Tag transmembrane [131 articles] Export

Recent papers classified by the tag transmembrane.

	Adenosine receptors: therapeutic aspects for inflammatory and immune diseases. [My Copy] Nature reviews. Drug discovery, Vol. 7, No. 9. (September 2008), pp. 759-770. by György Haskó, Joel Linden, Bruce Cronstein, Pál Pacher posted to transmembrane signaling by choonpeng on 2009-11-16 00:56:07 as along with 1 person guhjy
	The Membrane Topography of the Diphtheria Toxin T Domain Linked to the A Chain Reveals a Transient Transmembrane Hairpin and Potential Translocation Mechanisms [My Copy] Biochemistry, Vol. 0, No. 0. (0000) by Jie Wang, Erwin London posted to wang09pdf transmembrane translocation transien toxin topology membrane mechanism diptheria by paulschlesinger on 2009-10-09 00:30:59 as
	Cystic Fibrosis Transmembrane Conductance Regulator: Using Differential Reactivity toward Channel-Permeant and Channel-Impermeant Thiol-Reactive Probes To Test a Molecular Model for the Pore [My Copy] Biochemistry, Vol. 0, No. 0. (0000) by Christopher Alexander, Anthony Ivetac, Xuehong Liu, et al.Yohei Norimatsu, Jose R. Serrano, Allison Landstrom, Mark Sansom, David C. Dawson posted to transmembrane regulator fibrosis cystic conductance chloride channel cftr alexan09pdf by paulschlesinger on 2009-09-30 01:42:19 as
	Molecular characterization of a common binding site for small molecules within the transmembrane domain of G-protein coupled receptors [My Copy] Journal of Pharmacological and Toxicological Methods, Vol. 33, No. 4. (August 1995), pp. 179-185. by Margaret A. Cascieri, Tung M. Fong, Catherine D. Strader posted to transmembrane site gpcr domain binding by LaetitiaBigot on 2009-08-26 14:34:38 as
	Aqueous Accessibility to the Transmembrane Regions of Subunit c of the Escherichia coli F1F0 ATP Synthase [My Copy] J. Biol. Chem., Vol. 284, No. 35. (28 August 2009), pp. 23243-23250. by P. Ryan Steed, Robert H. Fillingame posted to transmembrane syntase steed09pdf regions atp accessibility by paulschlesinger on 2009-08-22 00:17:23 as
	Prion Protein-Detergent Micelle Interactions Studied by NMR in Solution [My Copy] J. Biol. Chem., Vol. 284, No. 34. (21 August 2009), pp. 22713-22721. by Simone Hornemann, Christine von Schroetter, Fred F. Damberger, Kurt Wuthrich posted to transmembrane protein prion nmr model micelle interactions hornm09pdf detergent by paulschlesinger on 2009-08-18 01:34:29 as along with 1 person scampos
	Conformational studies of peptides representing a segment of TM7 from H+-VO-ATPase in SDS micelles [My Copy] European Biophysics Journal by Afonso Duarte, Edwin de Jong, Rob Koehorst, Marcus Hemminga posted to transmembrane studies sds peptides micelles h-atpase duart09pdf conformational by paulschlesinger on 2009-08-17 01:37:46 as
	Actin restricts Fc[epsiv]RI diffusion and facilitates antigen-induced receptor immobilization [My Copy] Nat Cell Biol, Vol. 10, No. 8. (20 August 2008), pp. 955-963. by Nicholas L. Andrews, Keith A. Lidke, Janet R. Pfeiffer, et al.Alan R. Burns, Bridget S. Wilson, Janet M. Oliver, Diane S. Lidke posted to transmembrane diffusion cytoskeletal-dynamics by choonpeng on 2009-08-13 05:34:00 as
	Dynamics of putative raft-associated proteins at the cell surface [My Copy] J. Cell Biol., Vol. 165, No. 5. (7 June 2004), pp. 735-746. by Anne K. Kenworthy, Benjamin J. Nichols, Catha L. Remmert, et al.Glenn M. Hendrix, Mukesh Kumar, Joshua Zimmerberg, Jennifer Lippincott-Schwartz posted to transmembrane diffusion by choonpeng on 2009-08-13 03:39:35 as
	Role of Hydrogen Bonding and Helix−Lipid Interactions in Transmembrane Helix Association [My Copy] Journal of the American Chemical Society, Vol. 130, No. 20. (1 May 2008), pp. 6456-6462. by Jinhyuk Lee, Wonpil Im posted to methodology transmembrane by choonpeng on 2009-08-03 09:09:19 as along with 1 person and 1 group sobolevnrm baker-group
