijam kgutwin carlk phoenixzxl krapnik flbarroso saunders gisle
	Comparative protein modelling by satisfaction of spatial restraints. [My Copy] Journal of molecular biology, Vol. 234, No. 3. (5 December 1993), pp. 779-815. by A. Sali, T. L. Blundell posted to structure-prediction modeller by bmduggan on 2009-09-08 18:26:25 as along with 17 people krapnik pjcite newton1234 viktor21614 mijam dimka vavi bicko chad_davis ttjoseph skhadar dgront rabio massivemayhem medic0747 sebk granujilla
	High-resolution structure prediction and the crystallographic phase problem [My Copy] Nature, Vol. 450, No. 7167. (14 October 2007), pp. 259-264. by Bin Qian, Srivatsan Raman, Rhiju Das, et al.Philip Bradley, Airlie J. McCoy, Randy J. Read, David Baker posted to structure-prediction rosetta molecular-dynamics by bmduggan on 2009-09-02 19:58:03 as along with 16 people and 2 groups newton1234 apaydin aheilbut jwm eckart_bindewald ffranca dgront massivemayhem cjeans zwang cactus sobolevnrm boris_aguilar Ema chenway ardalby baker-group OPIG
	Predicting transmembrane protein topology with a hidden markov model: application to complete genomes1 [My Copy] Journal of Molecular Biology, Vol. 305, No. 3. (19 January 2001), pp. 567-580. by Anders Krogh, Björn Larsson, Gunnar von Heijne, Erik L. L. Sonnhammer posted to das prediction structure-prediction transmembrane by niallhaslam on 2009-07-13 16:05:41 as along with 11 people azazello tfuji katholt thaliana bjorns andreasauerwein j3xucite happy_manatee massivemayhem twenta sebk
	PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by M. Amico, M. Finelli, I. Rossi, et al.A. Zauli, A. Elofsson, H. Viklund, G. von Heijne, D. Jones, A. Krogh, P. Fariselli, P. Luigi Martelli, R. Casadio posted to das modular-architecture structure structure-prediction transmembrane webservices by niallhaslam on 2009-07-13 16:02:59 as along with 1 person xingxu
	RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures [My Copy] Nucl. Acids Res. (5 October 2007), gkm786. by Mariusz Popenda, Marek Blazewicz, Marta Szachniuk, Ryszard W. Adamiak posted to rna structure-prediction by bmduggan on 2009-07-09 20:52:20 as
	The unfoldomics decade: an update on intrinsically disordered proteins. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by A. K. Dunker, C. J. Oldfield, J. Meng, et al.P. Romero, J. Y. Yang, J. W. Chen, V. Vacic, Z. Obradovic, V. N. Uversky posted to disorder structure-prediction by niallhaslam on 2009-07-09 17:03:47 as along with 6 people kiekyon robfsouza carlosjavierna guhjy higueruelo chad_davis
	Close encounters of the third kind: disordered domains and the interactions of proteins [My Copy] BioEssays, Vol. 31, No. 3. (3 March 2009), pp. 328-335. by Peter Tompa, Monika Fuxreiter, Christopher J. Oldfield, Istvan Simon, A. Keith Dunker, Vladimir N. Uversky posted to disorder structure-prediction by niallhaslam on 2009-07-09 16:30:03 as along with 3 people kiekyon higueruelo zwang
	A careful disorderliness in the proteome: Sites for interaction and targets for future therapies [My Copy] FEBS Letters, Vol. 582, No. 8. (09 April 2008), pp. 1271-1275. by R RUSSELL,, T GIBSON, posted to disorder drug-target structure-prediction by niallhaslam on 2009-07-09 16:29:31 as along with 8 people eannaokeefe cat_hutchinson68 guhjy Evangelia robrussell higueruelo kluck chad_davis
	The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data [My Copy] Nature, Vol. 452, No. 7183. (6 March 2008), pp. 51-55. by Marc Parisien, François Major posted to rna sequence-analysis structure-prediction by bmduggan on 2009-06-02 19:52:59 as along with 7 people heliopais physics puranjoy_b zwang austin elfar reyez
	Revolutions in RNA Secondary Structure Prediction [My Copy] Journal of Molecular Biology, Vol. 359, No. 3. (9 June 2006), pp. 526-532. by David H. Mathews posted to rna sequence-analysis structure-prediction by bmduggan on 2009-06-02 14:55:55 as along with 12 people and 2 groups rb_india heliopais marcius arcticrasta penka Eonwe cthachuk emidio_capriotti physics maralena winterschlaefer austin BioinfoCIPF SGU-CIPF
	Basic charge clusters and predictions of membrane protein topology. [My Copy] Journal of chemical information and computer sciences, Vol. 42, No. 3. (n 2002), pp. 620-632. by D. Juretić, L. Zoranić, D. Zucić posted to das split structure-prediction transmembrane by niallhaslam on 2009-02-12 11:06:17 as
