Tag tfs [130 articles] Export

Recent papers classified by the tag tfs.

	The transcription unit architecture of the Escherichia coli genome. [My Copy] Nature biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1043-1049. by Byung-Kwan K. Cho, Karsten Zengler, Yu Qiu, et al.Young Seoub S. Park, Eric M. Knight, Christian L. Barrett, Yuan Gao, Bernhard Ø. Palsson posted to tfs networks dataset bacteria by venancio on 2009-11-16 17:34:58 as along with 5 people karthikraman JeremyZucker dbikard jjray rsaito
	Distinct relationships between GLABRA2 and single-repeat R3 MYB transcription factors in the regulation of trichome and root hair patterning in Arabidopsis. [My Copy] The New phytologist (29 October 2009) by Shucai Wang, Christa Barron, John Schiefelbein, Jin-Gui G. Chen posted to trichome tfs by kengg on 2009-11-03 19:24:54 as
	Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains [My Copy] Nucl. Acids Res., Vol. 33, No. 13. (21 July 2005), pp. 3994-4006. by S. Balaji, Madan M. Babu, Lakshminarayan M. Iyer, L. Aravind posted to transposable_elements tfs plasmodium aravind apicomplexa by venancio on 2009-10-30 19:40:45 as along with 1 person robfsouza
	Reconstructing prokaryotic transcriptional regulatory networks: lessons from actinobacteria [My Copy] Journal of Biology, Vol. 8, No. 3. (15 April 2009), 29. by Thiago Venancio, L. Aravind posted to transcription tfs systems_biology networks evolution bacteria by venancio on 2009-10-23 18:49:31 as along with 1 person robfsouza
	Distinguishing direct versus indirect transcription factor-DNA interactions. [My Copy] Genome research, Vol. 19, No. 11. (3 November 2009), pp. 2090-2100. by Raluca Gordân, Alexander J. Hartemink, Martha L. Bulyk posted to yeast transcription tfs networks dataset chromatin by venancio on 2009-10-23 18:32:49 as along with 13 people roys sebastien_vigneau oannes nklee djkt vingron owhitney tmmurali emptyhb idonaldson maximilianh jbhiatt frohike
	Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions [My Copy] Genome Biology, Vol. 10, No. 7. (23 July 2009), R80. by Stewart MacArthur, Xiao Y. Li, Jingyi Li, et al.James Brown, Hou C. Chu, Lucy Zeng, Brandi Grondona, Aaron Hechmer, Lisa Simirenko, Soile Keranen, David Knowles, Mark Stapleton, Peter Bickel, Mark Biggin, Michael Eisen posted to transcription tfs insects drosophila development by venancio on 2009-10-23 18:30:06 as along with 11 people and 2 groups aalibes fenghezi idonaldson daveGerrard megraw scjparker maximilianh djkt isimpson Stew druvus BergmanLab Bioinformatics - CRUK
	A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. [My Copy] Cell, Vol. 138, No. 2. (23 July 2009), pp. 314-327. by Christian A. Grove, Federico De Masi, M. Inmaculada Barrasa, et al.Daniel E. Newburger, Mark J. Alkema, Martha L. Bulyk, Albertha J. Walhout posted to transcription_factors tfs protein_family promiscuity integrated_networks integrated_network dna_binding c_elegans by freddemasi on 2009-08-26 21:34:53 as along with 2 people roys emptyhb
	Role of STAT5a in regulation of sex-specific gene expression in female but not male mouse liver revealed by microarray analysis [My Copy] Physiol. Genomics, Vol. 31, No. 1. (19 September 2007), pp. 63-74. by Karl H. Clodfelter, Gregory D. Miles, Valerie Wauthier, et al.Minita G. Holloway, Xiaohua Zhang, Paul Hodor, William J. Ray, David J. Waxman posted to tfs stat5a mouse microarray liver differential-gene-expression by n00c on 2009-06-06 20:06:21 as
