Register | Log in | FAQ      [?] 

Tag transmembrane [84 articles]

Recent papers classified by the tag transmembrane.
  • Computational Design of Peptides That Target Transmembrane Helices
    Science, Vol. 315, No. 5820. (30 March 2007), pp. 1817-1822.
    by Hang Yin, Joanna S Slusky, Bryan W Berger, Robin S Walters, Gaston Vilaire, Rustem I Litvinov, James D Lear, Gregory A Caputo, Joel S Bennett, William F Degrado
    posted to design peptide transmembrane by zwang on 2007-03-31 04:43:12 as ** along with 5 people hc5428 chad_davis xxh0541 Evangelia chgjb
  • Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method.
    Protein Eng, Vol. 10, No. 6. (June 1997), pp. 673-676.
    by M Cserzö, E Wallin, I Simon, G von Heijne, A Elofsson
    posted to bioinformatics microbiology transmembrane by xingxu on 2008-03-07 06:09:22 as **
  • Evaluation of methods for the prediction of membrane spanning regions.
    Bioinformatics, Vol. 17, No. 7. (July 2001), pp. 646-653.
    by S Möller, MD Croning, R Apweiler
    posted to bioinformatics review transmembrane by xingxu on 2008-03-07 16:24:01 as ** along with 3 people sebk happy_manatee cjeans
  • Improving the accuracy of transmembrane protein topology prediction using evolutionary information
    Bioinformatics, Vol. 23, No. 5. (March 2007), pp. 538-544.
    by Jones, T David
    posted to bioinformatics evolution transmembrane by xingxu on 2008-03-07 18:10:05 as ** along with 2 people lenov dandaman
  • Epitope Tag Mapping of the Extracellular and Cytoplasmic Domains of the Rat Parathyroid Hormone (PTH)/PTH-Related Peptide Receptor
    Endocrinology, Vol. 139, No. 11. (1 November 1998), pp. 4563-4567.
    by Lin Y Xie, Abdul B Abou-Samra
    posted to methods transmembrane by xingxu on 2008-03-31 10:55:06 as **
  • A model recognition approach to the prediction of all-helical membrane protein structure and topology.
    Biochemistry, Vol. 33, No. 10. (15 March 1994), pp. 3038-3049.
    by DT Jones, WR Taylor, JM Thornton
    posted to bioinformatics transmembrane by xingxu on 2008-03-18 16:26:31 as **
  • PONGO: a web server for multiple predictions of all-alpha transmembrane proteins.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by M Amico, M Finelli, I Rossi, A Zauli, A Elofsson, H Viklund, G von Heijne, D Jones, A Krogh, P Fariselli, P Luigi Martelli, R Casadio
    posted to bioinformatics repository transmembrane by xingxu on 2008-03-07 18:08:42 as **
  • A hidden Markov model for predicting transmembrane helices in protein sequences.
    Proc Int Conf Intell Syst Mol Biol, Vol. 6 (1998), pp. 175-182.
    by EL Sonnhammer, G von Heijne, A Krogh
    posted to bioinformatics hmm transmembrane by xingxu on 2008-03-07 17:45:56 as ** along with 2 people sebk netterpaladin
  • Membrane Topology and Insertion of Membrane Proteins: Search for Topogenic Signals
    Microbiol. Mol. Biol. Rev., Vol. 64, No. 1. (1 March 2000), pp. 13-33.
    by Marleen van Geest, Juke S Lolkema
    posted to review transmembrane by xingxu on 2008-03-07 17:04:45 as **
  • A combined transmembrane topology and signal peptide prediction method.
    J Mol Biol, Vol. 338, No. 5. (14 May 2004), pp. 1027-1036.
    by L Käll, A Krogh, EL Sonnhammer
    posted to bioinformatics transmembrane by xingxu on 2008-03-07 16:54:08 as ** along with 1 person cjeans
  • Modulated receptor interactions in bacterial transmembrane signaling
    Trends in Cell Biology, Vol. 14, No. 9. (September 2004), pp. 478-482.
    by Daniel J Webre, Peter M Wolanin, Jeffry B Stock
    posted to interactions microbiology receptor review signaling transmembrane by xingxu on 2008-02-21 22:58:45 as ** along with 1 person Pao-Yang
  • The role of extra-membranous inter-helical loops in helix-helix interactions.
    Protein Eng Des Sel, Vol. 18, No. 12. (December 2005), pp. 563-570.
    by MB Ulmschneider, DP Tieleman, MS Sansom
    posted to dynamics helix loops md membrane transmembrane by xdeupi on 2006-03-06 09:46:32 as read along with 2 people and 1 group thaliana allanlo LabCompMed
  • Self-association of Transmembrane alpha-Helices in Model Membranes: IMPORTANCE OF HELIX ORIENTATION AND ROLE OF HYDROPHOBIC MISMATCH.
    J Biol Chem, Vol. 280, No. 47. (25 November 2005), pp. 39324-39331.
    by Emma Sparr, Walter L L Ash, Petr V V Nazarov, Dirk T S T Rijkers, Marcus A A Hemminga, D Peter P Tieleman, J Antoinette A Killian
    posted to helix transmembrane by xdeupi on 2005-11-22 19:50:55 as *** along with 1 group LabCompMed
  • Folding of helical membrane proteins: the role of polar, GxxxG-like and proline motifs.
    Curr Opin Struct Biol, Vol. 14, No. 4. (August 2004), pp. 465-479.
    by A Senes, DE Engel, WF DeGrado
    posted to folding gly membrane pro-kink sequence ser structure transmembrane by xdeupi on 2006-05-22 10:55:10 as **** along with 1 person and 1 group thaliana LabCompMed
  • The Calpha ---H...O hydrogen bond: a determinant of stability and specificity in transmembrane helix interactions.
