Tag transcription [at least 200 articles] Export

Recent papers classified by the tag transcription.

	Direct RNA sequencing. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 814-818. by Fatih Ozsolak, Adam R. Platt, Dan R. Jones, et al.Jeffrey G. Reifenberger, Lauryn E. Sass, Peter McInerney, John F. Thompson, Jayson Bowers, Mirna Jarosz, Patrice M. Milos posted to transcription 2009nov by pmalkus on 2009-11-20 22:25:27 as along with 20 people and 2 groups hzoltan manduca gotgenes jwfoley GeeSharpMinor mlc39 colinveal reyez TRHvidsten djkt ppgardne dchughes heliopais vingron nzm n00c lp2 toni_marco dswan kinestetika Journal picks Bioinformatics - CRUK
	HIGH-RESOLUTION NUCLEOSOME MAPPING REVEALS TRANSCRIPTION-DEPENDENT PROMOTER PACKAGING. [My Copy] Genome research (21 October 2009) by Assaf Weiner, Amanda Hughes, Moran Yassour, Oliver Rando, Nir Friedman posted to transcription promoter nucleosome-positioning nucleosome by sebastien_vigneau to the group Epigenetics on 2009-11-19 17:08:33 as along with 1 person idonaldson
	A wave of nascent transcription on activated human genes [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 43. (27 October 2009), pp. 18357-18361. by Youichiro Wada, Yoshihiro Ohta, Meng Xu, et al.Shuichi Tsutsumi, Takashi Minami, Kenji Inoue, Daisuke Komura, Jun'ichi Kitakami, Nobuhiko Oshida, Argyris Papantonis, Akashi Izumi, Mika Kobayashi, Hiroko Meguro, Yasuharu Kanki, Imari Mimura, Kazuki Yamamoto, Chikage Mataki, Takao Hamakubo, Katsuhiko Shirahige, Hiroyuki Aburatani, Hiroshi Kimura, Tatsuhiko Kodama, Peter R. Cook, Sigeo Ihara posted to transcription by pkm on 2009-11-19 16:03:53 as along with 4 people and 2 groups daed inesdesantiago gbloeb cvaldes CTCF Chromatin
	Transcription of genes coding for metabolic key functions in Nitrosomonas europaea during aerobic and anaerobic growth. [My Copy] Journal of molecular microbiology and biotechnology, Vol. 16, No. 3-4. (2009), pp. 187-197. by Sonja Beyer, Stefan Gilch, Ortwin Meyer, Ingo Schmidt posted to transcription metabolism anaerobic adaptation by aztek on 2009-11-18 17:22:39 as along with 1 person and 1 group hongkeun_park CUBES
	The Evolutionary Rates of Eukaryotic RNA Polymerases and of Their Transcription Factors Are Affected by the Level of Concerted Evolution of the Genes They Transcribe [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2515-2520. by Robert Carter, Guy Drouin posted to transcription gene_conversion concerted_evolution by dandaman on 2009-11-18 16:59:35 as along with 3 people inesdesantiago djkt samgj
	Initiation of decay of Bacillus subtilis trp leader RNA [My Copy] Journal of Biological Chemistry, Vol. 282, No. 28. (13 July 2007), pp. 20238-20244. by Gintaras Deikus, David H. Bechhofer posted to trp transcription termination subtilis stability rna leader decay bacillus by Winzer on 2009-11-18 11:00:03 as
	Chromosomal organization is shaped by the transcription regulatory network. [My Copy] Trends in genetics : TIG, Vol. 21, No. 3. (March 2005), pp. 138-142. by Ruth Hershberg, Esti Yeger-Lotem, Hanah Margalit posted to transcription_units transcription_regulation transcription microbiology by idoerg on 2009-11-17 15:08:18 as along with 1 person PetrovLab
	A molecular model of chromatin organisation and transcription: <I>how a multi-RNA polymerase II machine transcribes and remodels the beta-globin locus during development</I> [My Copy] BioEssays, Vol. 31, No. 12. (2009), pp. 1357-1366. by Hua Wong, Peter J. Winn, Julien Mozziconacci posted to transcriptional-regulation transcription histone chromatin by dchughes on 2009-11-17 11:04:54 as
