Tag th_ibg [30 articles] Export

Recent papers classified by the tag th_ibg.

	Predicting transcription factor specificity with all-atom models. [My Copy] Nucleic acids research (1 October 2008) by Sahand Jamal J. Rahi, Peter Virnau, Leonid A A. Mirny, Mehran Kardar posted to all-atom factor model th_ibg transcription by chrn on 2009-03-01 16:55:05 as along with 6 people Jporci reyez maximilianh lptolik zwang aalibes
	Base pair opening and bubble transport in a DNA double helix induced by a protein molecule in a viscous medium [My Copy] (24 Dec 2008) by V. Vasumathi, M. Daniel posted to th_ibg by chrn on 2009-01-13 01:02:50 as
	Fundamentally different strategies for transcriptional regulation are revealed by information-theoretical analysis of binding motifs [My Copy] (21 Jan 2009) by Leonid A. Mirny, Zeba Wunderlich posted to th_ibg by chrn on 2009-01-13 00:58:09 as along with 3 people emptyhb akraemer jjray
	From nucleoporins to nuclear pore complexes. [My Copy] Current opinion in cell biology, Vol. 9, No. 3. (June 1997), pp. 401-411. by V. Doye, E. Hurt posted to nuclear pore th_ibg by chrn on 2009-01-10 20:02:04 as
	Nuclear pore complex is able to transport macromolecules with diameters of about 39 nm. [My Copy] Molecular biology of the cell, Vol. 13, No. 2. (February 2002), pp. 425-434. by N. Panté, M. Kann posted to th_ibg by chrn on 2009-01-10 15:06:04 as
	Genome comparisons and analysis [My Copy] Current Opinion in Structural Biology, Vol. 13, No. 3. (June 2003), pp. 344-352. by S. Karlin posted to dna-protein th_ibg by chrn on 2008-12-21 21:09:30 as
	Motif Discovery through Predictive Modeling of Gene Regulation [My Copy] (15 Jan 2007) by Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris H. Wiggins, Christina Leslie posted to th_ibg by chrn on 2008-12-20 21:44:30 as
	Spatial effects on the speed and reliability of protein-DNA search [My Copy] (11 Jun 2008) by Zeba Wunderlich, Leonid A. Mirny posted to dna-protein th_ibg by chrn on 2008-12-20 21:42:44 as
	Thermodynamic restrictions on evolutionary optimization of transcription factor proteins [My Copy] (10 Sep 2007) by Longhua Hu, Alexander Y. Grosberg, Robijn Bruinsma posted to evolution th_ibg transcription by chrn on 2008-12-20 21:40:47 as
	Structure and Dynamics of DNA-dendrimer complexation: Role of counterions, water and base pair sequence [My Copy] (18 Nov 2006) by Prabal K. Maiti, Biman Bagchi posted to complex dna-dendrimer th_ibg by chrn on 2008-12-20 21:21:48 as
	Predicting Transcription Factor Specificity with All-Atom Models [My Copy] (24 Sep 2008) by Sahand J. Rahi, Peter Virnau, Leonid A. Mirny, Mehran Kardar posted to all-atom factor th_ibg transcription by chrn on 2008-12-20 21:18:49 as
	Wide-Scale Analysis of Human Functional Transcription Factor Binding Reveals a Strong Bias towards the Transcription Start Site [My Copy] (8 Nov 2008) by Yuval Tabach, Ran Brosh, Yossi Buganim, et al.Anat Reiner, Or Zuk, Assif Yitzhaky, Mark Koudritsky, Varda Rotter, Eytan Domany posted to factor th_ibg transcription by chrn on 2008-12-20 21:17:52 as
	Importance Sampling of Word Patterns in DNA and Protein Sequences [My Copy] (26 Nov 2008) by Hock P. Chan, Nancy R. Zhang, Louis H. Y. Chen posted to th_ibg by chrn on 2008-12-20 21:11:45 as
	Simulation and analysis of in vitro DNA evolution [My Copy] (21 Jan 2003) by Morten Kloster, Chao Tang posted to dna evolution th_ibg by chrn on 2008-12-20 21:09:14 as
	In vivo evidence of alternative loop geometries in DNA-protein complexes [My Copy] (10 Feb 2006) by Leonor Saiz, Jose M. G. Vilar posted to dna-protein energy free th_ibg by chrn on 2008-12-20 21:07:30 as
	Identification of DNA-binding protein target sequences by physical effective energy functions. Free energy analysis of lambda repressor-DNA complexes [My Copy] (14 Dec 2007) by E. Moroni, M. Caselle, F. Fogolari posted to dna-protein energy free th_ibg by chrn on 2008-12-20 21:05:05 as
