Tag to-be-tagged [31 articles] Export

Recent papers classified by the tag to-be-tagged.

	Looking at enzymes from the inside out: the proximity of catalytic residues to the molecular centroid can be used for detection of active sites and enzyme-ligand interfaces. [My Copy] J Mol Biol, Vol. 351, No. 2. (12 August 2005), pp. 309-326. by A. Ben-Shimon, M. Eisenstein posted to to-be-tagged by nickolay on 2007-01-18 19:07:34 as along with 3 people and 1 group baaden Einat Evangelia structural_bioinformatics
	What makes a binding site a binding site? [My Copy] Curr Opin Struct Biol, Vol. 5, No. 6. (December 1995), pp. 825-829. by D. Ringe posted to to-be-tagged by nickolay on 2007-01-17 20:28:20 as
	POCKET: a computer graphics method for identifying and displaying protein cavities and their surrounding amino acids. [My Copy] J Mol Graph, Vol. 10, No. 4. (December 1992), pp. 229-234. by D. G. Levitt, L. J. Banaszak posted to to-be-tagged by nickolay on 2006-12-04 21:16:26 as along with 2 people sriram_s tjimenez
	In silico identification of novel EGFR inhibitors with antiproliferative activity against cancer cells [My Copy] Bioorganic & Medicinal Chemistry Letters, Vol. 16, No. 7. (1 April 2006), pp. 1969-1974. by Claudio N. Cavasotto, Maria A. Ortiz, Ruben A. Abagyan, Javier F. Piedrafita posted to to-be-tagged by nickolay on 2006-12-04 21:05:53 as
	Complexity of free energy landscapes of peptides revealed by nonlinear principal component analysis [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 65, No. 4. (2006), pp. 898-913. by Phuong H. Nguyen posted to to-be-tagged by nickolay on 2006-11-29 16:29:46 as along with 2 people ladab Diego_Prada
	Travel depth, a new shape descriptor for macromolecules: application to ligand binding. [My Copy] J Mol Biol, Vol. 362, No. 3. (22 September 2006), pp. 441-458. by R. G. Coleman, K. A. Sharp posted to to-be-tagged by nickolay on 2006-11-11 22:06:34 as along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
	Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design. [My Copy] Nucleic Acids Res, Vol. 33, No. 18. (2005), pp. 5861-5867. by Gong Cheng, Bin Qian, Ram Samudrala, David Baker posted to to-be-tagged by nickolay on 2006-10-26 01:40:54 as along with 6 people and 3 groups bicko Einat marcius alexg sriram_s ladab structural_bioinformatics BioinfoCIPF SGU-CIPF
	Predicting protein interaction sites: binding hot-spots in protein-protein and protein-ligand interfaces [My Copy] Bioinformatics, Vol. 22, No. 11. (1 June 2006), pp. 1335-1342. by Nicholas J. Burgoyne, Richard M. Jackson posted to to-be-tagged by nickolay on 2006-10-04 17:19:48 as along with 7 people jinghu_fandm iaolier timg bicko conkymacro marti ladab
	Functional restraints on the patterns of amino acid substitutions: Application to sequence-structure homology recognition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 4. (2005), pp. 722-731. by Vijayalakshmi Chelliah, Tom Blundell, Kenji Mizuguchi posted to to-be-tagged by nickolay on 2006-10-04 17:15:41 as along with 1 person michaelbarton
	Are Acidic and Basic Groups in Buried Proteins Predicted to be Ionized? [My Copy] Journal of Molecular Biology, Vol. 348, No. 5. (20 May 2005), pp. 1283-1298. by Jinrang Kim, Junjun Mao, M. R. Gunner posted to to-be-tagged by nickolay on 2006-10-04 17:14:00 as along with 1 person flbarroso
