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Tag syntheticbiology [67 articles]

Recent papers classified by the tag syntheticbiology.
  • Noise Propagation in Gene Networks
    Science, Vol. 307, No. 5717. (25 March 2005), pp. 1965-1969.
    by Juan M Pedraza, Alexander van Oudenaarden
    posted to avano_lab expression gene genecircuits geneticnetworks genevariation networks noise stochastic syntheticbiology by samal on 2006-08-11 09:49:05 as ** along with 12 people rklancer snuppepuppan JKelly555 madhadron jiyu mhucka timflutre margaritis brianb suizan jiny dylanwalker
  • Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein
    Nature Biotechnology, Vol. 22, No. 12. (21 November 2004), 1567.
    by Nathan C Shaner, Robert E Campbell, Paul A Steinbach, Ben NG Giepmans, Amy E Palmer, Roger Y Tsien
    posted to fluorescentreporter syntheticbiology by JKelly555 on 2006-05-29 22:46:09 as read along with 6 people and 3 groups abbles raizada lmcf eeruowl rodney austin Raizada-Lab UFS Kopelman_Group
  • Gene regulation at the single-cell level.
    Science, Vol. 307, No. 5717. (25 March 2005), pp. 1962-1965.
    by N Rosenfeld, JW Young, U Alon, PS Swain, MB Elowitz
    posted to syntheticbiology by JKelly555 on 2006-03-21 01:42:22 as **** along with 13 people rklancer snuppepuppan kentsis Toze bayesian balicea balabu comb mhucka timflutre margaritis csgillespie vladimirov
  • Essential genes of a minimal bacterium
    PNAS, Vol. 103, No. 2. (10 January 2006), pp. 425-430.
    by John I Glass, Nacyra Assad-Garcia, Nina Alperovich, Shibu Yooseph, Matthew R Lewis, Mahir Maruf, Clyde A Hutchison, Hamilton O Smith, Craig J Venter
    posted to minimalgenome syntheticbiology by JKelly555 on 2006-03-09 00:57:28 as ***** along with 9 people and 2 groups jwm balicea hillevi famoreira nurban westoll kevinchannon stringertheory mcox Radiation_Damage Stressosome
  • Environmentally controlled invasion of cancer cells by engineered bacteria.
    J Mol Biol, Vol. 355, No. 4. (27 January 2006), pp. 619-627.
    by JC Anderson, EJ Clarke, AP Arkin, CA Voigt
    posted to ecoli syntheticbiology by JKelly555 on 2006-03-01 03:29:19 as **** along with 6 people and 4 groups rklancer imouthesmp marcius samjlord rodney heliopais BioinfoCIPF SGU-CIPF moernerlab Kopelman_Group
  • Directed evolution of RuBisCO hypermorphs through genetic selection in engineered E.coli
    Protein Engineering, Design and Selection, Vol. 19, No. 3. (March 2006), pp. 113-119.
    by Monal R Parikh, Dina N Greene, Kristen K Woods, Ichiro Matsumura
    posted to biology ecoli energy synthetic syntheticbiology by JKelly555 on 2006-06-05 20:42:48 as **** along with 1 person matzke
  • Tuning genetic control through promoter engineering.
    Proc Natl Acad Sci U S A (25 August 2005)
    by Hal Alper, Curt Fischer, Elke Nevoigt, Gregory Stephanopoulos
    posted to syntheticbiology by JKelly555 on 2006-05-19 19:56:31 as ** along with 1 person rklancer
  • Structure and functional analysis of a marine bacterial carotenoid biosynthesis gene cluster and astaxanthin biosynthetic pathway proposed at the gene level
    J. Bacteriol., Vol. 177, No. 22. (1 November 1995), pp. 6575-6584.
    by N Misawa, Y Satomi, K Kondo, A Yokoyama, S Kajiwara, T Saito, T Ohtani, W Miki
    posted to ecoli energy syntheticbiology by JKelly555 on 2006-06-03 07:46:14 as ****
  • Deoxyribozymes that recode sequence information.
    Nucleic Acids Res, Vol. 34, No. 8. (2006), pp. 2166-2172.
    by JJ Tabor, M Levy, AD Ellington
    posted to ecoli rna syntheticbiology by JKelly555 on 2006-06-06 20:40:53 as **** along with 1 person eckart_bindewald
  • From systems biology to synthetic biology
    Molecular Systems Biology, Vol. 1, No. 1. (29 March 2005), pp. msb4100007-E1-msb4100007-E2.
    by George M Church
    posted to syntheticbiology systemsbiology thoughtleaders by jasonbobe on 2007-08-03 06:08:57 as read along with 4 people and 2 groups Borelli rhem1224 biosv tvdbulck TCR_Signaling SysbioMPI-TCells
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to design excellent promoter rules syntheticbiology by austin on 2007-12-30 03:05:27 as read along with 14 people and 2 groups Retchless tmmurali dpollard balicea kengg dbikard margaritis lusk cjeans zwang discreteonyxorb cabbagezs Ema tresch EisenLab SynBioSys
  • Synthetic cooperation in engineered yeast populations.