	The transcription unit architecture of the Escherichia coli genome [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1043-1049. by Byung-Kwan Cho, Karsten Zengler, Yu Qiu, et al.Young S. Park, Eric M. Knight, Christian L. Barrett, Yuan Gao, Bernhard O. Palsson posted to transcription ecoli by karthikraman on 2009-11-17 10:51:04 as along with 5 people venancio JeremyZucker dbikard jjray rsaito
	Increased rate of human mutations where DNA and RNA polymerases collide. [My Copy] Trends in genetics : TIG (22 October 2009) by Frank Grønlund G. Jørgensen, Mikkel H. Schierup posted to transcription replication projx mutation genomics genometrics evolution by operon on 2009-11-16 18:44:12 as
	High Local Concentration: A Fundamental Strategy of Life [My Copy] Journal of Molecular Biology (31 October 2009) by Stefan Oehler, Benno Müller-Hill posted to transcriptional_control transcription protein_dna_interactions local_concentration 13-nov-09 by bdessailly to the group Orengo Group Journal Picks on 2009-11-13 10:02:59 as along with 1 person RamuAnandakrishnan
	Single molecule measurement of the âspeed limitâ of DNA polymerase [My Copy] Proceedings of the National Academy of Sciences (11 November 2009) by Jerrod J. Schwartz, Stephen R. Quake posted to transcription speed real_time dna_polymerase_enzyme burst by samubernard on 2009-11-13 09:01:41 as along with 5 people and 1 group jjray Fernando_FF alexknight JonD samjlord moernerlab
	Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling [My Copy] Cell, Vol. 139, No. 3. (30 October 2009), pp. 610-622. by Shaohui Hu, Zhi Xie, Akishi Onishi, et al.Xueping Yu, Lizhi Jiang, Jimmy Lin, Hee-sool Rho, Crystal Woodard, Hong Wang, Jun-Seop Jeong posted to transcription interaction erk dna by renatomilani on 2009-11-11 14:42:59 as along with 3 people tmmurali idonaldson maximilianh
	Transcriptional Regulation of the Clostridium cellulolyticum cip-cel Operon: a Complex Mechanism Involving a Catabolite-Responsive Element [My Copy] J. Bacteriol., Vol. 190, No. 5. (1 March 2008), pp. 1499-1506. by Laetitia Abdou, Celine Boileau, Pascale de Philip, Sandrine Pages, Henri-Pierre Fierobe, Chantal Tardif posted to transcription regulation cipc-cel by katrinschwarz on 2009-11-11 11:14:39 as along with 1 person Winzer
	A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells [My Copy] Cell, Vol. 130, No. 1. (13 July 2007), pp. 77-88. by M. Guenther, S. Levine, L. Boyer, R. Jaenisch, R. Young posted to transcription by rsaito on 2009-11-11 06:41:47 as along with 6 people hkuhn RyuOgawa clearbluespring gderwin margaritis inesdesantiago
	Transcribing the genome. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 185-185. by Alex Eccleston, Magdalena Skipper posted to transcription review nucleosome by rsaito on 2009-11-11 06:38:41 as along with 1 person rdiaz
	A Visual Data Mining Tool that Facilitates Reconstruction of Transcription Regulatory Networks [My Copy] PLoS ONE, Vol. 3, No. 3. (5 March 2008), e1717. by Daniel C. Jupiter, Vincent VanBuren posted to transcription regulatory_networks reconstruction gene_regulatory_network expression_patterns data_mining correlation_network by trogdor on 2009-11-11 02:24:22 as along with 3 people daforerog guhjy ptrobajo
	Cell cycle control of Kaposi's sarcoma-associated herpesvirus latency transcription by CTCF-cohesin interactions. [My Copy] Journal of virology, Vol. 83, No. 12. (June 2009), pp. 6199-6210. by Hyojeung Kang, Paul M. Lieberman posted to transcription kshv herpesvirus ctcf cohesin cell-cycle by sebastien_vigneau to the group CTCF on 2009-11-10 22:50:05 as
	Transcription, Translation, and the Evolution of Specialists and Generalists [My Copy] Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2661-2678. by Shaobin Zhong, Stephen P. Miller, Daniel E. Dykhuizen, Antony M. Dean posted to translation transcription stress_response gene_expression evolution e_coli bacteria by jjray on 2009-11-10 16:14:56 as
