Tag transcript [49 articles] Export

Recent papers classified by the tag transcript.

	Effects of dihydrotestosterone on skeletal muscle transcriptome in mice measured by serial analysis of gene expression [My Copy] J Mol Endocrinol, Vol. 36, No. 2. (1 April 2006), pp. 247-259. by M. Yoshioka, A. Boivin, P. Ye, F. Labrie, J. St-Amand posted to transcript mice expression dht androgen by FW_Gibb on 2009-10-30 10:02:59 as
	Mammalian miRNA RISC recruits CAF1 and PABP to affect PABP-dependent deadenylation. [My Copy] Molecular cell, Vol. 35, No. 6. (24 September 2009), pp. 868-880. by Marc R. Fabian, Géraldine Mathonnet, Thomas Sundermeier, et al.Hansruedi Mathys, Jakob T. Zipprich, Yuri V. Svitkin, Fabiola Rivas, Martin Jinek, James Wohlschlegel, Jennifer A. Doudna, Chyi-Ying Y. Chen, Ann-Bin B. Shyu, John R. Yates, Gregory J. Hannon, Witold Filipowicz, Thomas F. Duchaine, Nahum Sonenberg posted to transcript regulation posttranscriptional polya mirna mammalian gene_regulation by stajich to the group Mycology on 2009-10-25 20:34:07 as along with 3 people hcoller toni_marco valeriehilgers
	Global Transcript Profiles of Fat in Monozygotic Twins Discordant for BMI: Pathways behind Acquired Obesity [My Copy] PLoS Med, Vol. 5, No. 3. (11 March 2008), e51. by Kirsi H. Pietiläinen, Jussi Naukkarinen, Aila Rissanen, et al.Juha Saharinen, Pekka Ellonen, Heli Keränen, Anu Suomalainen, Alexandra Götz, Tapani Suortti, Hannele Yki-Järvinen, Matej Orešič, Jaakko Kaprio, Leena Peltonen posted to twins transcript profles pathways obesity monozygotic global fat discordant bmi by dswan on 2009-08-26 14:29:38 as along with 1 person Terkko
	Transcript length bias in RNA-seq data confounds systems biology [My Copy] Biology Direct, Vol. 4, No. 1. (16 April 2009), 14. by Alicia Oshlack, Matthew Wakefield posted to bias biology data length rna-seq systems transcript by dswan on 2009-08-11 10:28:09 as along with 12 people and 1 group jwfoley juokcho debasis stubrown jmcq guhjy woodson8 n00c ghattem xingxu cajunsushi bandrewfox SIMR bioinformatics
	Regulation of MYCN expression in human neuroblastoma cells. [My Copy] BMC cancer, Vol. 9 (2009) by Joannes F. Jacobs, Hans van Bokhoven, Frank N. van Leeuwen, et al.Christina A. Hulsbergen-van de Kaa, I. Jolanda de Vries, Gosse J. Adema, Peter M. Hoogerbrugge, Arjan P. de Brouwer posted to expression mycn neuroblastoma splice transcript variant by fpattyn to the group Neuroblastoma on 2009-08-10 09:37:01 as
	Stem cell transcriptome profiling via massive-scale mRNA sequencing [My Copy] Nature Methods, Vol. 5, No. 7. (30 May 2008), pp. 613-619. by Nicole Cloonan, Alistair R. R. Forrest, Gabriel Kolle, et al.Brooke B. A. Gardiner, Geoffrey J. Faulkner, Mellissa K. Brown, Darrin F. Taylor, Anita L. Steptoe, Shivangi Wani, Graeme Bethel, Alan J. Robertson, Andrew C. Perkins, Stephen J. Bruce, Clarence C. Lee, Swati S. Ranade, Heather E. Peckham, Jonathan M. Manning, Kevin J. McKernan, Sean M. Grimmond posted to mrna-seq orientation specific strand transcript by burak on 2009-06-11 18:47:00 as along with 20 people jwfoley heliopais jmanning2k stubrown cassj n00c natstreet poschm felsani jbhiatt vplagnol rschulz umit myourshaw megraw inesdesantiago GeeSharpMinor caseybrown guhjy gdb
