Tag tiling-array [30 articles] Export Sort

Recent papers classified by the tag tiling-array.

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	Origins and functional impact of copy number variation in the human genome [My Copy] Nature In Nature, Vol. advance online publication (07 October 2009) by Donald F. Conrad, Dalila Pinto, Richard Redon, et al.Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T. Daniel Andrews, Chris Barnes, Peter Campbell, Tomas Fitzgerald, Min Hu, Chun H. Ihm, Kati Kristiansson, Daniel G. MacArthur, Jeffrey R. MacDonald, Ifejinelo Onyiah, Andy W. Pang, Sam Robson, Kathy Stirrups, Armand Valsesia, Klaudia Walter, John Wei, Chris Tyler-Smith, Nigel P. Carter, Charles Lee, Stephen W. Scherer, Matthew E. Hurles posted to tiling-array normal human-genome database-genomic-variants cnv 1kb-cnv by frohike on 2009-10-14 12:14:11 as along with 22 people and 1 group Annab n00c Zephyrus gthorisson vplagnol biovils psique chvlyl daed daforerog zufar jessopher DrRichardBadge operon colinveal sf11 sameersoi polivares dswan qayub bpcusack rdiaz Journal picks
	ChIP-chip: Data, Model, and Analysis [My Copy] Biometrics, Vol. 63, No. 3. (September 2007), pp. 787-796. by Ming Zheng, Leah O. Barrera, Bing Ren, Ying N. Wu posted to tiling-array tf microarray chip-chip algorithm by humburg on 2009-09-10 08:07:10 as along with 3 people huali guhjy caseybrown
	An efficient pseudomedian filter for tiling microrrays [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (07 June 2007), 186. by Thomas Royce, Nicholas Carriero, Mark Gerstein posted to tiling-array sliding-window microarray algorithm by humburg on 2009-09-08 23:36:23 as along with 1 person GeeSharpMinor
	High-resolution computational models of genome binding events [My Copy] Nat Biotech, Vol. 24, No. 8. (09 August 2006), pp. 963-970. by Yuan Qi, Alex Rolfe, Kenzie D. Macisaac, et al.Georg K. Gerber, Dmitry Pokholok, Julia Zeitlinger, Timothy Danford, Robin D. Dowell, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted to tiling-array microarray chip-chip algorithm by humburg on 2009-09-02 07:22:55 as along with 10 people and 1 group arthegall arsyed Scis0000002 siebert Stew jfr wnpx ccr caseybrown inesdesantiago Bioinformatics - CRUK
	Transcriptional landscape estimation from tiling array data using a model of signal shift and drift. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 18. (15 September 2009), pp. 2341-2347. by Pierre Nicolas, Aurélie Leduc, Stéphane Robin, Simon Rasmussen, Hanne Jarmer, Philippe Bessières posted to tiling-array microarray gene-expression algorithm by humburg on 2009-09-01 06:54:20 as along with 2 people rolandkrause rdiaz
	Chipper: discovering transcription-factor targets from chromatin immunoprecipitation microarrays using variance stabilization [My Copy] Genome Biology, Vol. 6, No. 11. (2005), R96. by Francis Gibbons, Markus Proft, Kevin Struhl, Frederick Roth posted to tiling-array microarray chip-chip algorithm by humburg on 2009-09-01 05:30:46 as along with 3 people and 1 group nklee oelemento blobbybirdman Myxo group
	ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data [My Copy] Genome Biology, Vol. 6, No. 11. (2005), R97. by Michael Buck, Andrew Nobel, Jason Lieb posted to tiling-array microarray algorithm by humburg on 2009-09-01 05:25:06 as along with 3 people and 1 group ashishanand antonkratz kengg Plantandetc