	Liver-Specific Hepatocyte Nuclear Factor-4alpha Deficiency: Greater Impact on Gene Expression in Male than in Female Mouse Liver [My Copy] Mol Endocrinol, Vol. 22, No. 5. (1 May 2008), pp. 1274-1286. by Minita G. Holloway, Gregory D. Miles, Alan A. Dombkowski, David J. Waxman posted to tfs mouse microarray liver hnf4alpha differential-gene-expression by n00c on 2009-06-06 19:05:05 as
	The MYB23 Gene Provides a Positive Feedback Loop for Cell Fate Specification in the Arabidopsis Root Epidermis [My Copy] Plant Cell, Vol. 21, No. 4. (1 April 2009), pp. 1080-1094. by Yeon H. Kang, Victor Kirik, Martin Hulskamp, et al.Kyoung H. Nam, Katherine Hagely, Myeong M. Lee, John Schiefelbein posted to arabidopsis myb root tfs by kengg on 2009-05-24 20:50:01 as
	The HD-ZIP IV transcription factor OCL4 is necessary for trichome patterning and anther development in maize. [My Copy] The Plant journal : for cell and molecular biology (12 May 2009) by Vanessa Vernoud, Guillaume Laigle, Frédérique Rozier, Robert B B. Meeley, Pascual Perez, Peter M M. Rogowsky posted to homeodomain maize tfs trichome by kengg on 2009-05-24 13:06:48 as
	Sensitivity of the human auditory system to temporal fine structure at high frequencies [My Copy] The Journal of the Acoustical Society of America, Vol. 125, No. 5. (2009), pp. 3186-3193. by Brian C. J. Moore, Aleksander Sek posted to human missing temporal tfs auditory system by marekrud on 2009-05-14 17:07:28 as along with 1 person ewanmacpherson
	Preparation of high-T[sub c] oxide superconductors at low substrate temperature by facing-targets sputtering [My Copy] Journal of Applied Physics, Vol. 67, No. 9. (1990), pp. 5047-5048. by T. Hirata, M. Naoe posted to journal tfs ybco by kken on 2009-05-13 16:39:38 as
	Study of low power deposition of ITO for top emission OLED with facing target and RF sputtering systems [My Copy] J. Phys.: Conf. Ser., Vol. 100, No. 4. (2008), 042011. by S. Dangtip, Y. Hoshi, Y. Kasahara, et al.Y. Onai, T. Osotchan, Y. Sawada, T. Uchida posted to journal tfs by kken on 2009-05-12 13:09:52 as
	A hierarchical network of transcription factors governs androgen receptor-dependent prostate cancer growth. [My Copy] Mol Cell, Vol. 27, No. 3. (3 August 2007), pp. 380-392. by Q. Wang, W. Li, X. S. Liu, et al.J. S. Carroll, O. A. Jänne, E. K. Keeton, A. M. Chinnaiyan, K. J. Pienta, M. Brown posted to androgen cancer chip prostate tfs tiling tmprss2 by xingxu on 2009-03-18 06:56:21 as along with 1 person Terkko
	A Systems Approach Reveals Regulatory Circuitry for <italic>Arabidopsis</italic> Trichome Initiation by the GL3 and GL1 Selectors [My Copy] PLoS Genet, Vol. 5, No. 2. (27 February 2009), e1000396. by Kengo Morohashi, Erich Grotewold posted to chip-chip coexpression tfs by kengg on 2009-03-02 17:00:42 as
	Genome-Wide Analysis of Genes Targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during Seed Germination in Arabidopsis. [My Copy] The Plant cell (24 February 2009) by Eunkyoo Oh, Hyojin Kang, Shinjiro Yamaguchi, et al.Jeongmoo Park, Doheon Lee, Yuji Kamiya, Giltsu Choi posted to chip-chip light tfs by kengg on 2009-03-02 04:25:44 as along with 1 person mojopin85