	Differential splicing using whole-transcript microarrays. [My Copy] BMC bioinformatics, Vol. 10 (22 May 2009), 156. by M. D. Robinson, T. P. Speed posted to affymetrix algorithm differential exon gene microarray rma splicing transcript whole by dswan to the group Bioinformatics on 2009-06-09 11:29:40 as along with 5 people guhjy lwaldron chrisamiller humburg neils
	New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites. [My Copy] Genome research, Vol. 19, No. 7. (31 July 2009), pp. 1175-1183. by Inhan Lee, Subramanian S. Ajay, Jong In I. Yook, et al.Hyun Sil S. Kim, Su Hyung H. Hong, Nam Hee H. Kim, Saravana M. Dhanasekaran, Arul M. Chinnaiyan, Brian D. Athey posted to binding_site mirna site target transcript by stajich to the group Mycology on 2009-05-28 23:04:16 as along with 14 people and 4 groups ebcgantman jfr ashkelon13 heliopais megraw fenghezi fpattyn tmmurali ppgardne tonamswish Einat daforerog valeriehilgers ealloza Neuroblastoma Journal picks microRNA cube_and_beyond
	Features of Mammalian microRNA Promoters Emerge from Polymerase II Chromatin Immunoprecipitation Data [My Copy] PLoS ONE, Vol. 4, No. 4. (23 April 2009), e5279. by David L. Corcoran, Kusum V. Pandit, Ben Gordon, Arindam Bhattacharjee, Naftali Kaminski, Panayiotis V. Benos posted to chip-chip mirna primary transcript by samgj on 2009-04-27 10:01:15 as along with 4 people and 1 group heliopais guhjy tonamswish daforerog microRNA
	C19MC microRNAs are processed from introns of large Pol-II, non-protein-coding transcripts. [My Copy] Nucleic acids research (1 April 2009) by Marie-Line L. Bortolin-Cavaillé, Marie Dance, Michel Weber, Jérôme Cavaillé posted to mirna primary transcript by samgj on 2009-04-03 13:57:34 as
	Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs. [My Copy] Nucleic acids research (20 March 2009) by Bogna Szarzynska, Lukasz Sobkowiak, Bikram Datt D. Pant, et al.Salma Balazadeh, Wolf-Rüdiger R. Scheible, Bernd Mueller-Roeber, Artur Jarmolowski, Zofia Szweykowska-Kulinska posted to mirna plant primary transcript by samgj on 2009-04-02 16:18:22 as
	Apolipoprotein A-1 of Japanese quail: cDNA sequence and modulation of tissue expression by cholesterol feeding. [My Copy] Bioscience, biotechnology, and biochemistry, Vol. 61, No. 2. (February 1997), pp. 286-290. by H. Oku, T. Toda, J. Nagata, et al.M. Ishikawa, K. Neyazaki, C. Shinjyo, I. Chinen posted to apo-ai apolipoprotein chicken cholesterol expression induction intestine quail transcript by Schmidtc on 2009-03-10 14:22:41 as
	TGF-beta induces apoptosis in human B cells by transcriptional regulation of BIK and BCL-X(L). [My Copy] Cell death and differentiation (9 January 2009) by L C C. Spender, D I I. O'Brien, D Simpson, et al.D Dutt, C D D. Gregory, M J J. Allday, L J J. Clark, G J J. Inman posted to apoptosis bclxl bik regulation spender09pdf tgf-beta transcript by paulschlesinger on 2009-01-17 01:03:03 as
	Evidence for common short natural trans sense-antisense pairing between transcripts from protein coding genes [My Copy] Genome Biology, Vol. 9, No. 12. (2008) by Ping Wang, Shanye Yin, Zhenguo Zhang, et al.Dedong Xin, Landian Hu, Xiangyin Kong, Laurence Hurst posted to antisense sense transcript transcription by sebastien_vigneau on 2009-01-08 21:29:29 as along with 6 people inesdesantiago coela druvus natstreet acanario ealloza
