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	Generating specificity and diversity in the transcriptional response to hypoxia. [My Copy] Nature reviews. Genetics, Vol. 10, No. 12. (3 December 2009), pp. 821-832. by Urban Lendahl, Kian Leong L. Lee, Henry Yang, Lorenz Poellinger posted to transcriptional to the specificity response in hypoxia generating diversity and by StemCellWorkstation on 2009-11-04 22:23:07 as along with 1 person guhjy
	Arabidopsis gene co-expression network and its functional modules. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 346. by Linyong Mao, John L. Van Hemert, Sudhansu Dash, Julie A. Dickerson posted to transcriptional dataset co-expression arabidopsis by venancio on 2009-10-23 18:26:48 as along with 6 people hchuang icecrown zchen dolchan Borelli druvus
	In silico comparative genomic analysis of GABAA receptor transcriptional regulation. [My Copy] BMC genomics, Vol. 8 (30 June 2007), 203. by Christopher J. Joyce posted to transcriptional regulation receptor in_silico gaba by tuannn on 2009-09-22 18:34:07 as
	A predictive model for transcriptional control of physiology in a free living cell. [My Copy] Cell, Vol. 131, No. 7. (28 December 2007), pp. 1354-1365. by Richard Bonneau, Marc T. Facciotti, David J. Reiss, et al.Amy K. Schmid, Min Pan, Amardeep Kaur, Vesteinn Thorsson, Paul Shannon, Michael H. Johnson, J. Christopher Bare, William Longabaugh, Madhavi Vuthoori, Kenia Whitehead, Aviv Madar, Lena Suzuki, Tetsuya Mori, Dong-Eun E. Chang, Jocelyne Diruggiero, Carl H. Johnson, Leroy Hood, Nitin S. Baliga posted to transcriptional systems physiology model biology by ptrobajo on 2009-09-17 09:32:01 as along with 12 people hyunjin4jc adampah lawraga edwardmorrissey guhjy tmmurali raiyar oelemento emptyhb megraw roys Borelli
	Transcriptional Regulatory Circuits: Predicting Numbers from Alphabets [My Copy] Science In Science, Vol. 325, No. 5939. (24 July 2009), pp. 429-432. by Harold D. Kim, Tal Shay, Erin K. O'Shea, Aviv Regev posted to transcriptional review regulatory network by ptrobajo on 2009-09-13 21:50:51 as along with 16 people and 1 group pkm rdiaz bborgeson guhjy sergiun emptyhb greg cajunsushi Borelli leliavski TRHvidsten jjray apocapoc fenghezi dswan daforerog Gene Regulation
	From DNA sequence to transcriptional behaviour: a quantitative approach. [My Copy] Nature reviews. Genetics, Vol. 10, No. 7. (01 July 2009), pp. 443-456. by Eran Segal, Jonathan Widom posted to transcriptional sequence review model dna binding by ptrobajo on 2009-09-12 21:15:31 as along with 11 people and 1 group rdiaz guhjy dakelley megraw ilyashl francemirko talponer tonamswish clearbluespring TRHvidsten fenghezi TranscriptionalRegulationWithThermodynamicModels
	Modelling transcriptional regulation with a mixture of factor analyzers and variational bayesian expectation maximization. [My Copy] EURASIP journal on bioinformatics & systems biology (2009) by Kuang Lin, Dirk Husmeier posted to transcriptional regulation mixture factor analysis by ptrobajo on 2009-09-12 20:57:48 as
	The transcriptional program underlying the physiology of clostridial sporulation [My Copy] Genome Biology, Vol. 9, No. 7. (16 July 2008), R114. by Shawn Jones, Carlos Paredes, Bryan Tracy, et al.Nathan Cheng, Ryan Sillers, Ryan Senger, Eleftherios Papoutsakis posted to transcriptional sporulation physiology clostridium clostridial array acetobutylicum by Winzer on 2009-09-11 13:13:17 as along with 1 person Blobman
	Unbiased Reconstruction of a Mammalian Transcriptional Network Mediating Pathogen Responses [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 257-263. by Ido Amit, Manuel Garber, Nicolas Chevrier, et al.Ana P. Leite, Yoni Donner, Thomas Eisenhaure, Mitchell Guttman, Jennifer K. Grenier, Weibo Li, Or Zuk, Lisa A. Schubert, Brian Birditt, Tal Shay, Alon Goren, Xiaolan Zhang, Zachary Smith, Raquel Deering, Rebecca C. McDonald, Moran Cabili, Bradley E. Bernstein, John L. Rinn, Alex Meissner, David E. Root, Nir Hacohen, Aviv Regev posted to transcriptional perturbation pathogen network mouse by ptrobajo on 2009-09-11 13:11:27 as along with 10 people friendpine xianjun inesdesantiago leliavski TRHvidsten agonzale gbloeb roys natgoodman tmmurali