	Experimental and computational evaluation of forces directing the association of transmembrane helices. [My Copy] Journal of the American Chemical Society, Vol. 131, No. 32. (19 August 2009), pp. 11341-11343. by Yao Zhang, Daniel W. Kulp, James D. Lear, William F. DeGrado posted to coiled-coil computational deltag model peptide transmembrane by dr_proton on 2009-07-27 13:09:16 as along with 2 people jjurban acpan
	Solvent-Free Lipid Bilayer Model Using Multiscale Coarse-Graining [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 13. (2 April 2009), pp. 4443-4455. by Sergei Izvekov, Gregory A. Voth posted to coarse-grained methodology transmembrane by choonpeng on 2009-07-27 11:43:15 as along with 3 people and 1 group flbarroso agrossfield sobolevnrm baker-group
	Quantitative microscopy: protein dynamics and membrane organisation. [My Copy] Traffic (Copenhagen, Denmark), Vol. 10, No. 8. (August 2009), pp. 962-971. by D. M. Owen, D. Williamson, C. Rentero, K. Gaus posted to diffusion transmembrane by choonpeng on 2009-07-24 09:20:27 as
	Predicting transmembrane protein topology with a hidden markov model: application to complete genomes1 [My Copy] Journal of Molecular Biology, Vol. 305, No. 3. (19 January 2001), pp. 567-580. by Anders Krogh, Björn Larsson, Gunnar von Heijne, Erik L. L. Sonnhammer posted to das prediction structure-prediction transmembrane by niallhaslam on 2009-07-13 16:05:41 as along with 11 people azazello tfuji katholt thaliana bjorns andreasauerwein j3xucite happy_manatee massivemayhem twenta sebk
	PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by M. Amico, M. Finelli, I. Rossi, et al.A. Zauli, A. Elofsson, H. Viklund, G. von Heijne, D. Jones, A. Krogh, P. Fariselli, P. Luigi Martelli, R. Casadio posted to das modular-architecture structure structure-prediction transmembrane webservices by niallhaslam on 2009-07-13 16:02:59 as along with 1 person xingxu
	Transmembrane protein topology prediction using support vector machines [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 159. by Timothy Nugent, David Jones posted to prediction protein svm transmembrane by chocolate2009 on 2009-06-10 21:17:19 as along with 3 people sebk TRHvidsten erexhepa
	Inter-helical Interactions in Membrane Proteins: Analysis Based on the Local Backbone Geometry and the Side Chain Interactions. [My Copy] Journal of biomolecular structure & dynamics, Vol. 26, No. 6. (June 2009), pp. 719-730. by A. N. Jha, S. Vishveshwara posted to dimer helix membrane_proteins structure theory transmembrane by xdeupi on 2009-05-06 09:54:37 as
	Wide turn diversity in protein transmembrane helices implications for G-protein-coupled receptor and other polytopic membrane protein structure and function. [My Copy] Molecular pharmacology, Vol. 73, No. 4. (April 2008), pp. 1092-1104. by R. Peter Riek, Angela A. Finch, Gillian E. Begg, Robert M. Graham posted to flexibility helix membrane_proteins modeling pro-kink ser structure theory thr transmembrane by xdeupi on 2009-04-17 11:47:42 as
	Using protein structural information in evolutionary inference: transmembrane proteins [My Copy] Mol Biol Evol, Vol. 16, No. 12. (1 December 1999), pp. 1696-1710. by P. Lio, N. Goldman posted to gpcr protein structural transmembrane by yuslinaz on 2009-04-17 03:03:31 as
	A periodicity analysis of transmembrane helices [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2604-2610. by Hadas Leonov, Isaiah T. Arkin posted to analysis computational helix transmembrane by neils on 2009-04-13 09:36:40 as