	High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer [My Copy] PLoS ONE, Vol. 4, No. 1. (1 January 2009), e4108. by Shin-ichi Hashimoto, Wei Qu, Budrul Ahsan, et al.Katsumi Ogoshi, Atsushi Sasaki, Yoichiro Nakatani, Yongjun Lee, Masako Ogawa, Akio Ametani, Yutaka Suzuki, Sumio Sugano, Clarence C. Lee, Robert C. Nutter, Shinichi Morishita, Kouji Matsushima posted to ng_sequencer transcript transcriptome by Cortel on 2009-01-04 13:38:32 as along with 8 people and 1 group jwfoley tprpip guhjy poschm jfr jasontsai GustavoLacerda stajich Mycology
	Chromatin- and Transcription-Related Factors Repress Transcription from within Coding Regions throughout the Saccharomyces cerevisiae Genome [My Copy] PLoS Biology, Vol. 6, No. 11. (1 November 2008), e277. by Vanessa Cheung, Gordon Chua, Nizar N. Batada, et al.Christian R. Landry, Stephen W. Michnick, Timothy R. Hughes, Fred Winston posted to cryptic protmoter-in-coding-region transcript yeast by xianjun on 2008-11-25 18:36:10 as along with 4 people inesdesantiago djkt bpcusack caseybrown
	A Third Approach to Gene Prediction Suggests Thousands of Additional Human Transcribed Regions [My Copy] PLoS Comput Biol, Vol. 2, No. 3. (17 March 2006), e18. by Gustavo Glusman, Shizhen Qin, M. Raafat El-Gewely, et al.Andrew F. Siegel, Jared C. Roach, Leroy Hood, Arian F. A. Smit posted to algorithm analysis chowder feast greens pasta prediction roast sequence transcript by GustavoG on 2008-11-22 07:46:50 as along with 3 people and 2 groups cisevol jfr penka BergmanLab Nie
	MiR-433 and miR-127 Arise from Independent Overlapping Primary Transcripts Encoded by the miR-433-127 Locus [My Copy] PLoS ONE, Vol. 3, No. 10. (30 October 2008), e3574. by Guisheng Song, Li Wang posted to mirna primary transcript by samgj on 2008-11-03 10:47:30 as along with 1 person and 1 group heliopais microRNA
	Explicit Referencing and Shared Materials as Factors for Successful Chat-Based CSCL with Learning Protocols [My Copy] In Proceedings of World Conference on Educational Multimedia, Hypermedia and Telecommunications 2007 (June 2007), pp. 1897-1901. by Michael Oehl, Hans R. Pfister edited by Craig Montgomerie, Jane Seale posted to 2007 chat cscl learning referencing transcript by Torsten_Holmer on 2008-10-13 14:48:03 as
	Adaptive evolution of transcription factor binding sites. [My Copy] BMC Evol Biol, Vol. 4, No. 1. (28 October 2004) by J. Berg, S. Willmann, M. Lässig posted to binding factor sites tfbs transcript by bmajoros on 2008-09-19 19:41:35 as along with 4 people and 1 group kaarsinogen jjray discreteonyxorb cisevol cis-regulatory-evolution
	Optimal spliced alignments of short sequence reads [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i174-180. by Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Ratsch posted to alternative-splicing mapper sequencing software transcript by cthachuk on 2008-09-10 23:22:00 as along with 12 people and 1 group GustavoLacerda darshan n00c natstreet druvus lukaswindhager malcook jmcq nmohelli caseybrown Ema Neeperando SIMR bioinformatics
	Decoding genes with coexpression networks and metabolomics - 'majority report by precogs'. [My Copy] Trends in plant science, Vol. 13, No. 1. (January 2008), pp. 36-43. by K. Saito, M. Y. Hirai, K. Yonekura-Sakakibara posted to 08 co-express function gene_ metabol -omics transcript by klo on 2008-08-08 10:40:16 as along with 2 people and 1 group Keywan guhjy Ondex SABR - Bioenergy project
	ESTGenes: Alternative Splicing From ESTs in Ensembl [My Copy] Genome Research, Vol. 14, No. 5. (May 2004), pp. 976-987. by Eduardo Eyras, Mario Caccamo, Val Curwen, Michele Clamp posted to algorithm bioinformatics ensembl est transcript by sebastien_vigneau on 2008-07-23 21:58:58 as along with 2 people orzenil Cortel