	DNA Array-Based Transcriptional Analysis of Asporogenous, Nonsolventogenic Clostridium acetobutylicum Strains SKO1 and M5 [My Copy] J. Bacteriol., Vol. 185, No. 15. (1 August 2003), pp. 4539-4547. by Christopher A. Tomas, Keith V. Alsaker, Hendrik P. J. Bonarius, et al.Wouter T. Hendriksen, He Yang, Jeffrey A. Beamish, Carlos J. Paredes, Eleftherios T. Papoutsakis posted to transcriptional sporulation solventogenesis sko1 nonsolventogenic m5 clostridium asporogenous array analysis acetobutylicum by Winzer on 2009-09-11 11:33:17 as
	Identification of yeast transcriptional regulation networks using multivariate random forests. [My Copy] PLoS computational biology, Vol. 5, No. 6. (19 June 2009), e1000414. by Yuanyuan Xiao, Mark R. Segal posted to yeast transcriptional random network multivariate inference forest cls-anton by ptrobajo on 2009-09-06 21:08:26 as along with 3 people roys TRHvidsten djkt
	Inferring the role of transcription factors in regulatory networks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (06 May 2008), 228. by Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel posted to gene inference networks regulation regulatory transcriptional by dolchan on 2009-07-26 05:13:53 as along with 6 people guhjy idonaldson renatomilani heliopais maralena isimpson
	Using transcriptional profiling to develop a diagnostic test of operational tolerance in liver transplant recipients. [My Copy] The Journal of clinical investigation, Vol. 118, No. 8. (August 2008), pp. 2845-2857. by M. Martínez-Llordella, J. J. Lozano, I. Puig-Pey, et al.G. Orlando, G. Tisone, J. Lerut, C. Benítez, J. A. Pons, P. Parrilla, P. Ramírez, M. Bruguera, A. Rimola, A. Sánchez-Fueyo posted to bagboosting diagnostic liver operational pam profiling recipients test tolerance transcriptional transplant by dswan on 2009-06-23 14:32:06 as
	Promoter-specific transcriptional interference and c-myc gene silencing by siRNAs in human cells [My Copy] The EMBO Journal (21 May 2009) by Sara Napoli, Chiara Pastori, Marco Magistri, Giuseppina M. Carbone, Carlo V. Catapano posted to myc promoter rnai silencing sirna transcriptional by fpattyn on 2009-06-17 12:57:54 as
	Differential Cofactor Requirements for Histone Eviction from Two Nucleosomes at the Yeast PHO84 Promoter Are Determined by Intrinsic Nucleosome Stability [My Copy] Mol. Cell. Biol., Vol. 29, No. 11. (1 June 2009), pp. 2960-2981. by Christian J. Wippo, Bojana S. Krstulovic, Franziska Ertel, et al.Sanja Musladin, Dorothea Blaschke, Sabrina Sturzl, Guo-Cheng Yuan, Wolfram Horz, Philipp Korber, Slobodan Barbaric posted to nucleosomes pho pho84 transcription transcriptional by mmcclean on 2009-05-27 02:57:39 as
	Transcriptional profiling of native inner medullary collecting duct cells from rat kidney [My Copy] Physiol. Genomics, Vol. 32, No. 2. (17 January 2008), pp. 229-253. by Panapat Uawithya, Trairak Pisitkun, Brian E. Ruttenberg, Mark A. Knepper posted to cells collecting duct inner kidney medullary native profiling rat transcriptional vasopressin by dswan on 2009-05-21 11:23:25 as along with 2 people bertelsen guhjy
	Transcriptional regulation of the sil locus by the SilCR signalling peptide and its implications on group A streptococcus virulence [My Copy] Molecular Microbiology, Vol. 63, No. 4. (February 2007), pp. 1209-1222. by Eran, Yoni, Getter, et al. Yoav, Baruch, Moshe, Belotserkovsky, Ilia, Padalon, Gilly, Mishalian, Inbal, Podbielski, Andreas, Kreikemeyer, Bernd, Hanski, Emanuel posted to gas locus peptide peugenes regulation signalling sil silcr streptococcus transcriptional virulence by Winzer on 2009-05-05 10:41:05 as