	Nucleosomal fluctuations govern the transcription dynamics of RNA polymerase II. [My Copy] Science (New York, N.Y.), Vol. 325, No. 5940. (31 July 2009), pp. 626-628. by Courtney Hodges, Lacramioara Bintu, Lucyna Lubkowska, Mikhail Kashlev, Carlos Bustamante posted to transcription polii nucleosole by sebastien_vigneau on 2009-11-09 20:47:38 as along with 8 people and 1 group skoch3 emptyhb jbhiatt pkner absterga leliavski TRHvidsten RamuAnandakrishnan Koch_Lab
	Transcription factories are nuclear subcompartments that remain in the absence of transcription. [My Copy] Genes & development, Vol. 22, No. 1. (1 January 2008), pp. 20-25. by Jennifer A. Mitchell, Peter Fraser posted to transcription rnapii loci factories 1inbib by lydka on 2009-11-09 03:25:00 as along with 2 people dchughes sebastien_vigneau
	Students transcribing tasks: noticing fluency, accuracy, and complexity [My Copy] ELT J (3 November 2009), ccp081. by Christopher Stillwell, Brad Curabba, Kamsin Alexander, et al.Andrew Kidd, Euna Kim, Paul Stone, Christopher Wyle posted to transcription fluency complexity accuracy by rickl on 2009-11-08 11:21:12 as
	Generic eukaryotic core promoter prediction using structural features of DNA [My Copy] Genome Research, Vol. 18, No. 2. (20 February 2008), pp. 310-323. by Thomas Abeel, Yvan Saeys, Eric Bonnet, Pierre Rouze, Yves Van de Peer posted to transcription promoter genomics bioinformatics by timflutre on 2009-11-06 09:53:22 as along with 8 people chvlyl hagechouchin443 rsaito tonamswish cjeans cabbagezs maximilianh idonaldson
	Invariant Distribution of Promoter Activities in Escherichia coli [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (23 October 2009), e1000545. by Alon Zaslaver, Shai Kaplan, Anat Bren, et al.Adrian Jinich, Avi Mayo, Erez Dekel, Uri Alon, Shalev Itzkovitz posted to transcription promoters gene_expression escherichia_coli by dbikard on 2009-11-05 20:14:08 as along with 1 person jjray
	Pre-mRNA processing reaches back to transcription and ahead to translation. [My Copy] Cell, Vol. 136, No. 4. (20 February 2009), pp. 688-700. by M. J. Moore, N. J. Proudfoot posted to translation transcription splicing rna polyadenylation by aprickett on 2009-11-05 15:04:36 as along with 2 people heliopais rschulz
	Simpler mode of inheritance of transcriptional variation in male Drosophila melanogaster [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18577-18582. by Marta L. Wayne, Marina Telonis-Scott, Lisa M. Bono, et al.Larry Harshman, Artyom Kopp, Sergey V. Nuzhdin, Lauren M. McIntyre posted to variability transcription sex_chromosomes drosophila by daveGerrard on 2009-11-05 11:44:50 as along with 3 people operon jbsaltz mimulus_99
	Hypoxia inducible factor 1 alpha (HIF-1alpha) induces corticosteroid-insensitive inflammation via reduction of histone deacetylase-2 (HDAC2) transcription. [My Copy] The Journal of biological chemistry (30 October 2009) by Catherine E. Charron, Pai-Chien C. Chou, David J. Coutts, et al.Vaibhav Kumar, Masako To, Kenichi Akashi, Liao Pinhu, Mark Griffiths, Ian M. Adcock, Peter J. Barnes, Kazuhiro Ito posted to via transcription reduction of inflammation inducible induces hypoxia histone hif-1alpha hdac2 factor deacetylase-2 corticosteroid-insensitive alpha 1 by StemCellWorkstation on 2009-11-04 22:29:26 as
	Hypoxic repression of endothelial nitric-oxide synthase transcription is coupled with eviction of promoter histones. [My Copy] The Journal of biological chemistry (30 October 2009) by Jason E. Fish, Matthew S. Yan, Charles C. Matouk, et al.Rosanne St Bernard, Jyun David D. Ho, Anna Gavryushova, Deepak Srivastava, Philip A. Marsden posted to with transcription synthase repression promoter of nitric-oxide is hypoxic histones eviction endothelial coupled by StemCellWorkstation on 2009-11-04 22:28:56 as