	Using TESS to predict transcription factor binding sites in DNA sequence. [My Copy] Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 2 (March 2008) by J. Schug posted to bioinformatics software tfs by xingxu on 2009-01-22 16:50:56 as along with 2 people maximilianh guhjy
	Transcription Factor RAP2.2 and Its Interacting Partner SINAT2: Stable Elements in the Carotenogenesis of Arabidopsis Leaves [My Copy] Plant Physiol., Vol. 145, No. 3. (1 November 2007), pp. 1073-1085. by Ralf Welsch, Dirk Maass, Tanja Voegel, Dean Dellapenna, Peter Beyer posted to psy tfs by welschra on 2009-01-19 21:59:17 as
	AtMYB12 regulates caffeoyl quinic acid and flavonol synthesis in tomato: expression in fruit results in very high levels of both types of polyphenol [My Copy] The Plant Journal, Vol. 56, No. 2. (October 2008), pp. 316-326. by Luo, Jie, Butelli, et al. Eugenio, Hill, Lionel, Parr, Adrian, Niggeweg, Ricarda, Bailey, Paul, Weisshaar, Bernd, Martin, Cathie posted to flavonoid myb tfs tomato by kengg on 2008-11-17 20:31:20 as
	Functional specialization of the TRANSPARENT TESTA GLABRA1 network allows differential hormonal control of laminal and marginal trichome initiation in Arabidopsis rosette leaves. [My Copy] Plant physiology (10 September 2008) by Lies Maes, Dirk Inze, Alain Goossens posted to tfs trichome by kengg on 2008-11-07 15:46:34 as
	Comprehensive identification of Arabidopsis thaliana MYB transcription factors interacting with R/B-like BHLH proteins. [My Copy] The Plant journal : for cell and molecular biology, Vol. 40, No. 1. (October 2004), pp. 22-34. by I. M. Zimmermann, M. A. Heim, B. Weisshaar, J. F. Uhrig posted to bhlh myb tfs by kengg on 2008-10-15 04:44:16 as
	PAT1, a new member of the GRAS family, is involved in phytochrome A signal transduction. [My Copy] Genes & development, Vol. 14, No. 10. (15 May 2000), pp. 1269-1278. by C. Bolle, C. Koncz, N. H. Chua posted to gras light tfs by kengg on 2008-10-01 14:49:27 as
	Shoot and inflorescence branching. [My Copy] Current opinion in plant biology, Vol. 8, No. 5. (October 2005), pp. 506-511. by G. Schmitz, K. Theres posted to arabidopsis gras leaf tfs by kengg on 2008-10-01 04:18:12 as
	SAD2 in Arabidopsis Functions in Trichome Initiation through Mediating GL3 Function and Regulating GL1, TTG1 and GL2 Expression [My Copy] Journal of Integrative Plant Biology, Vol. 50, No. 7. (July 2008), pp. 906-917. by Gao, Ying, Gong, et al. Ximing, Cao, Wanhong, Zhao, Jinfeng, Fu, Liqin, Wang, Xuechen, Schumaker, S. Karen, Guo, Yan posted to tfs traffic trichome by kengg on 2008-08-24 18:45:21 as
	Promoter of a cotton fibre MYB gene functional in trichomes of Arabidopsis and glandular trichomes of tobacco. [My Copy] Journal of experimental botany (18 August 2008) by Xiao-Xia X. Shangguan, Bing Xu, Zong-Xia X. Yu, Ling-Jian J. Wang, Xiao-Ya Y. Chen posted to gl1 gl3 hint tfs tobacco trichome by kengg on 2008-08-21 04:52:25 as
	The Arabidopsis Athb-10 (GLABRA2) is an HD-Zip protein required for regulation of root hair development. [My Copy] The Plant journal : for cell and molecular biology, Vol. 10, No. 3. (September 1996), pp. 393-402. by M. Di Cristina, G. Sessa, L. Dolan, et al.P. Linstead, S. Baima, I. Ruberti, G. Morelli posted to root tfs trichome by kengg on 2008-08-19 21:41:50 as
