Tag tfnets [22 articles] Export

Recent papers classified by the tag tfnets.

	Allegro: Analyzing expression and sequence in concert to discover regulatory programs [My Copy] Nucl. Acids Res., Vol. 37, No. 5. (1 April 2009), pp. 1566-1579. by Yonit Halperin, Chaim Linhart, Igor Ulitsky, Ron Shamir posted to tfprograms tfnets motif_discovery modules by roys on 2009-11-12 23:15:41 as along with 3 people akshayk rdiaz nuin
	Combinatorial binding predicts spatio-temporal cis-regulatory activity. [My Copy] Nature, Vol. 462, No. 7269. (5 November 2009), pp. 65-70. by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. Furlong posted to tfnets fly combinatorial_control by roys on 2009-11-08 19:15:53 as along with 10 people emptyhb toszko inesdesantiago fenghezi balabu iskathy djkt megraw TRHvidsten pedrobeltrao
	Evolution of Eukaryotic Transcription Circuits [My Copy] Science, Vol. 319, No. 5871. (28 March 2008), pp. 1797-1799. by Brian B. Tuch, Hao Li, Alexander D. Johnson posted to tfnets rewiring evolution by roys on 2009-10-15 00:22:56 as along with 6 people biomcgary balabu emptyhb AbnerCYH djkt bpcusack
	A chromatin-mediated mechanism for specification of conditional transcription factor targets [My Copy] Nat Genet, Vol. 38, No. 12. (12 December 2006), pp. 1446-1451. by Michael J. Buck, Jason D. Lieb posted to protein-dna tfnets by roys on 2009-08-11 07:36:40 as along with 3 people and 2 groups nickluscombe kengg olympos EBI-regulation Plantandetc
	Functional States of the genome-scale Escherichia coli transcriptional regulatory system. [My Copy] PLoS computational biology, Vol. 5, No. 6. (5 June 2009), e1000403. by Erwin P. Gianchandani, Andrew R. Joyce, Bernhard Ø. Palsson, Jason A. Papin posted to metabolic_nw tfnets by roys on 2009-06-12 06:48:14 as along with 3 people schwartzjmc TRHvidsten trfield
	Diversity and Complexity in DNA Recognition by Transcription Factors [My Copy] Science, Vol. 324, No. 5935. (26 June 2009), pp. 1720-1723. by Gwenael Badis, Michael F. Berger, Anthony A. Philippakis, et al.Shaheynoor Talukder, Andrew R. Gehrke, Savina A. Jaeger, Esther T. Chan, Genita Metzler, Anastasia Vedenko, Xiaoyu Chen, Hanna Kuznetsov, Chi-Fong Wang, David Coburn, Daniel E. Newburger, Quaid Morris, Timothy R. Hughes, Martha L. Bulyk posted to mouse protein-dna regulatory_nw tfnets by roys on 2009-05-17 00:59:41 as along with 21 people and 1 group sconlan isimpson jbhiatt daforerog absterga mingzhi galka8_diploma fenghezi TRHvidsten ilyashl cambray rpatward tibbitts dpollard siebert JustinCrocker burak aalibes dipenps emptyhb tmmurali RockmanLab
	Using Network Component Analysis to Dissect Regulatory Networks Mediated by Transcription Factors in Yeast [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (20 March 2009), e1000311. by Chun Ye, Simon J. Galbraith, James C. Liao, Eleazar Eskin posted to causality qtl tfnets yeast by roys on 2009-03-22 01:46:04 as along with 5 people TRHvidsten svenrahmann dolchan idonaldson rdiaz
	Interacting models of cooperative gene regulation. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 46. (16 November 2004), pp. 16234-16239. by D. Das, N. Banerjee, M. Q. Zhang posted to combinatorial_control tfnets by roys on 2009-03-09 01:45:57 as along with 4 people misonneh jfr Ao_Li2007 lambda
	Harnessing naturally randomized transcription to infer regulatory relationships among genes [My Copy] Genome Biology, Vol. 8 (11 October 2007), R219. by Lin S. Chen, Frank Emmert-Streib, John D. Storey posted to biological_networks causality tfnets by roys on 2009-03-01 18:28:05 as along with 1 person caseybrown
	Computational discovery of gene modules and regulatory networks [My Copy] Nat Biotech, Vol. 21, No. 11. (12 October 2003), pp. 1337-1342. by Ziv Bar-Joseph, Georg K. Gerber, Tong I. Lee, et al.Nicola J. Rinaldi, Jane Y. Yoo, Francois Robert, D. Benjamin Gordon, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted to microarrayplasticity reconstruction regulatory-cascades tfnets tfprograms transcription transcription_modules gene_regulation by wangbo on 2009-02-17 06:35:42 as along with 16 people and 1 group stharward myzhang Borelli ggrot dragonrez bayesian wnpx nickluscombe koller frohike karfunkel roys dquest balicea carlk tvdbulck EBI-regulation
	Analysis of combinatorial cis-regulation in synthetic and genomic promoters [My Copy] Nature, Vol. 457, No. 7226. (23 November 2008), pp. 215-218. by Jason Gertz, Eric D. Siggia, Barak A. Cohen posted to combinatorial_control gene_expression tfnets tfprograms by roys on 2009-01-18 20:28:22 as along with 17 people and 4 groups Vincent_Rouilly pcarbo emptyhb TRHvidsten rpatward jbhiatt lusk maximilianh dpollard druvus sebastien_vigneau pengchy sandersl djkt siebert isimpson xianjun TranscriptionalRegulationWithThermodynamicModels RockmanLab cis-regulatory-evolution microbiology_nijmegen