	DNA nano-mechanics: how proteins deform the double helix [My Copy] (17 Dec 2008) by Nils B. Becker, Ralf Everaers posted to dna-protein elasticity th_ibg by chrn on 2008-12-20 21:04:16 as
	Description of non-specific DNA-protein interaction and facilitated diffusion with a dynamical model [My Copy] (19 Nov 2008) by Ana-Maria Florescu, Marc Joyeux posted to dna-protein non-specific th_ibg by chrn on 2008-12-20 21:02:44 as
	Quantum Effects and Genetics Code: Dynamics and Information Transfer in DNA Replication [My Copy] (3 Nov 2006) by S. Mayburov, C. Nicolini, V. Sivozhelezov posted to dna proton th_ibg tocheck tunneling by chrn on 2008-12-20 20:31:42 as
	Energetics of Protein-DNA Interactions [My Copy] (30 Nov 2006) by Jason E. Donald, William W. Chen, Eugene I. Shakhnovich posted to dna-protein th_ibg by chrn on 2008-12-20 20:15:19 as
	Noise-filtering features of transcription regulation in the yeast S. cerevisiae [My Copy] (29 Mar 2007) by Erik Aurell, Aymeric F. D'herouel, Claes Malmnas, Massimo Vergassola posted to th_ibg transcription by chrn on 2008-12-20 20:12:00 as
	Multiscale modeling of biopolymer translocation through a nanopore [My Copy] (7 Mar 2007) by Maria Fyta, Simone Melchionna, Efthimios Kaxiras, Sauro Succi posted to nanonpore th_ibg translocation by chrn on 2008-12-20 20:10:55 as
	Multilevel Deconstruction of the In Vivo Behavior of Looped DNA-Protein Complexes [My Copy] (18 Apr 2007) by Leonor Saiz, Jose M. G. Vilar posted to dna-protein th_ibg toread by chrn on 2008-12-20 20:02:11 as
	Modeling transcription factor binding events to DNA using a random walker/jumper representation on a 1D/2D lattice with different affinity sites [My Copy] (9 Aug 2007) by Vahid Rezania, Jack Tuszynski, Michael Hendzel posted to dna-protein th_ibg toread by chrn on 2008-12-20 19:50:38 as along with 1 person cottrell
	Prediction of DNA-binding residues from sequence [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i347-353. by Yanay Ofran, Venkatesh Mysore, Burkhard Rost posted to dna-binding dna-protein prediction sequence-specific th_ibg by chrn on 2008-08-25 16:31:41 as along with 3 people aalibes kaarsinogen GustavoLacerda
	A structural taxonomy of DNA-binding domains. [My Copy] Nature, Vol. 353, No. 6346. (24 October 1991), pp. 715-719. by S. C. Harrison posted to dna-binding dna-protein review th_ibg by chrn on 2008-07-06 13:12:14 as
	Structural Basis of Core Promoter Recognition in a Primitive Eukaryote [My Copy] Cell (November 2003), pp. 413-424. by M. A. Schumacher, A. O. T. Lau, P. J. Johnson posted to dna-binding dna-protein th_ibg by chrn on 2008-07-06 13:09:29 as
	Recognition of Nucleic Acid Bases and Base-pairs by Hydrogen Bonding to Amino Acid Side-chains [My Copy] Journal of Molecular Biology, Vol. 327, No. 4. (4 April 2003), pp. 781-796. by Alan C. Cheng, William W. Chen, Cynthia N. Fuhrmann, Alan D. Frankel posted to dna-binding dna-protein th_ibg by chrn on 2008-07-06 13:07:30 as
	Using structural motif templates to identify proteins with DNA binding function. [My Copy] Nucleic Acids Res, Vol. 31, No. 11. (1 June 2003), pp. 2811-2823. by S. Jones, J. A. Barker, I. Nobeli, J. M. Thornton posted to dna-binding dna-protein th_ibg by chrn on 2008-07-06 12:21:06 as along with 1 person medic0747
	Detecting DNA-binding helix-turn-helix structural motifs using sequence and structure information [My Copy] Nucleic Acids Research, Vol. 33, No. 7. (2005), pp. 2129-2140. by Marialuisa Pellegrini-Calace, Janet M. Thornton posted to dna-binding dna-protein helix-turn-helix hmm th_ibg by chrn on 2008-07-06 11:56:30 as

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dna-protein	15
dna-binding	6
transcription	5
factor	3
all-atom	2
dna	2
energy	2
evolution	2
free	2
toread	2
complex	1
dna-dendrimer	1
elasticity	1
helix-turn-helix	1
hmm	1
model	1
nanonpore	1
non-specific	1
nuclear	1
pore	1
prediction	1
proton	1
review	1
sequence-specific	1
tocheck	1
translocation	1
tunneling	1

Tag th_ibg [30 articles] Export

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