	The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. [My Copy] Planta, Vol. 227, No. 3. (February 2008), pp. 707-715. by S. Pattanaik, C. H. Xie, L. Yuan posted to bhlh maize myc r tfs by kengg on 2008-08-15 01:36:35 as
	Core transcriptional regulatory circuitry in human embryonic stem cells. [My Copy] Cell, Vol. 122, No. 6. (23 September 2005), pp. 947-956. by Laurie A. Boyer, Tong Ihn I. Lee, Megan F. Cole, et al.Sarah E. Johnstone, Stuart S. Levine, Jacob P. Zucker, Matthew G. Guenther, Roshan M. Kumar, Heather L. Murray, Richard G. Jenner, David K. Gifford, Douglas A. Melton, Rudolf Jaenisch, Richard A. Young posted to chip es genome-wide human network tfs by kengg on 2008-08-06 14:06:57 as along with 13 people rklancer kentsis tardigrade balicea tabu cconboy koller Stew faisalm mikaelhuss tdmckee brant dquest
	Variation in expression and protein localization of the PIN family of auxin efflux facilitator proteins in flavonoid mutants with altered auxin transport in Arabidopsis thaliana. [My Copy] The Plant cell, Vol. 16, No. 7. (July 2004), pp. 1898-1911. by W. A. Peer, A. Bandyopadhyay, J. J. Blakeslee, et al.S. N. Makam, R. J. Chen, P. H. Masson, A. S. Murphy posted to auxin flavonoid root tfs by kengg on 2008-08-05 20:56:51 as
	The evolution of plant regulatory networks: what Arabidopsis cannot say for itself. [My Copy] Current opinion in plant biology, Vol. 10, No. 6. (December 2007), pp. 653-659. by J. Nardmann, W. Werr posted to arabidopsis homeodomain maize network review tfs by kengg on 2008-07-22 21:25:08 as along with 2 people carlk Borelli
	Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. [My Copy] Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117. by X. Chen, H. Xu, P. Yuan, et al.F. Fang, M. Huss, V. B. Vega, E. Wong, Y. L. Orlov, W. Zhang, J. Jiang, Y. H. Loh, H. C. Yeo, Z. X. Yeo, V. Narang, K. R. Govindarajan, B. Leong, A. Shahab, Y. Ruan, G. Bourque, W. K. Sung, N. D. Clarke, C. L. Wei, H. H. Ng posted to bioinformatics chip chip-seq genome-wide high-throughput network tfs by kengg on 2008-07-14 16:09:02 as along with 12 people and 2 groups isimpson shikin sebastien_vigneau cassj rschulz FJ fhalbrit djkt jjray inesdesantiago caseybrown gdb Epigenetics CTCF
	Identification of a cis-regulatory element by transient analysis of co-ordinately regulated genes [My Copy] Plant Methods, Vol. 4, No. 1. (2008) by Andrew Dare, Robert Schaffer, Kui L. Wang, Andrew Allan, Roger Hellens posted to arabidopsis bioinformatics flavonoid microarray myb tfs by kengg on 2008-07-07 01:35:25 as along with 1 person natstreet
	Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks. [My Copy] Nature genetics, Vol. 40, No. 7. (15 July 2008), pp. 854-861. by Jun Zhu, Bin Zhang, Erin N. Smith, et al.Becky Drees, Rachel B. Brem, Leonid Kruglyak, Roger E. Bumgarner, Eric E. Schadt posted to coexpression network systems tfs yeast by kengg on 2008-06-19 21:54:39 as along with 19 people and 1 group JoeBanks arider1 megraw TRHvidsten siebert ggallone jo_davies suteedee burak realzhang maralena ptrobajo tmmurali guhjy roys marck caseybrown djkt srp33 Jarman Lab