	The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. [My Copy] Nucleic acids research, Vol. 28, No. 8. (15 April 2000), pp. 1838-1847. by E. Pérez-Rueda, J. Collado-Vides posted to coli dna-binding escherichia regulators repertoire transcriptional by Winzer on 2009-04-30 16:56:57 as along with 3 people and 1 group enelkinsan nickluscombe discreteonyxorb EBI-regulation
	Physical and functional interactions between Daxx and TSG101. [My Copy] Biochemical and biophysical research communications, Vol. 316, No. 3. (9 April 2004), pp. 827-833. by R. Muromoto, K. Sugiyama, T. Yamamoto, K. Oritani, K. Shimoda, T. Matsuda posted to daxx repression transcriptional tsg101 by agrawalt on 2009-04-21 15:48:12 as
	Improved green fluorescence. [My Copy] Nature, Vol. 373, No. 6516. (23 February 1995), pp. 663-664. by R. Heim, A. B. Cubitt, R. Y. Tsien posted to gfp methods transcriptional by mmcclean on 2009-04-17 17:12:23 as along with 1 person ts3435
	The Spt4p subunit of yeast DSIF stimulates association of the Paf1 complex with elongating RNA polymerase II. [My Copy] Molecular and cellular biology, Vol. 26, No. 8. (April 2006), pp. 3135-3148. by H. Qiu, C. Hu, C. M. Wong, A. G. Hinnebusch posted to chromatin hog transcriptional by mmcclean on 2009-04-16 04:53:10 as
	Genome-Scale Reconstruction of <italic>Escherichia coli</italic>'s Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000312. by Ines Thiele, Neema Jamshidi, Ronan M. Fleming, Bernhard Palsson posted to e-coli knowledgebase modeling regulation transcriptional translational by dolchan on 2009-03-13 19:33:31 as along with 3 people TRHvidsten pablocarb trfield
	Eukaryotic transcription factor binding sites--modeling and integrative search methods [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 24, No. 11. (1 June 2008), pp. 1325-1331. by Sridhar Hannenhalli posted to motif prediction promoter regulation transcriptional by cassj on 2009-02-15 22:17:01 as along with 15 people bsamal fenghezi isimpson wowalz druvus nklee oannes hplatero maximilianh heliopais bootsy Ema sameetmehta guhjy chad_davis
	MTAP: The Motif Tool Assessment Platform [My Copy] BMC Bioinformatics, Vol. 9, No. Suppl 9. (2008) by Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah, Dhundy Bastola, Hesham Ali posted to motif promoter regulation transcriptional by cassj on 2009-02-15 22:15:31 as along with 5 people wowalz nklee YuvalTabach Stew dquest
	W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 9. (1 May 2008), pp. 1121-1128. by Xin Chen, Lingqiong Guo, Zhaocheng Fan, Tao Jiang posted to chip motif promoter regulation transcriptional by cassj on 2009-02-15 22:13:57 as along with 4 people bsamal maximilianh idonaldson isimpson
	RNA-Seq: a revolutionary tool for transcriptomics [My Copy] Nature Reviews Genetics, Vol. 10, No. 1. (01 January 2009), pp. 57-63. by Zhong Wang, Mark Gerstein, Michael Snyder posted to histonemodification regulation review rnaseq tfbs transcriptional transcriptomics by cassj on 2009-02-15 22:05:34 as along with 43 people and 1 group bsamal zufar hongkeun_park ngehlenborg hzoltan sandfire maren jwfoley urgi RNA-protein cthachuk heliopais GustavoLacerda rdiaz TRHvidsten dswan roys woodson8 jonilaserson gdb n00c ThomasDOtto burak natstreet athma druvus tonamswish fishtank daed JohnBallam jmcq dandaman xingxu idonaldson raiyar inesdesantiago vplagnol jbhiatt giovanni orzenil nuin guhjy GeeSharpMinor CUBES
	ContDist: a tool for the analysis of quantitative gene and promoter properties [My Copy] BMC Bioinformatics, Vol. 10 (07 January 2009), 7. by Michael, Rune Matthiesen posted to anallysis chromatin histonemodification promoter regulation tfbs transcriptional by cassj on 2009-02-15 22:02:44 as along with 5 people thegoose idonaldson lptolik fhalbrit druvus
	A predictive model for identifying mini-regulatory modules in the mouse genome. [My Copy] Bioinformatics (Oxford, England) (3 December 2008) by Mahesh Yaragatti, Ted Sandler, Lyle Ungar posted to cis-regulatory modules promoter regulation transcriptional by cassj on 2009-02-15 22:00:42 as along with 6 people TRHvidsten djkt idonaldson druvus operon maximilianh