	Bacteriorhodopsin Folds into the Membrane against an External Force. [My Copy] J Mol Biol (6 January 2006) by Max Kessler, Kay E E. Gottschalk, Harald Janovjak, Daniel J J. Muller, Hermann E E. Gaub posted to mechanical-unfolding transmembrane by choonpeng on 2009-04-02 06:44:23 as along with 1 person and 1 group xdeupi LabCompMed
	Wide Nanoscopic Pore of Maxi-Anion Channel Suits its Function as an ATP-Conductive Pathway [My Copy] Vol. 87, No. 3. (1 September 2004), pp. 1672-1685. by Ravshan Z. Sabirov, Yasunobu Okada posted to transmembrane by choonpeng on 2009-03-27 06:30:09 as
	Chloride channels in normal and cystic fibrosis human erythrocyte membrane. [My Copy] Blood cells, molecules & diseases, Vol. 39, No. 1. (g 2007), pp. 24-34. by G. Decherf, G. Bouyer, S. Egée, S. L. Thomas posted to transmembrane by choonpeng on 2009-03-25 03:56:30 as
	Deformation-induced ATP release from red blood cells requires CFTR activity [My Copy] Am J Physiol Heart Circ Physiol, Vol. 275, No. 5. (1 November 1998), pp. H1726-1732. by Randy S. Sprague, Mary L. Ellsworth, Alan H. Stephenson, Mary E. Kleinhenz, Andrew J. Lonigro posted to transmembrane by choonpeng on 2009-03-25 03:42:13 as along with 1 person brianstorey
	Utility of Surface Supported Bilayers in Studies of Transmembrane Helix Dimerization [My Copy] Journal of Structural Biology (20 March 2009) by Edwin Li, Mikhail Merzlyakov, Janice Lin, Peter Searson, Kalina Hristova posted to bilyer dimerization helix li09pdf supported transmembrane by paulschlesinger on 2009-03-23 01:55:21 as
	Computational Design of Peptides That Target Transmembrane Helices [My Copy] Science, Vol. 315, No. 5820. (30 March 2007), pp. 1817-1822. by Hang Yin, Joanna S. Slusky, Bryan W. Berger, et al.Robin S. Walters, Gaston Vilaire, Rustem I. Litvinov, James D. Lear, Gregory A. Caputo, Joel S. Bennett, William F. Degrado posted to computationsl design helices peptides transmembrane yin07pdf by paulschlesinger on 2009-03-11 23:00:23 as along with 7 people jjurban hc5428 chad_davis zwang xxh0541 Evangelia chgjb
	Influence of the environment in the conformation of alpha-helices studied by protein database search and molecular dynamics simulations. [My Copy] Biophysical journal, Vol. 82, No. 6. (June 2002), pp. 3207-3213. by M. Olivella, X. Deupi, C. Govaerts, L. Pardo posted to transmembrane by choonpeng on 2009-03-10 10:14:12 as along with 2 people and 1 group carlosjavierna xdeupi LabCompMed
	Prediction of membrane protein structures with complex topologies using limited constraints [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1409-1414. by P. Barth, B. Wallner, D. Baker posted to rosetta transmembrane by dgront on 2009-03-06 06:15:19 as along with 10 people and 2 groups rph sebk barry krapnik viktor21614 paulschlesinger zwang apaydin agrossfield amishp OPIG structural_bioinformatics
	Putative Re-entrant Loop 1 of AE2 Transmembrane Domain Has a Major Role in Acute Regulation of Anion Exchange by pH [My Copy] J. Biol. Chem., Vol. 284, No. 10. (6 March 2009), pp. 6126-6139. by Andrew K. Stewart, Christine E. Kurschat, Richard D. Vaughan-Jones, Seth L. Alper posted to ae2 anion domain exchange regulation stewa09pdf transmembrane by paulschlesinger on 2009-02-28 00:33:08 as
	Preparation and Properties of Asymmetric Vesicles That Mimic Cell Membranes: EFFECT UPON LIPID RAFT FORMATION AND TRANSMEMBRANE HELIX ORIENTATION [My Copy] J. Biol. Chem., Vol. 284, No. 10. (6 March 2009), pp. 6079-6092. by Hui-Ting Cheng, Megha, Erwin London posted to asymmetric cheng09apdf helix liposome orientation transmembrane by paulschlesinger on 2009-02-28 00:26:24 as along with 2 people WFPaxton faion