	Genome-wide Map of Nucleosome Acetylation and Methylation in Yeast [My Copy] Cell, Vol. 122, No. 4. (26 August 2005), pp. 517-527. by Dmitry K. Pokholok, Christopher T. Harbison, Stuart Levine, et al.Megan Cole, Nancy M. Hannett, Tong I. Lee, George W. Bell, Kimberly Walker, P. Alex Rolfe, Elizabeth Herbolsheimer posted to yeast tiling-array nucleosomes microarray chromatin-structure by humburg on 2009-09-01 05:07:21 as along with 6 people and 1 group hagechouchin443 nucleosome kengg koller olympos redfish99213 Plantandetc
	Multiple testing methods for ChIP-Chip high density oligonucleotide array data. [My Copy] J Comput Biol, Vol. 13, No. 3. (April 2006), pp. 579-613. by S. Keleş, M. J. van der Laan, S. Dudoit, S. E. Cawley posted to tiling-array multiple-testing microarray analysis by humburg on 2009-09-01 03:13:23 as along with 1 person and 1 group kengg Plantandetc
	Differential analysis for high density tiling microarray data [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (24 September 2007), 359. by Srinka Ghosh, Heather A. Hirsch, Edward A. Sekinger, Philipp Kapranov, Kevin Struhl, Thomas R. Gingeras posted to tiling-array microarray analysis by humburg on 2009-09-01 02:56:11 as along with 4 people ashishanand jfr bertelsen GeeSharpMinor
	A comprehensive transcript index of the human genome generated using microarrays and computational approaches [My Copy] Genome Biology, Vol. 5, No. 10. (2004), R73. by Eric Schadt, Stephen Edwards, Debraj Guhathakurta, et al.Dan Holder, Lisa Ying, Vladimir Svetnik, Amy Leonardson, Kyle Hart, Archie Russell, Guoya Li, Guy Cavet, John Castle, Paul Mcdonagh, Zhengyan Kan, Ronghua Chen, Andrew Kasarskis, Mihai Margarint, Ramon Caceres, Jason Johnson, Christopher Armour, Philip G. Engele, Nicholas Tsinoremas, Daniel Shoemaker posted to tiling-array microarray human gene-expression by humburg on 2009-08-28 09:17:08 as along with 4 people and 1 group daforerog inesdesantiago jfr kaspermunch Bioinformatics
	Nucleosome positioning in human HOX gene clusters [My Copy] Genome Research, Vol. 18, No. 10. (22 October 2008), pp. 1554-1561. by Peter V. Kharchenko, Caroline J. Woo, Michael Y. Tolstorukov, Robert E. Kingston, Peter J. Park posted to tiling-array nucleosomes microarray chromatin-structure chip-chip by humburg on 2009-08-28 05:06:31 as along with 2 people inesdesantiago aalibes
	Genome-Scale Identification of Nucleosome Positions in S. cerevisiae [My Copy] Science, Vol. 309, No. 5734. (22 July 2005), pp. 626-630. by Guo-Cheng Yuan, Yuen-Jong Liu, Michael F. Dion, et al.Michael D. Slack, Lani F. Wu, Steven J. Altschuler, Oliver J. Rando posted to tiling-array nucleosomes microarray chromatin-structure chip-chip by humburg on 2009-08-26 01:48:47 as along with 8 people hagechouchin443 ilyashl aalibes koller olympos redfish99213 epigenetics elzodw
	Comments on sequence normalization of tiling array expression [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2171-2173. by Don Gilbert, Andreas Rechtsteiner posted to tiling-array normalization by humburg on 2009-08-21 08:03:06 as along with 3 people and 1 group djkt rdiaz dswan Bioinformatics
	TileProbe: modeling tiling array probe effects using publicly available data [My Copy] Bioinformatics (9 July 2009), btp425. by Jennifer T. Judy, Hongkai Ji posted to chip-chip probe-effect tiling-array by humburg on 2009-08-10 23:30:46 as
	Double error shrinkage method for identifying protein binding sites observed by tiling arrays with limited replication [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2486-2491. by Youngchul Kim, Stefan Bekiranov, Jae K. Lee, Taesung Park posted to algorithm chip-chip tiling-array by humburg on 2009-08-10 23:15:47 as along with 1 person djkt