	Modeling the combinatorial functions of multiple transcription factors. [My Copy] J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 463-480. by C. H. Yeang, T. Jaakkola posted to combinatorial_control protein-dna_interaction_prediction tfnets by roys on 2008-03-22 18:12:34 as along with 1 person and 1 group cdppublications CDP
	Predicting expression patterns from regulatory sequence in Drosophila segmentation [My Copy] Nature, Vol. 451, No. 7178. (02 January 2008), pp. 535-540. by Eran Segal, Tali Raveh-Sadka, Mark Schroeder, Ulrich Unnerstall, Ulrike Gaul posted to fly tfnets by roys on 2008-03-22 18:05:22 as along with 19 people and 2 groups TRHvidsten daveGerrard koller dlmace ptrobajo isimpson dakelley tmmurali eckart_bindewald djkt bootsy biomcgary idonaldson emptyhb pkharchenko meiklej jrest tresch siebert BergmanLab TranscriptionalRegulationWithThermodynamicModels
	Predicting Gene Expression from Sequence [My Copy] Cell, Vol. 117, No. 2. (16 April 2004), pp. 185-198. by Michael A. Beer, Saeed Tavazoie posted to tfnets by roys on 2008-03-22 17:59:43 as along with 1 person fenghezi
	Regulatory Module Network of bHLH Transcription Factors in Mouse Brain [My Copy] Genome Biology, Vol. 8 (19 November 2007), R244. by Jing Li, Zijing Liu, Yuchun Pan, et al.Qi Liu, Xing Fu, Nigel G. F. Cooper, Yixue Li, Mengsheng Qiu, Tieliu Shi posted to module_nw regnet tfnets by roys on 2008-02-06 17:10:58 as along with 2 people cjeans fpattyn
	High-resolution analysis of condition-specific regulatory modules in Saccharomyces cerevisiae [My Copy] Genome Biology, Vol. 9 (03 January 2008), R2. by Hun-Goo Lee, Hyo-Soo Lee, Sang-Hoon Jeon, Tae-Hoon Chung, Young-Sung Lim, Won-Ki Huh posted to condition_specific_nw condition_specific_response tfnets by roys on 2008-01-11 06:24:36 as along with 3 people lusk ptrobajo maximilianh
	Context-dependent clustering for dynamic cellular state modeling of microarray gene expression [My Copy] Bioinformatics, Vol. 23, No. 22. (15 November 2007), pp. 3039-3047. by Shinsheng Yuan, Ker-Chau Li posted to context_sensitive nw regulatory tfnets by roys on 2007-11-19 16:22:10 as
	Coevolutionary networks of splicing cis-regulatory elements [My Copy] Proceedings of the National Academy of Sciences (12 November 2007), 0707349104. by Xinshu Xiao, Zefeng Wang, Minyoung Jang, Christopher B. Burge posted to bayesian_networks tfnets tfprograms transcription_modules by roys on 2007-11-14 06:01:21 as along with 3 people druvus cjeans oelemento
	Transcriptional Regulatory Networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804. by Tong I. Lee, Nicola J. Rinaldi, Francois Robert, et al.Duncan T. Odom, Ziv Bar-Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher T. Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, D. Benjamin Gordon, Bing Ren, John J. Wyrick, Jean-Bosco Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young posted to network_motifs tfnets by roys on 2007-11-06 18:33:57 as along with 31 people and 2 groups mjoach kmdaily kinop junehlee lillo80 camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 njcitulike brant kristallreiner Borelli Takayuki dquest siebert dbk-lab TNT
	Characterizing disease states from topological properties of transcriptional regulatory networks. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by D. P. Tuck, H. M. Kluger, Y. Kluger posted to cancer condition_specific_nw tfnets tra transcription_modules by roys on 2007-11-06 04:08:37 as along with 2 people Scis0000002 jfr
	Probabilistic discovery of overlapping cellular processes and their regulation. [My Copy] J Comput Biol, Vol. 12, No. 7. (September 2005), pp. 909-927. by A. Battle, E. Segal, D. Koller posted to tfnets transcription_modules by roys on 2007-11-06 03:18:58 as along with 3 people ptrobajo nirfriedman srp33
	Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data [My Copy] Nat Genet, Vol. 34, No. 2. (11 May 2003), pp. 166-176. by Eran Segal, Michael Shapira, Aviv Regev, et al.Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman posted to tfnets transcription_modules by roys on 2007-11-06 03:15:43 as along with 25 people and 1 group stharward bertelsen ipark-kaist VGreiff benjaminsb wangbo ajbattle cswinburne ggallone ealloza orzenil tuck bayesian wnpx tabu koller olympos fishtank dimatura karfunkel pkm dragonrez tvdbulck chrisamiller aviad_work Jarman Lab

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transcription_modules	6
tfprograms	5
combinatorial_control	4
causality	2
condition_specific_nw	2
fly	2
protein-dna	2
bayesian_networks	1
biological_networks	1
cancer	1
condition_specific_response	1
context_sensitive	1
evolution	1
gene_expression	1
gene_regulation	1
metabolic_nw	1
microarrayplasticity	1
module_nw	1
modules	1
motif_discovery	1
mouse	1
network_motifs	1
nw	1
protein-dna_interaction_prediction	1
qtl	1
reconstruction	1
regnet	1
regulatory	1
regulatory-cascades	1
regulatory_nw	1
rewiring	1
tra	1
transcription	1
yeast	1

Tag tfnets [22 articles] Export

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