    Proc Natl Acad Sci U S A, Vol. 104, No. 6. (6 February 2007), pp. 1877-1882.
    by W Shou, S Ram, JM Vilar
    posted to syntheticbiology by austin on 2008-06-29 01:27:08 as read along with 2 people dbikard fishtank
  • RNA synthetic biology
    Nature Biotechnology, Vol. 24, No. 5. (05 May 2006), pp. 545-554.
    by Farren J Isaacs, Daniel J Dwyer, James J Collins
    posted to rna syntheticbiology by austin on 2008-07-11 21:54:51 as read along with 6 people and 4 groups rklancer lingchong marcius balabu dbikard grahamc BioinfoCIPF SGU-CIPF Centre de Recherches Interdisciplinaires SynBioSys
  • Noise-limited frequency signal transmission in gene circuits.
    Biophys J (17 August 2007)
    by Cheemeng Tan, Faisal Reza, Lingchong You
    posted to noise syntheticbiology by austin on 2007-08-27 01:14:14 as **
  • Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to networks rewiring syntheticbiology by austin on 2008-06-16 01:29:15 as read along with 18 people and 4 groups aalibes tmmurali dullhunk neils cmzmasek AbnerCYH josedavid biehl caseybrown Garamonfok hryk dbikard cactus margaritis chad_davis michaelbarton aheilbut zwang GEB Centre de Recherches Interdisciplinaires SynBioSys BergmanLab
  • notes An in vivo selection system for homing endonuclease activity.
    Nucleic acids research, Vol. 30, No. 7. (1 April 2002)
    by M Gruen, K Chang, I Serbanescu, DR Liu
    posted to homingendonuclease parts syntheticbiology by austin on 2008-06-29 01:31:29 as read
  • An artificial riboswitch for controlling pre-mRNA splicing
    RNA, Vol. 11, No. 11. (1 November 2005), pp. 1667-1677.
    by Dong-Suk Kim, Veronica Gusti, Sailesh G Pillai, Rajesh K Gaur
    posted to riboswitch splicing syntheticbiology theophylline by austin on 2008-03-11 01:46:16 as read
  • Setting the standard in synthetic biology
    Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 771-774.
    by Adam Arkin
    posted to perspective syntheticbiology by austin on 2008-08-18 02:22:28 as read along with 3 people marck dbikard grahamc
  • The economics of synthetic biology
    Mol Syst Biol, Vol. 3 (5 June 2007)
    by Joachim Henkel, Stephen M Maurer
    posted to syntheticbiology by austin on 2007-08-27 02:00:43 as read
  • Synthetic biology projects in vitro
    Genome Res., Vol. 17, No. 1. (1 January 2007), pp. 1-6.
    by Anthony C Forster, George M Church
    posted to syntheticbiology by austin on 2008-06-29 01:36:14 as read along with 3 people Olaf_Ilzins kjedler grahamc
  • Engineering synthetic signaling proteins with ultrasensitive input/output control
    Nature Biotechnology, Vol. 25, No. 6. (21 May 2007), pp. 660-662.
    by John E Dueber, Ethan A Mirsky, Wendell A Lim
    posted to switch syntheticbiology by austin on 2008-07-11 22:30:44 as read
  • Engineered gene circuits.
    Nature, Vol. 420, No. 6912. (14 November 2002), pp. 224-230.
    by J Hasty, D McMillen, JJ Collins
    posted to review syntheticbiology by austin on 2008-08-17 03:13:10 as read along with 6 people rklancer lna balicea sharatjv dbikard discreteonyxorb
  • Vitamin H-regulated transgene expression in mammalian cells
    Nucl. Acids Res., Vol. 35, No. 17. (27 September 2007), e116.
    by Wilfried Weber, William Bacchus, Daoud-El, Martin Fussenegger
    posted to syntheticbiology by austin on 2007-12-26 01:04:37 as read along with 1 person jyuh
  • Construction of a genetic toggle switch in Escherichia coli.