	Transcript-level annotation of Affymetrix probesets improves the interpretation of gene expression data [My Copy] BMC Bioinformatics, Vol. 8 (11 June 2007), 194. by Hui Yu, Feng Wang, Kang Tu, Lu Xie, Yuan-Yuan Li, Yi-Xue Li posted to annotation interpretation microarray probe transcript by bertelsen on 2008-06-10 21:07:26 as along with 3 people guhjy jfr heliopais
	Systematic Identification of mRNAs Recruited to Argonaute 2 by Specific microRNAs and Corresponding Changes in Transcript Abundance [My Copy] PLoS ONE, Vol. 3, No. 5. (7 May 2008), e2126. by David G. Hendrickson, Daniel J. Hogan, Daniel Herschlag, James E. Ferrell, Patrick O. Brown posted to argonaute microrna transcript by maralena on 2008-05-15 11:56:44 as along with 5 people fenghezi diaz0058 jfr bootsy yuwang
	Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae. [My Copy] Nat Biotechnol, Vol. 22, No. 1. (January 2004), pp. 86-92. by J. Ihmels, R. Levy, N. Barkai posted to metabolic network saccharomyces transcript by hryk on 2008-05-12 15:06:28 as along with 7 people and 4 groups icases adepace nickluscombe koller arne shung siebert EisenLab EBI-regulation TNT dIEMoSIRIS
	Noncoding but nonexpendable: transcriptional regulation by large noncoding RNA in eukaryotes. [My Copy] Biochemistry and cell biology = Biochimie et biologie cellulaire, Vol. 85, No. 4. (August 2007), pp. 484-496. by O. Yazgan, J. E. Krebs posted to non-protein-coding ncrna regulation transcript by bertelsen on 2008-04-29 23:33:51 as
	Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarrays [My Copy] BMC Bioinformatics, Vol. 8 (29 March 2007), 108. by Jun Lu, Joseph C. Lee, Marc L. Salit, Margaret C. Cam posted to annotation high-resolution microarray oligonucleotide probe transcript by bertelsen on 2008-04-28 22:15:44 as along with 5 people and 1 group heliopais guhjy jfr frohike ghattem Bioinformatics
	AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by V. Le Texier, J. J. Riethoven, V. Kumanduri, et al.C. Gopalakrishnan, F. Lopez, D. Gautheret, T. A. Thanaraj posted to alternative pattern polyadenylation splicing transcript variants by bertelsen on 2008-04-20 23:34:03 as
	Translational control of intron splicing in eukaryotes. [My Copy] Nature, Vol. 451, No. 7176. (17 January 2008), pp. 359-362. by Olivier Jaillon, Khaled Bouhouche, Jean-François F. Gout, et al.Jean-Marc M. Aury, Benjamin Noel, Baptiste Saudemont, Mariusz Nowacki, Vincent Serrano, Betina M. Porcel, Béatrice Ségurens, Anne Le Mouël, Gersende Lepère, Vincent Schächter, Mireille Bétermier, Jean Cohen, Patrick Wincker, Linda Sperling, Laurent Duret, Eric Meyer posted to intron intron_evolution splicing transcript translational_control by stajich to the group Mycology on 2008-01-16 20:58:12 as along with 5 people gjuggler mclarenv seitentaisei raistrick zhouyu
	Origin of phenotypes: genes and transcripts. [My Copy] Genome research, Vol. 17, No. 6. (June 2007), pp. 682-690. by T. R. Gingeras posted to definition gene genome genome-wide genotype micro-rna mrna phenotype transcript transcription by xico on 2007-08-28 22:06:17 as along with 10 people and 4 groups inesdesantiago klo guhjy balicea dchughes michC ghattem Garamonfok Jporci bertelsen Bioinformatics WetBiology G4ID Genetics-of-Gambling