	Basic charge clusters and predictions of membrane protein topology. [My Copy] Journal of chemical information and computer sciences, Vol. 42, No. 3. (n 2002), pp. 620-632. by D. Juretić, L. Zoranić, D. Zucić posted to das split structure-prediction transmembrane by niallhaslam on 2009-02-12 11:06:17 as
	Investigation of temperature-induced phase transitions in DOPC and DPPC phospholipid bilayers using temperature-controlled scanning force microscopy. [My Copy] Biophysical journal, Vol. 86, No. 6. (June 2004), pp. 3783-3793. by Z. V. Leonenko, E. Finot, H. Ma, T. E. Dahms, D. T. Cramb posted to transmembrane by choonpeng on 2009-01-14 05:23:31 as
	The selectivity of K+ ion channels: Testing the hypotheses [My Copy] Biophys. J. (12 September 2008), biophysj.108.132035. by Philip W. Fowler, Kaihsu Tai, Mark S. Sansom posted to transmembrane by choonpeng on 2009-01-14 02:18:45 as along with 2 people agrossfield paulschlesinger
	Self-association of Transmembrane alpha-Helices in Model Membranes: IMPORTANCE OF HELIX ORIENTATION AND ROLE OF HYDROPHOBIC MISMATCH. [My Copy] J Biol Chem, Vol. 280, No. 47. (25 November 2005), pp. 39324-39331. by Emma Sparr, Walter L L. Ash, Petr V V. Nazarov, et al.Dirk T S T. Rijkers, Marcus A A. Hemminga, D Peter P. Tieleman, J Antoinette A. Killian posted to transmembrane by choonpeng on 2009-01-02 10:28:35 as along with 1 person and 1 group xdeupi LabCompMed
	Direct simulation of transmembrane helix association: role of asparagines. [My Copy] Biophysical journal, Vol. 87, No. 3. (September 2004), pp. 1650-1656. by T. Stockner, W. L. Ash, J. L. MacCallum, D. P. Tieleman posted to transmembrane by choonpeng on 2009-01-02 10:13:03 as
	Protein area occupancy at the center of the red blood cell membrane [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 8. (26 February 2008), pp. 2848-2852. by Allison D. Dupuy, Donald M. Engelman posted to transmembrane by choonpeng on 2009-01-02 09:58:25 as along with 1 person and 1 group sobolevnrm baker-group
	Molecular dynamics studies on structure and dynamics of phospholamban monomer and pentamer in membranes. [My Copy] Proteins (6 November 2008) by Taehoon Kim, Jinhyuk Lee, Wonpil Im posted to transmembrane by choonpeng on 2008-12-29 08:46:37 as
	Cluster formation of transmembrane proteins due to hydrophobic mismatching. [My Copy] Physical review letters, Vol. 101, No. 12. (19 September 2008) by U. Schmidt, G. Guigas, M. Weiss posted to coarse-grained transmembrane by choonpeng on 2008-12-29 08:44:28 as
	Identification of an Arabidopsis transmembrane bZIP transcription factor involved in the endoplasmic reticulum stress response [My Copy] Biochemical and Biophysical Research Communications, Vol. 374, No. 2. (19 September 2008), pp. 242-247. by H. Tajima, Y. Iwata, M. Iwano, S. Takayama, N. Koizumi posted to arabidopsis bzip leucine_zipper transcription_factor transmembrane by yarikson on 2008-12-19 16:21:47 as
	The Influence of Amino Acid Protonation States on Molecular Dynamics Simulations of the Bacterial Porin OmpF [My Copy] Biophys. J., Vol. 90, No. 1. (1 January 2006), pp. 112-123. by Sameer Varma, See-Wing Chiu, Eric Jakobsson posted to transmembrane by choonpeng on 2008-12-19 00:18:01 as
	Molecular Dynamics study of MscL interactions with a curved lipid bilayer. [My Copy] Biophys J (2 June 2006) by Grischa R R. Meyer, Justin Gullingsrud, Klaus Schulten, Boris Martinac posted to mechanotransduction transmembrane by choonpeng on 2008-12-18 10:34:12 as along with 1 person dimka
	Molecular simulations of lipid mediated protein-protein interactions [My Copy] Biophys. J. (16 May 2008), biophysj.107.124164. by Frederick J. de Meyer, Maddalena Venturoli, Berend Smit posted to coarse-grained protein-interaction transmembrane by choonpeng on 2008-12-18 05:31:57 as along with 3 people and 1 group oteri paulschlesinger agrossfield Structural Biology Group TorVergata