	Two-Dimensional Patterning by a Trapping/Depletion Mechanism: The Role of TTG1 and GL3 in Arabidopsis Trichome Formation [My Copy] PLoS Biology, Vol. 6, No. 6. (1 June 2008), e141. by Daniel Bouyer, Florian Geier, Friedrich Kragler, et al.Arp Schnittger, Martina Pesch, Katja Wester, Rachappa Balkunde, Jens Timmer, Christian Fleck, Martin Hülskamp posted to tfs trichome by kengg on 2008-06-14 02:07:09 as
	Transcription factors for predictive plant metabolic engineering: are we there yet? [My Copy] Current opinion in biotechnology, Vol. 19, No. 2. (April 2008), pp. 138-144. by E. Grotewold posted to metabolite network review tfs by kengg on 2008-06-08 20:30:57 as
	High-throughput Biochemical Analysis of in-vivo Location Data Reveals Novel Classes of POU5F1(Oct4)/DNA complexes. [My Copy] Genome Res (22 January 2008) by Dean Tantin, Matt Gemberling, Catherine Callister, Will Fairbrother posted to chip methods pou5f1 tfs by xingxu on 2008-05-19 20:20:46 as along with 2 people maximilianh caseybrown
	FKF1 F-box protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5732. (8 July 2005), pp. 293-297. by T. Imaizumi, T. F. Schultz, F. G. Harmon, L. A. Ho, S. A. Kay posted to circadian tfs by kengg on 2008-05-16 03:44:23 as
	TCP transcription factors control the morphology of shoot lateral organs via negative regulation of the expression of boundary-specific genes in Arabidopsis. [My Copy] The Plant cell, Vol. 19, No. 2. (1 February 2007), pp. 473-484. by Tomotsugu Koyama, Masahiko Furutani, Masao Tasaka, Masaru Ohme-Takagi posted to tfs by kengg on 2008-05-16 03:38:56 as along with 3 people natstreet danish_punter bjbecerra
	KNOX lost the OX: the Arabidopsis KNATM gene defines a novel class of KNOX transcriptional regulators missing the homeodomain. [My Copy] The Plant cell, Vol. 20, No. 4. (8 April 2008), pp. 875-887. by Enrico Magnani, Sarah Hake posted to tfs by kengg on 2008-05-14 20:08:33 as along with 1 person and 1 group p2vani Botany and Plant Sciences
	Modulation of brassinosteroid-regulated gene expression by jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 21. (27 May 2008), pp. 7618-7623. by Xiaofei Yu, Li Li, Lei Li, Michelle Guo, Joanne Chory, Yanhai Yin posted to chip jmj tfs by kengg on 2008-05-11 01:05:31 as along with 1 person udivi
	Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Yuji Zhang, Jianhua Xuan, Benildo, Robert Clarke, Habtom Ressom posted to bioinformatics coexpression network tfs by kengg on 2008-04-24 01:35:28 as along with 7 people natstreet druvus heliopais dquest bootsy bertelsen guhjy
	Engineering polydactyl zinc-finger transcription factors. [My Copy] Nature biotechnology, Vol. 20, No. 2. (February 2002), pp. 135-141. by R. R. Beerli, C. F. Barbas posted to hint tfs by kengg on 2008-04-05 01:23:05 as
	On the relation between promoter divergence and gene expression evolution [My Copy] Molecular Systems Biology, Vol. 4 (15 January 2008) by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai posted to bioinformatics hint network tfs by kengg on 2008-03-07 19:20:12 as along with 10 people and 2 groups daveGerrard emptyhb balicea zwang biomcgary cisevol caseybrown renatomilani mclarenv Jporci cis-regulatory-evolution BergmanLab