	Analysis of allelic differential expression in human white blood cells [My Copy] Genome Res., Vol. 16, No. 3. (1 March 2006), pp. 331-339. by Krishna P. V. Pant, Heng Tao, Erica J. Beilharz, Dennis G. Ballinger, David R. Cox, Kelly A. Frazer posted to allele specific transcript by qfwills on 2007-06-25 10:55:27 as along with 5 people and 1 group xwbcn RMGraze emarker mimulus_99 dpollard RockmanLab
	Allele-specific gene expression differences in humans. [My Copy] Hum Mol Genet, Vol. 13 Spec No 2 (1 October 2004) by P. R. Buckland posted to allele specific transcript by qfwills on 2007-06-25 10:54:30 as along with 3 people athma mimulus_99 ramensky
	Mapping common regulatory variants to human haplotypes [My Copy] Hum. Mol. Genet., Vol. 14, No. 24. (15 December 2005), pp. 3963-3971. by Tomi Pastinen, Bing Ge, Scott Gurd, et al.Tiffany Gaudin, Carole Dore, Mathieu Lemire, Pierre Lepage, Eef Harmsen, Thomas J. Hudson posted to allele specific transcript by qfwills on 2007-06-25 10:52:25 as along with 4 people vplagnol qmwwallace emarker mimulus_99
	Allelic variation in human gene expression. [My Copy] Science (New York, N.Y.), Vol. 297, No. 5584. (16 August 2002) by H. Yan, W. Yuan, V. E. Velculescu, B. Vogelstein, K. W. Kinzler posted to allelle specific transcript by qfwills on 2007-06-25 10:40:55 as along with 3 people jrwagner snuppepuppan mimulus_99
	Allele-specific gene expression uncovered [My Copy] Trends in Genetics, Vol. 20, No. 3. (March 2004), pp. 113-116. by Julian C. Knight posted to allelle specific transcript by qfwills on 2007-06-25 10:39:09 as
	Allelic variation in gene expression identified through computational analysis of the dbEST database [My Copy] Genomics, Vol. 86, No. 5. (November 2005), pp. 518-527. by Wei Lin, Howard H. Yang, Maxwell P. Lee posted to allelle specific transcript by qfwills on 2007-06-25 10:37:44 as
	Survey of allelic expression using EST mining. [My Copy] Genome research, Vol. 15, No. 11. (1 November 2005), pp. 1584-1591. by Bing Ge, Scott Gurd, Tiffany Gaudin, et al.Carole Dore, Pierre Lepage, Eef Harmsen, Thomas J. Hudson, Tomi Pastinen posted to allelle specific transcript by qfwills on 2007-06-25 10:35:52 as along with 3 people vplagnol gruberjd ashandanj
	Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae. [My Copy] Plant Cell, Vol. 15, No. 2. (February 2003), pp. 317-330. by Y. Tao, Z. Xie, W. Chen, et al.J. Glazebrook, H. S. Chang, B. Han, T. Zhu, G. Zou, F. Katagiri posted to basal r transcript by saru on 2007-06-18 02:24:43 as
	Regulation of transcript elongation through cooperative and ordered recruitment of cofactors [My Copy] J. Biol. Chem. (29 May 2007), M701420200. by Manish Sharma, Anuja A. George, Badri N. Singh, Naresh C. Sahoo, Kanury V. Rao posted to cofactor cofactors cooperative elongation mrna recruitment rnapii transcript by xico on 2007-06-04 22:40:54 as along with 1 person and 1 group epigenetics WetBiology
	Haploid transcripts persist in mature human spermatozoa. [My Copy] Mol Hum Reprod, Vol. 3, No. 1. (January 1997), pp. 15-19. by S. M. Wykes, D. W. Visscher, S. A. Krawetz posted to human protamine rna spermatozoa tnp transcript by uz_labu_laimi on 2007-03-04 22:48:07 as
	Parallels among positive-strand RNA viruses, reverse-transcribing viruses and double-stranded RNA viruses [My Copy] Nature Reviews Microbiology, Vol. 4, No. 5. (03 April 2006), pp. 371-382. by Paul Ahlquist posted to transcript by saru on 2006-07-23 09:51:54 as along with 1 person rapodaca