	Characterization of the outer membrane protein OprF of Pseudomonas aeruginosa in a lipopolysaccharide membrane by computer simulation. [My Copy] Proteins (24 July 2008) by T P P. Straatsma, T A A. Soares posted to transmembrane by choonpeng on 2008-12-11 01:49:43 as along with 1 person abebe
	Calculating the free energy of association of transmembrane helices. [My Copy] Biophysical journal, Vol. 91, No. 5. (1 September 2006), pp. 1710-1723. by J. Zhang, T. Lazaridis posted to free-energy helices theory transmembrane by chiufanlee on 2008-12-08 11:28:06 as
	Mechanosensitive Membrane Channels in Action [My Copy] Biophys. J., Vol. 94, No. 8. (15 April 2008), pp. 2994-3002. by Serge Yefimov, Erik van der Giessen, Patrick R. Onck, Siewert J. Marrink posted to mechanotransduction transmembrane by choonpeng on 2008-12-05 05:52:58 as along with 1 person sunnytov
	Setting up and running molecular dynamics simulations of membrane proteins. [My Copy] Methods (San Diego, Calif.), Vol. 41, No. 4. (April 2007), pp. 475-488. by Christian Kandt, Walter L. Ash, D. Peter Tieleman posted to methodology transmembrane by choonpeng on 2008-12-04 02:27:31 as along with 3 people and 2 groups arnaucordomi xdeupi sobolevnrm LabCompMed baker-group
	Molecular dynamics simulations and membrane protein structure quality [My Copy] European Biophysics Journal, Vol. 37 (2008), pp. 403-409. by Anthony Ivetac, Mark Sansom posted to structure-validation transmembrane by choonpeng on 2008-12-02 04:48:56 as along with 1 person dimka
	Helix-Helix Interactions in Membrane Proteins: Coarse-Grained Simulations of Glycophorin A Helix Dimerization [My Copy] Biochemistry, Vol. 47, No. 40. (7 October 2008), pp. 10503-10512. by Emi Psachoulia, Philip W. Fowler, Peter J. Bond, Mark S. Sansom posted to coarse-grained transmembrane by choonpeng on 2008-11-26 02:42:51 as along with 3 people jonathancooper agrossfield paulschlesinger
	Structure of transmembrane pore induced by Bax-derived peptide: Evidence for lipidic pores. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (5 November 2008) by Shuo Qian, Wangchen Wang, Lin Yang, Huey W W. Huang posted to area bax membrane peptide pore qian08pdf transmembrane volume by paulschlesinger on 2008-11-07 20:11:42 as
	Investigation of transmembrane proteins using a computational approach. [My Copy] BMC genomics, Vol. 9 Suppl 1 (2008) by J. Y. Yang, M. Q. Yang, A. K. Dunker, Y. Deng, X. Huang posted to disorder gpcr loops membrane_proteins structure theory transmembrane by xdeupi on 2008-10-20 22:23:57 as

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helix	62
structure	46
membrane	29
membrane_proteins	28
review	22
modeling	19
mutation	18
dynamics	16
sequence	16
activation	15
gpcr	15
folding	13
gly	10
md	10
pro-kink	10
ser	9
channel	8
tshr	8
bioinformatics	7
loops	7
mechanism	7
protein	7
dimer	6
hbond	6
theory	6
tm7	6
tmd	6
binding	5
domain	5
lipids	5
coarse-grained	4
electrophysiology	4
flexibility	4
heart	4
integrin	4
myocardium	4
potential	4
prediction	4
rhodopsin	4
signaling	4
abcb1	3
das	3
diffusion	3
evolution	3
lhr	3
ligands	3
mdr1	3
methodology	3
mutants	3
peptide	3
receptor	3
rlip76	3
structure-prediction	3
thr	3
action_potential	2
agonist	2
alpha-helix	2
ap	2
atrioventricular	2
av	2
b2ar	2
beat	2
ccr5	2
cell	2
computational	2
conduction	2
confanal	2
crystallography	2
design	2
dielectric	2
disease	2
domains	2
ecl2	2
exoloop	2
field	2
genome	2
gproteins	2
helices	2
hmm	2
interaction	2
interactions	2
lmc_101	2
mechanotransduction	2
microbiology	2
model	2
nodal	2
node	2
pdb	2
peptides	2
pgp	2
premature	2
ser281	2
shock	2
switch	2
tm2	2
tmhmm	2
toggle	2
transporter	2
trp	2
txp	2

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