	DISTORTED3/SCAR2 is a putative arabidopsis WAVE complex subunit that activates the Arp2/3 complex and is required for epidermal morphogenesis. [My Copy] Plant Cell, Vol. 17, No. 2. (February 2005), pp. 502-524. by D. Basu, J. Le, S. e. l. -. D. El-Essal, et al.S. Huang, C. Zhang, E. L. Mallery, G. Koliantz, C. J. Staiger, D. B. Szymanski posted to arabidopsis chip-chip tfs trichome by kengg on 2008-01-30 21:01:28 as
	TFS: A Transparent File System for Contributory Storage [My Copy] pp. 215-229. posted to distributed filesystem tfs by thiagomanel to the group Desktop Data Grid on 2008-01-29 21:13:30 as
	Over-expression of the Arabidopsis AtMYB41 gene alters cell expansion and leaf surface permeability [My Copy] The Plant Journal, Vol. 53, No. 1. (January 2008), pp. 53-64. by Cominelli, Eleonora, Sala, et al. Tea, Calvi, Daniele, Gusmaroli, Giuliana, Tonelli, Chiara posted to leaf myb stress tfs by kengg on 2008-01-20 03:35:28 as
	Programming gene expression with combinatorial promoters. [My Copy] Molecular systems biology, Vol. 3 (13 November 2007) by Robert Sidney S. Cox, Michael G. Surette, Michael B. Elowitz posted to bioinformatics network systems tfs by kengg on 2008-01-20 01:27:55 as along with 16 people and 3 groups balabu Synthetic_Biology_Literature Retchless tmmurali austin dpollard balicea dbikard margaritis lusk cjeans zwang discreteonyxorb cabbagezs Ema tresch TranscriptionalRegulationWithThermodynamicModels EisenLab SynBioSys
	Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors [My Copy] PLoS Comput Biol, Vol. 2, No. 5. (12 May 2006), e47. by Zhihua Zhang, Changning Liu, Geir Skogerbø, et al.Xiaopeng Zhu, Hongchao Lu, Lan Chen, Baochen Shi, Yong Zhang, Jie Wang, Tao Wu, Runsheng Chen posted to bioinformatics network tfs by kengg on 2007-12-25 03:42:43 as along with 3 people leemond31 ccots aswin
	Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings. [My Copy] Plant J (23 November 2007) by Antonio Gonzalez, Mingzhe Zhao, John M M. Leavitt, Alan M M. Lloyd posted to bhlh flavonoid metabolite myb tfs by kengg on 2007-12-15 03:03:33 as

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arabidopsis	81
network	43
bioinformatics	41
chip	29
trichome	27
bhlh	21
flavonoid	19
genome-wide	18
root	18
myb	16
metabolite	13
chromatin	9
maize	8
review	7
homeodomain	6
chip-chip	5
microarray	5
disease	4
flowering	4
rna	4
small-molecule	4
yeast	4
circadian	3
coexpression	3
drosophila	3
hint	3
networks	3
transcription	3
bacteria	2
dataset	2
differential-gene-expression	2
distributed	2
filesystem	2
gras	2
human	2
journal	2
leaf	2
light	2
lily	2
liver	2
mouse	2
nucleosome	2
stomata	2
systems	2
androgen	1
apicomplexa	1
aravind	1
archaea_pol	1
auditory	1
auxin	1
backtracking	1
c_elegans	1
cancer	1
chip-seq	1
cleavage	1
development	1
dna_binding	1
es	1
evolution	1
gl1	1
gl3	1
high-throughput	1
hnf4alpha	1
insects	1
integrated_network	1
integrated_networks	1
jmj	1
methods	1
missing	1
myc	1
plasmodium	1
pou5f1	1
promiscuity	1
proofreading	1
prostate	1
protein_family	1
psy	1
r	1
regulation	1
software	1
stat5a	1
stress	1
system	1
systems_biology	1
temporal	1
tiling	1
tmprss2	1
tobacco	1
tomato	1
traffic	1
transcription_factors	1
transposable_elements	1
ybco	1

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