	Network motifs are enriched with transcription factors whose transcripts have short half-lives. [My Copy] Trends Genet, Vol. 21, No. 9. (September 2005), pp. 492-495. by E. Wang, E. Purisima posted to motifs transcript by comb on 2006-05-09 14:39:20 as along with 1 person maralena
	Employment opportunities for non-coding RNAs [My Copy] FEBS Letters, Vol. 567, No. 1. (1 June 2004), pp. 27-34. by C. Morey posted to antisense inactivation intergenic non-coding rna transcript transcription x-chromosome by arcticrasta on 2006-01-27 10:41:22 as along with 4 people and 1 group GeeSharpMinor LeightonP evaf dortsjennifer ecotoxurbo
	Alternative polyadenylation of cyclooxygenase-2 [My Copy] Nucleic Acids Research, Vol. 33, No. 8. (2005), pp. 2565-2579. by Tyra Hall-Pogar, Haibo Zhang, Bin Tian, Carol S. Lutz posted to diversity isoforms polya transcript by Cortel on 2005-05-19 10:11:14 as
	Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals [My Copy] Nucleic Acids Research, Vol. 33, No. 8. (2005), pp. 2355-2363. by Mitsuteru Nakao, Roberto A. Barrero, Yuri Mukai, Chie Motono, Makiko Suwa, Kenta Nakai posted to as author database diversity isoforms localization splice subcellular transcript by Cortel on 2005-05-19 10:05:06 as
	The impact of very short alternative splicing on protein structures and functions in the human genome. [My Copy] Trends Genet, Vol. 20, No. 5. (May 2004), pp. 232-236. by F. Wen, F. Li, H. Xia, X. Lu, X. Zhang, Y. Li posted to as diversity isoforms splice transcript by Cortel on 2005-05-19 09:37:25 as along with 1 person setar
	Understanding alternative splicing: towards a cellular code [My Copy] Nature Reviews Molecular Cell Biology, Vol. 6, No. 5. (01 May 2005), pp. 386-398. by Arianne J. Matlin, Francis Clark, Christopher W. J. Smith posted to diversity transcript by Cortel on 2005-05-08 14:38:14 as along with 2 people and 2 groups kaspermunch xico Bioinformatics WetBiology
	Do natural antisense transcripts make sense in eukaryotes? [My Copy] Gene, Vol. 211, No. 1. (28 April 1998), pp. 1-9. by Christine Vanhee-Brossollet, Catherine Vaquero posted to antisense eukaryote nat transcript by cassj on 2005-03-29 22:23:25 as

Note: You may cite this page as: http://www.citeulike.org/tag/transcript

mirna	8
specific	8
expression	7
splicing	7
binding	5
exon	5
factor	5
genome	5
sites	5
tfbs	5
algorithm	4
allelle	4
bioinformatics	4
diversity	4
gene	4
microarray	4
mrna	4
primary	4
regulation	4
rna-seq	4
splice	4
transcription	4
allele	3
antisense	3
isoforms	3
mouse	3
polya	3
utr	3
affymetrix	2
annotation	2
as	2
binding_site	2
cofactor	2
cofactors	2
cooperative	2
cryptic	2
definition	2
differential	2
elongation	2
gene_regulation	2
genome-wide	2
genotype	2
mammalian	2
micro-rna	2
mycn	2
neuroblastoma	2
phenotype	2
posttranscriptional	2
probe	2
protmoter-in-coding-region	2
recruitment	2
rma	2
rna	2
rnapii	2
site	2
target	2
variant	2
whole	2
yeast	2
2007	1
alternative-splicing	1
analysis	1
apo-ai	1
bias	1
biology	1
chat	1
chip-chip	1
chowder	1
co-express	1
discordant	1
eukaryote	1
fat	1
feast	1
function	1
high-resolution	1
human	1
induction	1
interpretation	1
length	1
localization	1
mapper	1
metabolic	1
mice	1
microrna	1
monozygotic	1
motifs	1
ncrna	1
non-coding	1
obesity	1
oligonucleotide	1
pasta	1
pathways	1
polyadenylation	1
profles	1
protamine	1
referencing	1
software	1
strand	1
transcriptome	1
translational_control	1

Tag transcript [49 articles] Export

Related Tags