	An amino acid has two sides: a new 2D measure provides a different view of solvent exposure. [My Copy] Proteins, Vol. 59, No. 1. (1 April 2005), pp. 38-48. by T. Hamelryck posted to to-be-tagged by nickolay on 2006-10-04 17:09:24 as along with 3 people karbak massivemayhem gisle
	Catalysing new reactions during evolution: economy of residues and mechanism. [My Copy] J Mol Biol, Vol. 331, No. 4. (22 August 2003), pp. 829-860. by G. J. Bartlett, N. Borkakoti, J. M. Thornton posted to to-be-tagged p1 by nickolay on 2006-10-04 16:46:28 as along with 2 people gbart jwm
	Functional annotation of proteomic sequences based on consensus of sequence and structural analysis [My Copy] Brief Bioinform, Vol. 3, No. 1. (1 January 2002), pp. 32-44. by David H. Kitson, Azat Badretdinov, Zhan-Yang Zhu, et al.Mikhail Velikanov, David J. Edwards, Krzysztof Olszewski, Sandor Szalma, Lisa Yan posted to to-be-tagged by nickolay on 2006-09-05 19:32:29 as
	A novel statistical ligand-binding site predictor: application to ATP-binding sites [My Copy] Protein Engineering, Design and Selection, Vol. 18, No. 2. (February 2005), pp. 65-70. by Ting Guo, Yanxin Shi, Zhirong Sun posted to to-be-tagged by nickolay on 2006-09-05 19:31:14 as along with 1 person srdshigella
	Functional analysis of the Escherichia coli genome using the sequence-to-structure-to-function paradigm: identification of proteins exhibiting the glutaredoxin/thioredoxin disulfide oxidoreductase activity. [My Copy] J Mol Biol, Vol. 282, No. 4. (2 October 1998), pp. 703-711. by J. S. Fetrow, A. Godzik, J. Skolnick posted to to-be-tagged by nickolay on 2006-09-05 18:39:16 as
	Quadratic Shape Descriptors. 1. Rapid Superposition of Dissimilar Molecules Using Geometrically Invariant Surface Descriptors [My Copy] J. Chem. Inf. Model., Vol. 40, No. 3. (22 May 2000), pp. 644-658. by B. B. Goldman, W. T. Wipke posted to to-be-tagged by nickolay on 2006-09-05 18:30:01 as along with 1 person timg
	Structure-based Active Site Profiles for Genome Analysis and Functional Family Subclassification [My Copy] Journal of Molecular Biology, Vol. 334, No. 3. (28 November 2003), pp. 387-401. by Stephen A. Cammer, Brian T. Hoffman, Jeffrey A. Speir, et al.Mary A. Canady, Melanie R. Nelson, Stacy Knutson, Marijo Gallina, Susan M. Baxter, Jacquelyn S. Fetrow posted to to-be-tagged by nickolay on 2006-09-05 18:28:46 as
	'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments [My Copy] Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 129-133. by Jean-Christophe Gelly, Alexandre G. de Brevern, Serge Hazout posted to to-be-tagged by nickolay on 2006-07-24 18:18:25 as along with 6 people and 4 groups ana barry dimka ttjoseph marcius choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Thirty-plus functional families from a single motif. [My Copy] Protein Sci, Vol. 9, No. 12. (December 2000), pp. 2470-2476. by L. Yu, C. Gaitatzes, E. Neer, T. F. Smith posted to to-be-tagged by nickolay on 2006-06-29 22:39:41 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	An accurate, sensitive, and scalable method to identify functional sites in protein structures. [My Copy] Journal of molecular biology, Vol. 326, No. 1. (7 February 2003), pp. 255-261. by H. Yao, D. M. Kristensen, I. Mihalek, et al.M. E. Sowa, C. Shaw, M. Kimmel, L. Kavraki, O. Lichtarge posted to to-be-tagged by nickolay on 2006-03-01 19:11:47 as along with 5 people qluo chrn bicko beeblebrox sriram_s