    Nature, Vol. 403, No. 6767. (20 January 2000), pp. 339-342.
    by TS Gardner, CR Cantor, JJ Collins
    posted to switch syntheticbiology by austin on 2008-07-11 22:26:15 as read along with 3 people rklancer satsumakenji tvdbulck
  • Genetic parts to program bacteria.
    Curr Opin Biotechnol, Vol. 17, No. 5. (October 2006), pp. 548-557.
    by CA Voigt
    posted to syntheticbiology by austin on 2007-09-11 22:46:00 as read
  • Accurate prediction of gene feedback circuit behavior from component properties
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Nitzan Rosenfeld, Jonathan W Young, Uri Alon, Peter S Swain, Michael B Elowitz
    posted to circuit prediction syntheticbiology by austin on 2007-12-30 03:35:39 as read along with 3 people balicea rsantana cjeans
  • A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts
    Bioinformatics, Vol. 23, No. 20. (15 October 2007), pp. 2760-2767.
    by Yizhi Cai, Brian Hartnett, Claes Gustafsson, Jean Peccoud
    posted to abstraction grammar parts syntheticbiology by austin on 2007-12-26 04:23:47 as read
  • A synthetic gene network for tuning protein degradation in Saccharomyces cerevisiae
    Mol Syst Biol, Vol. 3 (31 July 2007)
    by Chris Grilly, Jesse Stricker, Wyming L Pang, Matthew R Bennett, Jeff Hasty
    posted to clpxp degradation syntheticbiology yeast by austin on 2008-06-12 04:25:41 as read along with 3 people zwang kfm9876 balicea
  • Engineering and applications of genetic circuits.
    Mol Biosyst, Vol. 3, No. 12. (December 2007), pp. 835-840.
    by DJ Sayut, PK Kambam, L Sun
    posted to syntheticbiology by austin on 2008-01-10 04:22:33 as ** along with 1 person balicea
  • Production of the non-ribosomal peptide plipastatin in Bacillus subtilis regulated by three relevant gene blocks assembled in a single movable DNA segment.
    Journal of biotechnology, Vol. 129, No. 4. (10 May 2007), pp. 592-603.
    by K Tsuge, K Matsui, M Itaya
    posted to assembly dna syntheticbiology by austin on 2008-06-29 01:28:57 as read
  • Light-powering Escherichia coli with proteorhodopsin.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 7. (13 February 2007), pp. 2408-2412.
    by JM Walter, D Greenfield, C Bustamante, J Liphardt
    posted to proteorhodopsin syntheticbiology by austin on 2008-06-29 01:27:32 as read
  • Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium.
    Proc Natl Acad Sci U S A (24 October 2007)
    by Katie Brenner, David K K Karig, Ron Weiss, Frances H H Arnold
    posted to circuit quorum sensing syntheticbiology by austin on 2008-01-01 23:18:43 as read along with 1 person aswin
  • Expanding the metabolic engineering toolbox: more options to engineer cells.
    Trends Biotechnol, Vol. 25, No. 3. (March 2007), pp. 132-137.
    by KE Tyo, HS Alper, GN Stephanopoulos
    posted to syntheticbiology by austin on 2008-06-29 01:51:38 as read along with 3 people cmmorel dbikard grahamc
  • Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.
    Nature protocols, Vol. 1, No. 3. (2006), pp. 1637-1652.
    by DA Wright, S Thibodeau-Beganny, JD Sander, RJ Winfrey, AS Hirsh, M Eichtinger, F Fu, MH Porteus, D Dobbs, DF Voytas, JK Joung
    posted to assembly syntheticbiology zincfinger by austin on 2008-06-29 01:29:48 as read
  • Foundations for engineering biology
    Nature, Vol. 438, No. 7067. (November 2005), pp. 449-453.
    by Drew Endy
    posted to syntheticbiology by austin on 2008-07-11 21:49:47 as read along with 9 people and 1 group monod jmeppley eweaver perrywoo johncumbers pirapira kevinchannon dbikard grahamc SynBioSys
  • Dark proteins: Effect of inclusion body formation on quantification of protein expression.
    Proteins (18 March 2008)
    by Marco AJA Iafolla, Mostafizur Mazumder, Vandit Sardana, Tharsan Velauthapillai, Karanbir Pannu, David RR Mcmillen
    posted to gfp measurement reporter syntheticbiology useful by austin on 2008-03-25 22:38:26 as read
  • Synthesis of Polyester by Means of Genetic Code Reprogramming
    Chemistry & Biology, Vol. 14, No. 12. (26 December 2007), pp. 1315-1322.
    by Atsushi Ohta, Hiroshi Murakami, Eri Higashimura, Hiroaki Suga
    posted to code genetic invitro neat syntheticbiology translation by austin on 2007-12-26 23:24:59 as read
  • Medium scale integration of molecular logic gates in an automaton.