	Hypoxia Induces Transcription Factor ETS-1 via the Activity of Hypoxia-Inducible Factor-1 [My Copy] Biochemical and Biophysical Research Communications, Vol. 289, No. 1. (23 November 2001), pp. 39-43. by M. Oikawa posted to via transcription the of induces hypoxia-inducible hypoxia factor-1 factor ets-1 activity by StemCellWorkstation on 2009-11-04 18:53:32 as
	p16INK4A Sensitizes Human Leukemia Cells to FAS- and Glucocorticoid-induced Apoptosis via Induction of BBC3/Puma and Repression of MCL1 and BCL2 [My Copy] Journal of Biological Chemistry, Vol. 284, No. 45. (6 November 2009), pp. 30933-30940. by Petra Obexer, Judith Hagenbuchner, Martina Rupp, et al.Christina Salvador, Markus Holzner, Martin Deutsch, Verena Porto, Reinhard Kofler, Thomas Unterkircher, Michael J. Ausserlechner posted to transcription puma p16ink4a obexer09pdf mcl-1 apoptosis by paulschlesinger on 2009-10-30 19:14:50 as
	Transcription factor and microRNA motif discovery: The Amadeus platform and a compendium of metazoan target sets [My Copy] Genome Research, Vol. 18, No. 7. (14 July 2008), pp. 1180-1189. by Chaim Linhart, Yonit Halperin, Ron Shamir posted to transcription platform motif microrna metazoan factor discovery amadeus by dolchan on 2009-10-29 17:18:03 as along with 13 people and 1 group roys akshayk wowalz natstreet valeriehilgers jfr ealloza idonaldson maralena fpattyn isimpson tmmurali maximilianh BergmanLab
	Diabetes mellitus due to misfolding of a beta-cell transcription factor: stereospecific frustration of a Schellman motif in HNF-1alpha. [My Copy] Journal of molecular biology, Vol. 362, No. 3. (22 September 2006), pp. 414-429. by Narendra Narayana, Nelson B. Phillips, Qing-xin X. Hua, Wenhua Jia, Michael A. Weiss posted to transcription schellman naraya06pdf motif hnf-1a frustration factor by paulschlesinger on 2009-10-27 23:08:48 as
	Chromatin poises miRNA- and protein-coding genes for expression. [My Copy] Genome research, Vol. 19, No. 10. (27 October 2009), pp. 1742-1751. by Artem Barski, Raja Jothi, Suresh Cuddapah, et al.Kairong Cui, Tae-Young Y. Roh, Dustin E. Schones, Keji Zhao posted to transcription mirna by samgj on 2009-10-27 14:34:21 as along with 9 people and 2 groups tonamswish heliopais polivares megraw inesdesantiago fpattyn djkt fenghezi idonaldson microRNA Neuroblastoma
	Evolution of Eukaryotic Transcription Circuits [My Copy] Science, Vol. 319, No. 5871. (28 March 2008), pp. 1797-1799. by Brian B. Tuch, Hao Li, Alexander D. Johnson posted to yeast transcription selection rewiring review evolution by biomcgary on 2009-10-26 20:27:59 as along with 6 people roys balabu emptyhb AbnerCYH djkt bpcusack
	A nucleoprotein-hairpin in transcription regulation. [My Copy] Journal of structural biology (26 June 2009) by Paloma Gutiérrez Del Arroyo, Marisela Vélez, Oliver Piétrement, Margarita Salas, José L. Carrascosa, Ana Camacho posted to transcription promoter nucleoprotein-hairpin atomic_force_microscopy afm by sebastien_vigneau on 2009-10-26 19:31:08 as
	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. [My Copy] Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816. by E. Encode posted to transcription genomics encode chromatin by daveGerrard on 2009-10-26 09:56:14 as along with 25 people and 2 groups bartjacobse daforerog isimpson sharpton jessopher timhubbard scjparker polivares coela ilyashl aprasad myrtilus daed waszak guhjy jfr chad_davis kengg olympos blobbybirdman shikin fpattyn yevishere elfar eskay Bioinformatics UH - Computational Biology