	Distinctive chromatin in human sperm packages genes for embryo development [My Copy] Nature, Vol. 460, No. 7254. (23 July 2009), pp. 473-478. by Saher S. Hammoud, David A. Nix, Haiying Zhang, Jahnvi Purwar, Douglas T. Carrell, Bradley R. Cairns posted to chip-chip chip-seq chromatin-structure high-throughput-sequencing human tiling-array by humburg on 2009-07-22 23:36:23 as along with 6 people absterga jd222 leliavski fenghezi djkt dchughes
	Epigenetic profiling at mouse imprinted gene clusters reveals novel epigenetic and genetic features at differentially methylated regions. [My Copy] Genome research, Vol. 19, No. 8. (19 August 2009), pp. 1374-1383. by Scott V. Dindot, Richard Person, Mark Strivens, Rejinaldo Garcia, Arthur L. Beaudet posted to cgi chip-chip cpg epigenetics h3k4me3 h3k9me3 imprinting microarray tiling-array by rschulz on 2009-07-15 09:33:18 as along with 3 people inesdesantiago clearbluespring taylor73
	Comparison of sequence-dependent tiling array normalization approaches [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 204. by Ho R. Chung, Martin Vingron posted to microarray normalization tiling-array by humburg on 2009-07-01 00:57:44 as along with 3 people and 1 group ptrobajo reyez ppgardne Journal picks
	Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana [My Copy] Genome Biology, Vol. 10, No. 6. (2009), R62. by Xiaoyu Zhang, Yana Bernatavichute, Shawn Cokus, Matteo Pellegrini, Steven Jacobsen posted to arabidopsis chip-chip chromatin-structure tiling-array by humburg on 2009-06-10 07:48:36 as along with 3 people megraw lptolik vinithepooh
	Improved ChIP-chip analysis by a mixture model approach. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 173. by W. Sun, M. J. Buck, M. Patel, I. J. Davis posted to algorithm chip-chip tiling-array by humburg on 2009-06-08 23:08:49 as along with 1 person guhjy
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted to algorithm chip-chip chip-seq high-throughput-sequencing hmm tf tiling-array by humburg on 2009-05-19 00:33:55 as along with 13 people and 1 group bsamal jfr tonamswish rdiaz fpattyn jcbarret guhjy hendrik85 inesdesantiago nklee polivares ewilban1 idonaldson Journal picks
	Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data [My Copy] Bioinformatics (28 April 2009), btp276. by Michael Seifert, Jens Keilwagen, Marc Strickert, Ivo Grosse posted to algorithm arabidopsis chip-chip hmm tf tiling-array yeast by humburg on 2009-05-19 00:24:37 as
	Histone modifications at human enhancers reflect global cell-type-specific gene expression. [My Copy] Nature, Vol. 459, No. 7243. (7 May 2009), pp. 108-112. by Nathaniel D. Heintzman, Gary C. Hon, R. David Hawkins, et al.Pouya Kheradpour, Alexander Stark, Lindsey F. Harp, Zhen Ye, Leonard K. Lee, Rhona K. Stuart, Christina W. Ching, Keith A. Ching, Jessica E. Antosiewicz-Bourget, Hui Liu, Xinmin Zhang, Roland D. Green, Victor V. Lobanenkov, Ron Stewart, James A. Thomson, Gregory E. Crawford, Manolis Kellis, Bing Ren posted to chip-chip chromatin-structure tiling-array by humburg on 2009-05-04 02:40:15 as along with 18 people and 2 groups gderwin rpatward akakak suizifish RyuOgawa inesdesantiago gdb djkt tonamswish t08681mn akundaje leliavski scjparker fenghezi TRHvidsten frohike idonaldson sebastien_vigneau Epigenetics CTCF
	TileMap: create chromosomal map of tiling array hybridizations [My Copy] Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3629-3636. by Hongkai Ji, Wing H. Wong posted to tiling-array transfrag by GeeSharpMinor on 2008-09-17 16:20:40 as along with 5 people JohnBallam tuck dquest caseybrown inesdesantiago