    Nano letters, Vol. 6, No. 11. (November 2006), pp. 2598-2603.
    by J Macdonald, Y Li, M Sutovic, H Lederman, K Pendri, W Lu, BL Andrews, D Stefanovic, MN Stojanovic
    posted to deoxyribozyme gates invitro syntheticbiology by austin on 2008-06-29 01:35:01 as read
  • Synthetic biology: lessons from the history of synthetic organic chemistry
    Nat Chem Biol, Vol. 3, No. 9. (2007), pp. 521-525.
    by Brian J Yeh, Wendell A Lim
    posted to commentary syntheticbiology by austin on 2007-12-23 23:31:04 as read along with 1 person melting
  • Parallel gene synthesis in a microfluidic device.
    Nucleic acids research, Vol. 35, No. 8. (2007)
    by DS Kong, PA Carr, L Chen, S Zhang, JM Jacobson
    posted to dna microfluidics synthesis syntheticbiology by austin on 2008-06-29 01:28:11 as read
  • Modular cell biology: retroactivity and insulation
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Domitilla Del Vecchio, Alexander J Ninfa, Eduardo D Sontag
    posted to excellent modularity syntheticbiology by austin on 2008-03-24 17:37:50 as read along with 5 people margaritis rsantana pmendes roys AbnerCYH
  • Reporter proteins for in vivo fluorescence without oxygen
    Nature Biotechnology, Vol. 25, No. 4. (11 March 2007), pp. 443-445.
    by Thomas Drepper, Thorsten Eggert, Franco Circolone, Achim Heck, Ulrich Krauß, Jan-Karl Guterl, Marion Wendorff, Aba Losi, Wolfgang Gärtner, Karl-Erich Jaeger
    posted to parts reporter syntheticbiology by austin on 2008-06-29 01:30:51 as read along with 1 person jyuh
  • Programmable cells: interfacing natural and engineered gene networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 22. (1 June 2004), pp. 8414-8419.
    by H Kobayashi, M Kaern, M Araki, K Chung, TS Gardner, CR Cantor, JJ Collins
    posted to circuit switch syntheticbiology by austin on 2008-07-24 02:05:57 as read along with 3 people rklancer dbikard snowcrash
  • Programming and engineering biological networks.
    Current opinion in structural biology, Vol. 16, No. 4. (August 2006), pp. 551-556.
    by JW Chin
    posted to syntheticbiology by austin on 2008-06-29 01:25:57 as read
  • Construction of an in vitro bistable circuit from synthetic transcriptional switches
    Mol Syst Biol, Vol. 2 (12 December 2006)
    by Jongmin Kim, Kristin S White, Erik Winfree
    posted to circuit dna invitro rna syntheticbiology transcription by austin on 2008-03-17 19:30:17 as read along with 2 people satsumakenji balabu
  • Dispersing biofilms with engineered enzymatic bacteriophage
    PNAS, Vol. 104, No. 27. (3 July 2007), pp. 11197-11202.
    by Timothy K Lu, James J Collins
    posted to phage syntheticbiology by austin on 2007-08-27 01:41:24 as read
  • Biology by design: reduction and synthesis of cellular components and behaviour.
    Journal of the Royal Society, Interface / the Royal Society, Vol. 4, No. 15. (22 August 2007), pp. 607-623.
    by P Marguet, F Balagadde, C Tan, L You
    posted to syntheticbiology by austin on 2008-06-29 01:26:39 as read
  • Refinement and standardization of synthetic biological parts and devices
    Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 787-793.
    by Barry Canton, Anna Labno, Drew Endy
    posted to syntheticbiology by austin on 2008-07-24 19:31:24 as **** along with 2 people marck grahamc
  • A synthetic oscillatory network of transcriptional regulators.
    Nature, Vol. 403, No. 6767. (20 January 2000), pp. 335-338.
    by MB Elowitz, S Leibler
    posted to oscillation syntheticbiology by austin on 2008-07-11 22:24:37 as read along with 12 people mattions rklancer dgront sharatjv mhucka margaritis Grobi msuarezdiez tvdbulck jjray dagmar Borelli
  • RNA and RNP as new molecular parts in synthetic biology
    Journal of Biotechnology, Vol. 132, No. 1. (15 October 2007), pp. 1-7.
    by Hirohide Saito, Tan Inoue
    posted to design ribozyme rna syntheticbiology by austin on 2007-12-26 03:48:47 as read along with 2 people marck grahamc
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