	The DISOPRED server for the prediction of protein disorder. [My Copy] Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2138-2139. by J. J. Ward, L. J. McGuffin, K. Bryson, B. F. Buxton, D. T. Jones posted to disorder iup prediction structure structure-prediction by niallhaslam on 2009-02-12 10:07:00 as along with 1 person chad_davis
	Automated protein structure homology modeling: a progress report. [My Copy] Pharmacogenomics, Vol. 5, No. 4. (June 2004), pp. 405-416. by J. Kopp, T. Schwede posted to homology protein review structure-prediction by dfgreen on 2009-01-09 02:53:00 as
	Protein structure prediction [My Copy] Current Opinion in Chemical Biology, Vol. 5, No. 1. (1 February 2001), pp. 51-56. by B. Al-Lazikani posted to homology protein review structure-prediction by dfgreen on 2009-01-09 02:51:34 as along with 2 people carlosjavierna granujilla
	Predicting protein disorder by analyzing amino acid sequence. [My Copy] BMC genomics, Vol. 9 Suppl 2 (2008) by J. Y. Yang, M. Q. Yang posted to disorder protein structure-prediction by niallhaslam on 2008-12-18 10:14:57 as
	The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000160. by Marco Punta, Yanay Ofran posted to protein sequence-analysis structure-prediction by niallhaslam on 2008-12-17 09:28:16 as along with 21 people and 1 group GustavoLacerda ucbcjbm pansapiens kiekyon Thaverkamp daforerog Zalanszabo bpcusack Katje joseph_x_zhou taguchi sjcockell markchen ptrobajo chad_davis druvus mdstobbe giovenko nilanjanroy reyez GeeSharpMinor microbiology_nijmegen
	alpha-Helical Topology Prediction and Generation of Distance Restraints in Membrane Proteins [My Copy] Biophys. J., Vol. 95, No. 11. (1 December 2008), pp. 5281-5295. by Scott R. Mcallister, Christodoulos A. Floudas posted to gpcr structure-prediction by agrossfield on 2008-11-19 14:58:51 as along with 1 person sebk
	Identification of Intrinsically Unstructured Proteins using hierarchical classifier. [My Copy] International journal of data mining and bioinformatics, Vol. 2, No. 2. (2008), pp. 121-133. by J. Y. Yang, M. Q. Yang posted to benchmarking disorder domains structure-prediction by niallhaslam on 2008-10-24 10:25:12 as
	PIGS: Automatic prediction of antibody structures [My Copy] Bioinformatics (19 July 2008), btn341. by Paolo Marcatili, Alessandra Rosi, Anna Tramontano posted to antibodies antibody antigen-prediction structure-prediction by niallhaslam on 2008-09-16 14:41:11 as along with 1 person zwang
	New approaches in molecular structure prediction [My Copy] Biophysical Chemistry, Vol. 59, No. 1-2. (7 March 1996), pp. 1-32. by Gerald Böhm posted to protein-folding structure-prediction by aleperd on 2008-08-13 21:50:01 as
	PURE: a webserver for the prediction of domains in unassigned regions in proteins [My Copy] BMC Bioinformatics, Vol. 9 (14 June 2008), 281. by Chilamakuri C. S. Reddy, Shameer Khader, Bernard O. Offmann, Ramanthan Sowdhamini posted to domains modular-architecture protein-design structure-prediction by niallhaslam on 2008-06-25 09:19:12 as along with 1 person neils
	TOPDOM: database of domains and motifs with conservative location in transmembrane proteins. [My Copy] Bioinformatics (Oxford, England) (23 April 2008) by Gábor E E. Tusnády, Lajos Kalmár, Hédi Hegyi, Péter Tompa, István Simon posted to disorder domains modular-architecture protein-design structure-prediction by niallhaslam on 2008-06-25 09:09:42 as along with 3 people cabbagesofdoom gulkur guhjy
	Prediction of disordered regions in proteins based on the meta approach [My Copy] Bioinformatics (20 April 2008), btn195. by Takashi Ishida, Kengo Kinoshita posted to disorder partially-structured structure-prediction by niallhaslam on 2008-06-25 09:08:21 as along with 1 person and 1 group chad_davis structural_bioinformatics
	A simple physical model for binding energy hot spots in proteinâprotein complexes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 22. (29 October 2002), pp. 14116-14121. by Tanja Kortemme, David Baker posted to structure-prediction by skoddet to the group Nielsen group on 2008-06-20 15:35:40 as along with 8 people chemrahul82 onufriev oceanwind lna jwm bicko cjeans hmk
	Computational Alanine Scanning of Protein-Protein Interfaces [My Copy] Sci. STKE, Vol. 2004, No. 219. (10 February 2004), pl2. by Tanja Kortemme, David E. Kim, David Baker posted to structure-prediction by skoddet on 2008-06-20 15:34:45 as along with 8 people and 6 groups chemrahul82 onufriev pablocarb bicko barry sangeetha blackbart joergkurtwegner structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics insilicodrug
	SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non synonymous SNPs. [My Copy] Bioinformatics (29 June 2006) by Joke Reumers, Sebastian Maurer-Stroh, Joost Schymkowitz, Frederic Rousseau posted to structure-prediction by skoddet to the group Nielsen group on 2008-06-20 15:33:38 as along with 4 people and 2 groups chad_davis caporaso massivemayhem cat_worth structural_bioinformatics biomedical-nlp
	Local knowledge helps determine protein structures [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4533-4534. by Michael R. Gryk, Jeffrey C. Hoch posted to nmr structure-prediction by skoddet on 2008-04-11 10:51:06 as
	A partially structured region of a largely unstructured protein, Plasmodium falciparum merozoite surface protein 2 (MSP2), forms amyloid-like fibrils. [My Copy] Journal of peptide science : an official publication of the European Peptide Society, Vol. 13, No. 12. (December 2007), pp. 839-848. by X. Yang, C. G. Adda, D. W. Keizer, et al.V. J. Murphy, M. M. Rizkalla, M. A. Perugini, D. C. Jackson, R. F. Anders, R. S. Norton posted to disorder domains modular-architecture partially-structured structure-prediction by niallhaslam on 2008-04-02 11:23:35 as
	Review: Protein Secondary Structure Prediction Continues to Rise [My Copy] Journal of Structural Biology, Vol. 134, No. 2-3. (May 2001), pp. 204-218. by Burkhard Rost posted to proteins review secondary-structures structure-prediction by Cristiano on 2008-01-23 16:45:26 as along with 1 person granujilla
	Benchmarking template selection and model quality assessment for high-resolution comparative modeling [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by M. I. Sadowski, D. T. Jones posted to structure-prediction by bicko on 2008-01-09 15:48:53 as along with 4 people j3xucite chad_davis massivemayhem granujilla
	Intrinsically disordered protein from a pathogenic mesophile Mycobacterium tuberculosis adopts structured conformation at high temperature. [My Copy] Proteins (14 November 2007) by Niti Kumar, Swati Shukla, Sanjiv Kumar, et al.Anju Suryawanshi, Uma Chaudhry, Srinivasan Ramachandran, Souvik Maiti posted to disorder structure-prediction by niallhaslam on 2007-11-26 09:52:29 as along with 1 person sanjiv856
	The modular organization of domain structures: insights into protein-protein binding [My Copy] PLoS Computational Biology, Vol. preprint, No. 2007. (1 October 2007), e239.eor. by Del, Pablo Carbonell posted to domains modular-architecture protein protein-protein structure-prediction by niallhaslam on 2007-11-15 12:50:59 as
	Antibody-protein interactions: benchmark datasets and prediction tools evaluation. [My Copy] BMC structural biology, Vol. 7 (02 October 2007), 64. by J. V. Ponomarenko, P. E. Bourne posted to antibody benchmarking epitope-selection protein-protein structure-prediction by niallhaslam on 2007-11-06 10:05:19 as along with 1 person guhjy
	Predicting intrinsic disorder from amino acid sequence. [My Copy] Proteins, Vol. 53 Suppl 6 (2003), pp. 566-572. by Z. Obradovic, K. Peng, S. Vucetic, P. Radivojac, C. J. Brown, A. K. Dunker posted to disorder structure-prediction by niallhaslam on 2007-09-24 11:17:33 as along with 1 person carlosjavierna
	Intrinsic disorder and protein function. [My Copy] Biochemistry, Vol. 41, No. 21. (28 May 2002), pp. 6573-6582. by A. K. Dunker, C. J. Brown, J. D. Lawson, L. M. Iakoucheva, Z. Obradović posted to disorder protein structure-prediction by niallhaslam on 2007-09-24 11:10:25 as along with 4 people carlosjavierna pansapiens allmensch Evangelia
	Inferring function using patterns of native disorder in proteins. [My Copy] PLoS Comput Biol, Vol. 3, No. 8. (24 August 2007) by A. Lobley, M. B. Swindells, C. A. Orengo, D. T. Jones posted to disorder linear-motif protein structure-prediction by niallhaslam on 2007-09-24 10:41:21 as
	Natively unstructured regions in proteins identified from contact predictions. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 18. (15 September 2007), pp. 2376-2384. by Avner Schlessinger, Marco Punta, Burkhard Rost posted to disorder structure-prediction by niallhaslam on 2007-09-18 10:15:49 as along with 1 person tcschen