	Automatic methods for predicting functionally important residues. [My Copy] J Mol Biol, Vol. 326, No. 4. (28 February 2003), pp. 1289-1302. by A. del Sol Mesa, F. Pazos, A. Valencia posted to to-be-tagged by nickolay on 2006-03-01 19:10:26 as along with 2 people kaarsinogen tjimenez
	Evolutionary predictions of binding surfaces and interactions. [My Copy] Curr Opin Struct Biol, Vol. 12, No. 1. (February 2002), pp. 21-27. by O. Lichtarge, M. E. Sowa posted to to-be-tagged by nickolay on 2006-03-01 19:09:14 as along with 1 person siebertm
	Equivalent binding sites reveal convergently evolved interaction motifs [My Copy] Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 550-555. by Andreas Henschel, Wan K. Kim, Michael Schroeder posted to to-be-tagged by nickolay on 2006-02-28 22:19:13 as along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
	A new method to detect related function among proteins independent of sequence and fold homology. [My Copy] J Mol Biol, Vol. 323, No. 2. (18 October 2002), pp. 387-406. by S. Schmitt, D. Kuhn, G. Klebe posted to to-be-tagged by nickolay on 2006-02-12 01:37:47 as along with 1 person tjimenez
	Distilling the essential features of a protein surface for improving protein-ligand docking, scoring, and virtual screening. [My Copy] J Comput Aided Mol Des, Vol. 16, No. 12. (December 2002), pp. 883-902. by M. I. Zavodszky, P. C. Sanschagrin, R. S. Korde, L. A. Kuhn posted to to-be-tagged by nickolay on 2005-12-16 21:44:47 as along with 2 people BragilMassoud blackbart
	Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design. [My Copy] Protein Sci, Vol. 7, No. 9. (September 1998), pp. 1884-1897. by J. Liang, H. Edelsbrunner, C. Woodward posted to to-be-tagged by nickolay on 2005-12-16 21:30:07 as along with 2 people tjimenez higueruelo
	A model for statistical significance of local similarities in structure. [My Copy] J Mol Biol, Vol. 326, No. 5. (7 March 2003), pp. 1307-1316. by A. Stark, S. Sunyaev, R. B. Russell posted to to-be-tagged by nickolay on 2005-12-16 21:16:30 as along with 8 people and 2 groups karbak ana nigham chad_davis thamelry robert scis0000001 siebertm structural_bioinformatics Bioinformatics
	SURFCOMP: a novel graph-based approach to molecular surface comparison. [My Copy] J Chem Inf Comput Sci, Vol. 44, No. 3. (n 2004), pp. 837-847. by C. Hofbauer, H. Lohninger, A. Aszódi posted to to-be-tagged by nickolay on 2005-12-16 21:13:27 as
	Comparison of protein surfaces using a genetic algorithm [My Copy] Journal of Computer-Aided Molecular Design, Vol. 11, No. 6. (November 1997), pp. 557-569. by Poirrette, P. J. Artymiuk, D. W. Rice, P. Willett posted to to-be-tagged by nickolay on 2005-12-16 21:12:09 as
	Three-dimensional profiles: a new tool to identify protein surface similarities [My Copy] Journal of Molecular Biology, Vol. 284, No. 4. (11 December 1998), pp. 1211-1221. by Manuel de Rinaldis, Gabriele Ausiello, Gianni Cesareni, Manuela Helmer-Citterich posted to to-be-tagged by nickolay on 2005-12-16 21:08:09 as along with 2 people carlescorbi Evangelia
	SiteEngines: recognition and comparison of binding sites and protein-protein interfaces. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by A. Shulman-Peleg, R. Nussinov, H. J. Wolfson posted to to-be-tagged by nickolay on 2005-12-16 19:35:41 as along with 1 person bicko

Note: You may cite this page as: http://www.citeulike.org/tag/to-be-tagged

Tag to-be-tagged [31 articles] Export

Related Tags