	Integrating sequence, evolution and functional genomics in regulatory genomics. [My Copy] Genome biology, Vol. 10, No. 1. (30 January 2009), 202. by Martin Vingron, Alvis Brazma, Richard Coulson, et al.Jacques van Helden, Thomas Manke, Kimmo Palin, Olivier Sand, Esko Ukkonen posted to bioinformatics integration regulation transcriptional by cassj on 2009-02-10 16:24:23 as along with 5 people reyez jfr pawelszczesny natstreet druvus
	Reliable transfer of transcriptional gene regulatory networks between taxonomically related organisms [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009) by Jan Baumbach, Sven Rahmann, Andreas Tauch posted to biology gene networls organisms regulatory related systems taxonomic transcriptional transfer by dswan on 2009-02-05 09:30:39 as along with 2 people TRHvidsten cmzmasek
	Control of stress-regulated gene expression and longevity by the Sch9 protein kinase. [My Copy] Cell cycle (Georgetown, Tex.), Vol. 6, No. 20. (15 October 2007), pp. 2445-2447. by A. Pascual-Ahuir, M. Proft posted to hog nutrientsensing transcriptional by mmcclean on 2009-01-21 18:08:42 as
	DNA Topology: Dynamic DNA Looping [My Copy] Current Biology, Vol. 16, No. 19. (10 October 2006), pp. R838-R840. by A. Travers posted to dna dynamic looping regulation topology transcriptional by dswan on 2009-01-20 15:06:46 as along with 1 person tonamswish
	Genetic regulators of large-scale transcriptional signatures in cancer. [My Copy] Nature genetics, Vol. 38, No. 4. (05 April 2006), pp. 421-430. by Adam S. Adler, Meihong Lin, Hugo Horlings, Dimitry S. Nuyten, Marc J. van de Vijver, Howard Y. Chang posted to cancer signature transcriptional by huiminC on 2008-11-07 21:48:26 as along with 7 people frohike rdiaz jfr tuck ccots Ao_Li2007 oelemento
	Integrative model of the response of yeast to osmotic shock [My Copy] Nature Biotechnology In Nat Biotech, Vol. 23, No. 8. (17 July 2005), pp. 975-982. by Edda Klipp, Bodil Nordlander, Roland Krüger, Peter Gennemark, Stefan Hohmann posted to hog modelling response transcriptional by mmcclean on 2008-10-22 17:53:58 as along with 5 people and 1 group dadiamah schwartzjmc jdoconnell sstoma arne dIEMoSIRIS
	Osmostress-induced transcription by Hot1 depends on a Hog1-mediated recruitment of the RNA Pol II. [My Copy] The EMBO journal, Vol. 22, No. 10. (15 May 2003), pp. 2433-2442. by P. M. Alepuz, E. de Nadal, M. Zapater, G. Ammerer, F. Posas posted to hog response transcriptional by mmcclean on 2008-10-18 23:17:40 as
	The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes. [My Copy] Nature, Vol. 427, No. 6972. (22 January 2004), pp. 370-374. by E. De Nadal, M. Zapater, P. M. Alepuz, L. Sumoy, G. Mas, F. Posas posted to hog response transcriptional by mmcclean on 2008-10-18 23:16:36 as
	The stress-activated Hog1 kinase is a selective transcriptional elongation factor for genes responding to osmotic stress. [My Copy] Molecular cell, Vol. 23, No. 2. (21 July 2006), pp. 241-250. by M. Proft, G. Mas, E. de Nadal, et al.A. Vendrell, N. Noriega, K. Struhl, F. Posas posted to hog response transcriptional by mmcclean on 2008-10-18 21:35:18 as
	Genome-wide location analysis of the stress-activated MAP kinase Hog1 in yeast. [My Copy] Methods (San Diego, Calif.), Vol. 40, No. 3. (November 2006), pp. 272-278. by A. Pascual-Ahuir, K. Struhl, M. Proft posted to hog response transcriptional by mmcclean on 2008-10-18 20:57:57 as
	Activated signal transduction kinases frequently occupy target genes. [My Copy] Science, Vol. 313, No. 5786. (28 July 2006), pp. 533-536. by D. K. Pokholok, J. Zeitlinger, N. M. Hannett, D. B. Reynolds, R. A. Young posted to hog response transcriptional by mmcclean on 2008-10-18 16:39:02 as along with 1 person and 1 group nickluscombe EBI-regulation
	The Sch9 kinase is a chromatin-associated transcriptional activator of osmostress-responsive genes [My Copy] The EMBO Journal, Vol. aop, No. current. (14 June 2007) by Amparo Pascual-Ahuir, Markus Proft posted to hog response transcriptional by mmcclean on 2008-10-17 22:54:39 as
	Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress. [My Copy] Mol Cell, Vol. 9, No. 6. (June 2002), pp. 1307-1317. by M. Proft, K. Struhl posted to hog response transcriptional by mmcclean on 2008-10-17 22:45:49 as along with 1 person hplatero
	Transcriptional responses to fatty acid are coordinated by combinatorial control [My Copy] Mol Syst Biol, Vol. 3 (5 June 2007) by Jennifer J. Smith, Stephen A. Ramsey, Marcello Marelli, et al.Bruz Marzolf, Daehee Hwang, Ramsey A. Saleem, Richard A. Rachubinski, John D. Aitchison posted to acid fatty nazanin network peroxisome transcriptional by ptrobajo on 2008-10-17 21:12:35 as along with 1 person roys
	Genomewide identification of Sko1 target promoters reveals a regulatory network that operates in response to osmotic stress in Saccharomyces cerevisiae. [My Copy] Eukaryot Cell, Vol. 4, No. 8. (August 2005), pp. 1343-1352. by M. Proft, F. D. Gibbons, M. Copeland, F. P. Roth, K. Struhl posted to hog response transcriptional by mmcclean on 2008-10-17 19:42:03 as
	Genetic reconstruction of a functional transcriptional regulatory network. [My Copy] Nat Genet (8 April 2007) by Zhanzhi Hu, Patrick J J. Killion, Vishwanath R R. Iyer posted to dragan factor knockout network regulatory transcription transcriptional yeast by ptrobajo on 2008-10-16 21:40:08 as along with 15 people and 6 groups sergiun TheresaNiederberger akraemer behindtherabbit dpollard xico nickluscombe zwang lizabeth dejori xingxu naegele czeller mapplab siebert Bioinformatics EisenLab WetBiology EBI-regulation ic4 generif_paper
	The Transcriptional Response of Saccharomyces cerevisiae to Osmotic Shock. Hot1p AND Msn2p/Msn4p ARE REQUIRED FOR THE INDUCTION OF SUBSETS OF HIGH OSMOLARITY GLYCEROL PATHWAY-DEPENDENT GENES [My Copy] J. Biol. Chem., Vol. 275, No. 12. (17 March 2000), pp. 8290-8300. by Martijn Rep, Marcus Krantz, Johan M. Thevelein, Stefan Hohmann posted to binders hog hot1 response transcriptional by mmcclean on 2008-10-15 17:57:49 as
	p73alpha isoforms drive opposite transcriptional and post-transcriptional regulation of MYCN expression in neuroblastoma cells [My Copy] Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4222-4232. by Emilie Horvilleur, Matthieu Bauer, David Goldschneider, et al.Xenia Mergui, de La, Jean Benard, Setha Douc-Rasy, David Cappellen posted to mycn neuroblastoma p73 post-transcriptional regulation tp73 transcriptional by fpattyn to the group Neuroblastoma on 2008-07-23 16:15:40 as
	AMPK and transcriptional regulation. [My Copy] Front Biosci, Vol. 13 (2008), pp. 3022-3033. by S. L. McGee, M. Hargreaves posted to ampk and regulation transcriptional by maimoni on 2008-05-17 16:19:43 as along with 3 people zhlei arne balicea
	Myc-Mediated Transcriptional Repression by Recruitment of Histone Deacetylase [My Copy] Cancer Res, Vol. 68, No. 10. (15 May 2008), pp. 3624-3629. by John F. Kurland, William P. Tansey posted to deacetylase genes histone myc repression target transcription transcriptional by fpattyn on 2008-05-15 22:10:19 as
	Network motifs in the transcriptional regulation network of Escherichia coli. [My Copy] Nature genetics, Vol. 31, No. 1. (22 May 2002), pp. 64-68. by Shai S. Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon posted to e-coli motifs networks transcriptional by blobbybirdman on 2008-02-27 20:47:51 as along with 19 people and 1 group antonkratz vtraag sergiun mtagaya kaarsinogen cswinburne jstajic jjray ssb nickluscombe gurkanbebek jtaylor jayster4 karfunkel zibuyu maralena hannahrajasingh Borelli ethkim EBI-regulation
	An RNA-binding Domain in the Thyroid Hormone Receptor Enhances Transcriptional Activation [My Copy] J. Biol. Chem., Vol. 279, No. 32. (6 August 2004), pp. 33051-33056. by Bin Xu, Ronald J. Koenig posted to activation hormone nuclear receptor receptors rna thr thyroid transcription transcriptional by vidhya on 2008-01-22 10:21:42 as

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