	The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci [My Copy] Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 732-745. by Joel S. Rozowsky, Daniel Newburger, Fred Sayward, et al.Jiaqian Wu, Greg Jordan, Jan O. Korbel, Ugrappa Nagalakshmi, Jin Yang, Deyou Zheng, Roderic Guigo, Thomas R. Gingeras, Sherman Weissman, Perry Miller, Michael Snyder, Mark B. Gerstein posted to tiling-array transfrag by GeeSharpMinor on 2008-09-17 16:00:24 as along with 5 people and 1 group djkt olympos ghattem jasonflannick gjuggler Bioinformatics
	Genome-Wide Analysis of Nucleotide-Level Variation in Commonly Used Saccharomyces cerevisiae Strains. [My Copy] PLoS ONE, Vol. 2 (2007) by J. Schacherer, D. M. Ruderfer, D. Gresham, K. Dolinski, D. Botstein, L. Kruglyak posted to yeast tiling-array snp reviewed mutation insertion-deletion genetic-variation by michaelbarton on 2008-04-01 16:27:55 as along with 2 people and 1 group stajich dmc Durbin group
	High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer. [My Copy] Proc Natl Acad Sci U S A, Vol. 105, No. 1. (8 January 2008), pp. 252-257. by T. A. Rauch, X. Zhong, X. Wu, et al.M. Wang, K. H. Kernstine, Z. Wang, A. D. Riggs, G. P. Pfeifer posted to array cancer carcinoma cgh cpg hypermethylation hypomethylation island lung methylation microarray sqamous tiling-array by blackm0k on 2008-02-15 11:40:38 as along with 1 person oelemento
	Applications of DNA tiling arrays for whole-genome analysis. [My Copy] Genomics, Vol. 85, No. 1. (January 2005), pp. 1-15. by T. C. Mockler, S. Chan, A. Sundaresan, H. Chen, S. E. Jacobsen, J. R. Ecker posted to cgh comparative genomic hybridization methylation polymorphism tiling-array whole-genome by blackm0k on 2008-02-11 11:42:52 as along with 6 people and 1 group JohnBallam lptolik jwestbrook mdimon jo_davies bozdagd King_Lab
	Biological function of unannotated transcription during the early development of Drosophila melanogaster [My Copy] Nature Genetics, Vol. 38, No. 10. (03 September 2006), pp. 1151-1158. by Robert J. Manak, Sujit Dike, Victor Sementchenko, et al.Philipp Kapranov, Frederic Biemar, Jeff Long, Jill Cheng, Ian Bell, Srinka Ghosh, Antonio Piccolboni, Thomas R. Gingeras posted to transcription tiling-array drosophila by wrowell to the group Cline_lab on 2007-08-22 20:10:10 as along with 11 people and 6 groups roys ThomasDOtto inesdesantiago daveGerrard GeeSharpMinor emptyhb dpollard neveaire djkt Stew xingxu BergmanLab Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience

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chip-chip	22
microarray	15
algorithm	11
chromatin-structure	7
yeast	6
epigenetics	5
methylation	5
chromatin	4
genome	4
h3k4me3	4
nucleosomes	4
acetylation	3
drosophila	3
h3ac	3
h3k27me3	3
histone	3
hmm	3
hox	3
hoxd	3
mouse	3
nucleosome	3
nucleosome-positioning	3
temporal-colinearity	3
tf	3
analysis	2
arabidopsis	2
cgh	2
chip-seq	2
cpg	2
gene-expression	2
high-throughput-sequencing	2
human	2
normalization	2
transcription	2
transfrag	2
1kb-cnv	1
array	1
cancer	1
carcinoma	1
cgi	1
cnv	1
comparative	1
ctcf	1
database-genomic-variants	1
genetic-variation	1
genomic	1
h3k9me3	1
human-genome	1
hybridization	1
hypermethylation	1
hypomethylation	1
imprinting	1
insertion-deletion	1
insulator	1
island	1
lung	1
multiple-testing	1
mutation	1
normal	1
organization	1
parameter-estimation	1
polymorphism	1
probe-effect	1
regulatory-elements	1
reviewed	1
sliding-window	1
snp	1
sqamous	1
tfbs	1
transcription-factor	1
whole-genome	1

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