	Transcription Dynamics [My Copy] Molecular Cell, Vol. 35, No. 6. (24 September 2009), pp. 741-753. by Gordon L. Hager, James G. McNally, Tom Misteli posted to transcriptional-regulation transcription chromatin by dchughes on 2009-10-24 07:47:24 as along with 1 person inesdesantiago
	A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome [My Copy] Genome Research, Vol. 19, No. 3. (4 March 2009), pp. 360-371. by Bryan J. Venters, B. Franklin Pugh posted to yeast transcription rna_polymerase promoter chromatin by venancio on 2009-10-23 23:42:29 as along with 6 people and 1 group TheresaNiederberger cisevol inesdesantiago idonaldson rdowell JustinCrocker BergmanLab
	Reconstructing prokaryotic transcriptional regulatory networks: lessons from actinobacteria [My Copy] Journal of Biology, Vol. 8, No. 3. (15 April 2009), 29. by Thiago Venancio, L. Aravind posted to transcription tfs systems_biology networks evolution bacteria by venancio on 2009-10-23 18:49:31 as along with 1 person robfsouza
	Distinguishing direct versus indirect transcription factorâDNA interactions [My Copy] Genome Research, Vol. 19, No. 11. (3 November 2009), pp. 2090-2100. by Raluca GordÃ¢n, Alexander J. Hartemink, Martha L. Bulyk posted to yeast transcription tfs networks dataset chromatin by venancio on 2009-10-23 18:32:49 as along with 11 people oannes nklee djkt vingron owhitney tmmurali emptyhb idonaldson maximilianh jbhiatt frohike
	Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions [My Copy] Genome Biology, Vol. 10, No. 7. (23 July 2009), R80. by Stewart MacArthur, Xiao Y. Li, Jingyi Li, et al.James Brown, Hou C. Chu, Lucy Zeng, Brandi Grondona, Aaron Hechmer, Lisa Simirenko, Soile Keranen, David Knowles, Mark Stapleton, Peter Bickel, Mark Biggin, Michael Eisen posted to transcription tfs insects drosophila development by venancio on 2009-10-23 18:30:06 as along with 11 people and 2 groups aalibes fenghezi idonaldson daveGerrard megraw scjparker maximilianh djkt isimpson Stew druvus BergmanLab Bioinformatics - CRUK
	Open chromatin encoded in DNA sequence is the signature of 'master' replication origins in human cells [My Copy] Nucl. Acids Res., Vol. 37, No. 18. (1 October 2009), pp. 6064-6075. by Benjamin Audit, Lamia Zaghloul, Cedric Vaillant, et al.Guillaume Chevereau, Yves d'Aubenton-Carafa, Claude Thermes, Alain Arneodo posted to transcription sites replication_origins replication_initiation fragile chromatin by fpattyn on 2009-10-23 10:26:11 as along with 2 people and 2 groups inesdesantiago sebastien_vigneau Epigenetics Journal picks
	Functional organization of the transcriptome in human brain [My Copy] Nature Neuroscience, Vol. 11, No. 11. (12 October 2008), pp. 1271-1282. by Michael C. Oldham, Genevieve Konopka, Kazuya Iwamoto, et al.Peter Langfelder, Tadafumi Kato, Steve Horvath, Daniel H. Geschwind posted to transcriptome transcription regulation neurogenesis human by cassj to the group KCL & UCL Bioinformatics on 2009-10-23 10:24:45 as along with 8 people burak jeremymiller daforerog druvus balicea dubhelix isimpson psique
	Cotranscriptionality: The Transcription Elongation Complex as a Nexus for Nuclear Transactions [My Copy] Vol. 36, No. 2. (23 October 2009), pp. 178-191. by Roberto Perales, David Bentley posted to transcription review nucleus gene_expression eukaryote by jjray on 2009-10-22 21:50:12 as
	A transcription factor affinity-based code for mammalian transcription initiation [My Copy] Genome Research, Vol. 19, No. 4. (13 April 2009), pp. 644-656. by Molly Megraw, Fernando Pereira, Shane T. Jensen, Uwe Ohler, Artemis G. Hatzigeorgiou posted to microrna-transcriptional-regulation transcription_factor transcription microrna-regulation microrna by heliopais on 2009-10-22 14:40:10 as along with 9 people and 1 group guhjy tonamswish rpatward siebert biozhang2001 absterga jbhiatt samgj daforerog microRNA