	Residue-rotamer-reduction algorithm for the protein side-chain conformation problem [My Copy] Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 188-194. by Wei Xie, Nikolaos V. Sahinidis posted to side-chain-prediction structure-prediction by bicko on 2007-01-09 12:22:32 as along with 4 people and 2 groups dfgreen marcius bluvsh1 carlk BioinfoCIPF SGU-CIPF
	A graph-theory algorithm for rapid protein side-chain prediction. [My Copy] Protein Sci, Vol. 12, No. 9. (September 2003), pp. 2001-2014. by A. A. Canutescu, A. A. Shelenkov, R. L. Dunbrack posted to proteins-as-graphs side-chain-prediction structure-prediction by bicko on 2007-01-09 12:21:24 as along with 11 people oceanwind mcbla karbak nigham blackbart bluvsh1 rsantana mijam jwm carlk newton1234
	Progress over the first decade of CASP experiments [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. S7. (26 September 2005), pp. 225-236. by Andriy Kryshtafovych, Česlovas Venclovas, Krzysztof Fidelis, John Moult posted to 1st-yr-report casp review structure-prediction by bicko on 2006-06-30 02:01:38 as along with 5 people and 2 groups saunders marcius ffranca schuylrp granujilla BioinfoCIPF SGU-CIPF
	Docking of protein models. [My Copy] Protein Sci, Vol. 11, No. 8. (August 2002), pp. 1888-1896. by A. Tovchigrechko, C. A. Wells, I. A. Vakser posted to docking-applications docking-benchmark structure-prediction by bicko on 2006-06-21 15:03:41 as
	Functional Coverage of the Human Genome by Existing Structures, Structural Genomics Targets, and Homology Models. [My Copy] PLoS Comput Biol, Vol. 1, No. 3. (19 August 2005) by Lei Xie, Philip E E. Bourne posted to structural-genomics structure-prediction by bicko on 2006-02-20 14:06:32 as along with 2 people and 3 groups marcius caporaso biomedical-nlp BioinfoCIPF SGU-CIPF
	Derivation of rules for comparative protein modeling from a database of protein structure alignments. [My Copy] Protein Sci, Vol. 3, No. 9. (September 1994), pp. 1582-1596. by A. Sali, J. P. Overington posted to blundell-group structure-prediction by bicko on 2006-02-16 14:26:24 as along with 2 people and 4 groups ana marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Rosetta predictions in CASP5: successes, failures, and prospects for complete automation. [My Copy] Proteins, Vol. 53 Suppl 6 (2003), pp. 457-468. by P. Bradley, D. Chivian, J. Meiler, et al.K. M. Misura, C. A. Rohl, W. R. Schief, W. J. Wedemeyer, O. Schueler-Furman, P. Murphy, J. Schonbrun, C. E. Strauss, D. Baker posted to casp structure-prediction by bicko on 2005-10-17 16:06:54 as
	SWISS-MODEL: An automated protein homology-modeling server. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3381-3385. by T. Schwede, J. Kopp, N. Guex, M. C. Peitsch posted to bioinformatics structure-prediction tool by bpb on 2005-09-30 15:43:42 as along with 9 people krapnik flbarroso shacko sebk ffranca dgront gelack Haggan granujilla
	GlyProt: in silico glycosylation of proteins. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by A. Bohne-Lang, C. W. von der Lieth posted to bioinformatics computational glycosylation structure-prediction by bpb on 2005-09-26 11:19:59 as along with 2 people and 2 groups marcius csardas BioinfoCIPF SGU-CIPF
	Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 34, No. 1. (1999), pp. 82-95. by Kim T. Simons, Ingo Ruczinski, Charles Kooperberg, Brian A. Fox, Chris Bystroff, David Baker posted to popcorn rosetta structure-prediction by bpb on 2005-06-27 16:04:01 as along with 2 people paddydu hmk

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disorder	14
protein	7
domains	5
modular-architecture	5
review	5
das	3
rna	3
rosetta	3
sequence-analysis	3
structure	3
transmembrane	3
antibody	2
benchmarking	2
bioinformatics	2
blundell-group	2
casp	2
homology	2
partially-structured	2
prediction	2
protein-design	2
protein-protein	2
side-chain-prediction	2
1st-yr-report	1
antibodies	1
antigen-prediction	1
b_cell	1
cell_epitopes	1
classics	1
computational	1
computational_tool	1
docking-applications	1
docking-benchmark	1
drug-target	1
epitope	1
epitope-selection	1
epitope_prediction	1
glycosylation	1
gpcr	1
immunogenicity	1
immunoinformatics	1
imp	1
iup	1
linear-motif	1
modeller	1
molecular-dynamics	1
nmr	1
popcorn	1
prediction_tools	1
protein-folding	1
protein_sequence	1
protein_structure	1
proteins	1
proteins-as-graphs	1
secondary-structures	1
split	1
structural-genomics	1
tool	1
web_server	1
webservices	1

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