	Assigning roles to protein mentions: The case of transcription factors [My Copy] Journal of Biomedical Informatics, Vol. 42, No. 5. (10 October 2009), pp. 887-894. by Hui Yang, John Keane, Casey M. Bergman, Goran Nenadic posted to transcription_factors transcription ontology go by operon on 2009-10-21 16:35:26 as along with 3 people and 1 group druvus dullhunk henk-cul dbmi-nlp
	Analysis of combinatorial cis-regulation in synthetic and genomic promoters [My Copy] Nature, Vol. 457, No. 7226. (23 November 2008), pp. 215-218. by Jason Gertz, Eric D. Siggia, Barak A. Cohen posted to yeast transcription synthetic promoter by Vincent_Rouilly on 2009-10-21 11:59:40 as along with 17 people and 4 groups pcarbo emptyhb TRHvidsten rpatward jbhiatt lusk maximilianh roys dpollard druvus sebastien_vigneau pengchy sandersl djkt siebert isimpson xianjun TranscriptionalRegulationWithThermodynamicModels RockmanLab cis-regulatory-evolution microbiology_nijmegen
	Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing. [My Copy] BMC genomics, Vol. 10 (21 January 2009), 37. by Philippe Lefrançois, Ghia M. Euskirchen, Raymond K. Auerbach, et al.Joel Rozowsky, Theodore Gibson, Christopher M. Yellman, Mark Gerstein, Michael Snyder posted to yeast transcription_factors transcription chip-seq by Vincent_Rouilly on 2009-10-20 15:52:37 as along with 5 people guhjy lusk emptyhb WanderingAengus abizar
	Direct methods for studying transcription regulatory proteins and RNA polymerase in bacteria [My Copy] Current Opinion in Microbiology, Vol. 12, No. 5. (15 October 2009), pp. 531-535. by David C. Grainger, David J. Lee, Stephen J. W. Busby posted to transcription_factors transcription rnap promoter chip by Vincent_Rouilly on 2009-10-20 11:06:59 as
	Transcription of macrophage IGF-I exon 1 is positively regulated by the 5'-untranslated region and negatively regulated by the 5'-flanking region [My Copy] Am J Physiol Lung Cell Mol Physiol, Vol. 288, No. 6. (1 June 2005), pp. L1089-1098. by Murry W. Wynes, David W. H. Riches posted to transcription macrophage lung ipf igf gif-1 fibrosis by amromeo on 2009-10-19 16:36:46 as

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regulation	431
factor	223
review	194
network	167
yeast	165
chromatin	162
evolution	150
promoter	140
expression	132
drosophila	125
gene	107
binding	106
rna	106
for-the-review	95
biodegradation	90
elegans	83
nematode	80
celegans	79
c_elegans	78
caenorhabditis_elegans	78
wormbase	78
genomics	77
article	74
genome	72
polymerase	64
dna	62
motif	55
microarray	54
regulatory	53
epigenetics	52
microrna	51
networks	51
cancer	50
translation	49
human	48
bioinformatics	47
elongation	47
bacteria	46
protein	46
transcriptome	46
histone	45
prediction	45
cloned_genes	42
transcriptional-regulation	42
factors	41
gene_regulation	41
mrna	41
antisense	39
development	39
gene_expression	39
integration	37
initiation	35
methylation	35
genetics	33
noise	32
site	32
gene-expression	31
nucleosome	31
tfbs	31
conserved	30
trna	30
mouse	29
model	28
mirna	27
rnap	27
dna_sequence	26
activator	25
chromosomes	25
splicing	25
transcription_regulation	25
activation	24
cell	24
analysis	23
biology	23
mediator	23
ncrna	23
sequencing	23
cisreg	22
tf	22
transcription_factor	22
replication	21
sequence	21
breast	20
differentiation	20
genome-wide	20
mammals	20
receptor	20
remodeling	20
genetic	19
heat_shock	19
hematopoiesis	19
imprinting	19
mathematical_model	19
structure	19
enhancers	18
myc	18
nucleus	18
polii	18
termination	18
transcription_factors	18

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