    Proc Natl Acad Sci U S A, Vol. 98, No. 16. (31 July 2001), pp. 9056-9061.
    by A Senes, I Ubarretxena-Belandia, DM Engelman
    posted to folding gly hbond membrane transmembrane by xdeupi on 2006-05-22 10:17:00 as ** along with 1 person and 1 group thaliana LabCompMed
  • Molecular Dynamics Simulations of GlpF in a Micelle vs in a Bilayer: Conformational Dynamics of a Membrane Protein as a Function of Environment.
    J Phys Chem B Condens Matter Mater Surf Interfaces Biophys, Vol. 109, No. 1. (13 January 2005), pp. 575-582.
    by G Patargias, PJ Bond, SS Deol, MS Sansom
    posted to crystallography dynamics membrane structure transmembrane by xdeupi on 2006-07-24 10:25:16 as ** along with 1 person and 1 group paulschlesinger LabCompMed
  • The TXP motif in the second transmembrane helix of CCR5. A structural determinant of chemokine-induced activation.
    J Biol Chem, Vol. 276, No. 16. (20 April 2001), pp. 13217-13225.
    by C Govaerts, C Blanpain, X Deupi, S Ballet, JA Ballesteros, SJ Wodak, G Vassart, L Pardo, M Parmentier
    posted to ccr5 helix tm2 transmembrane txp by xdeupi on 2005-10-25 03:18:46 as ** along with 1 person and 1 group tkershaw LabCompMed
  • Mutational and bioinformatics analysis of proline- and glycine-rich motifs in vesicular acetylcholine transporter
    Journal of Neurochemistry, Vol. 98, No. 5. (September 2006), pp. 1551-1559.
    by Chandrasekaran, Ananda, Ojeda, M Ana, Kolmakova, G Natalia, Parsons, M Stanley
    posted to activation channel gly helix mutation pro-kink structure transmembrane by xdeupi on 2006-09-05 11:43:55 as ** along with 1 group LabCompMed
  • How protein transmembrane segments sense the lipid environment.
    Biochemistry, Vol. 46, No. 6. (13 February 2007), pp. 1457-1465.
    by TK Nyholm, S Ozdirekcan, JA Killian
    posted to helix lipids membrane_proteins transmembrane by xdeupi on 2007-02-13 14:59:06 as ** along with 3 people and 1 group andreasauerwein netterpaladin sebk LabCompMed
  • Uniformity, ideality, and hydrogen bonds in transmembrane alpha-helices.
    Biophysical journal, Vol. 83, No. 4. (October 2002), pp. 2084-2095.
    by S Kim, TA Cross
    posted to flexibility hbond helix retinal_binding_proteins structure transmembrane by xdeupi on 2008-05-13 16:00:40 as **
  • Formation of Transmembrane Helices In Vivo--Is Hydrophobicity All that Matters?
    J Cell Biol, Vol. 177, No. 4. (21 May 2007)
    by G von Heijne
    posted to helix membrane_proteins transmembrane by xdeupi on 2007-05-28 08:52:53 as ** along with 1 group LabCompMed
  • Dynamic helix interactions in transmembrane signaling.
    Cell, Vol. 127, No. 3. (3 November 2006), pp. 447-450.
    by EE Matthews, M Zoonens, DM Engelman
    posted to activation dynamics helix review transmembrane by xdeupi on 2006-11-14 16:44:32 as ***** along with 2 people and 1 group gcaltabiano ndoelker LabCompMed
  • Progress in structure prediction of alpha-helical membrane proteins.
    Curr Opin Struct Biol (3 July 2006)
    by Sarel J J Fleishman, Nir Ben-Tal
    posted to helix membrane_proteins review structure transmembrane by xdeupi on 2007-02-13 15:11:51 as ***** along with 1 person and 1 group wouterboomsma LabCompMed
  • Membrane-protein topology
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 12., pp. 909-918.
    by Gunnar von Heijne
    posted to transmembrane structure review membrane_proteins lmc_101 genome by xdeupi on 2006-12-11 10:31:16 as ** along with 3 people and 3 groups dchughes nm merj G4ID LabCompMed Genetics-of-Gambling
  • Conformational dynamics of M2 helices in KirBac channels: helix flexibility in relation to gating via molecular dynamics simulations.
    Biochemistry, Vol. 44, No. 44. (8 November 2005), pp. 14586-14594.
    by A Grottesi, C Domene, B Hall, MS Sansom
    posted to activation channel dynamics md membrane modeling transmembrane by xdeupi on 2006-02-20 09:24:41 as read along with 1 person and 1 group dimka LabCompMed
  • The binding site of aminergic G protein-coupled receptors: the transmembrane segments and second extracellular loop.
    Annu Rev Pharmacol Toxicol, Vol. 42 (2002), pp. 437-467.
    by L Shi, JA Javitch
    posted to agonist binding ecl2 gpcr helix loops transmembrane by xdeupi on 2005-11-01 01:00:19 as ** along with 1 person and 1 group IrinaMoreira LabCompMed
  • From Interactions of Single Transmembrane Helices to Folding of alpha-Helical Membrane Proteins: Analyzing Transmembrane Helix-Helix Interactions in Bacteria.
    Curr Protein Pept Sci, Vol. 8, No. 1. (February 20067), pp. 45-61.
    by Dirk Schneider, Carmen Finger, Alexander Prodöhl, Thomas Volkmer
    posted to helix membrane_proteins review sequence structure transmembrane by xdeupi on 2007-02-26 09:06:23 as ** along with 1 group LabCompMed
  • Folding Amphipathic Helices Into Membranes: Amphiphilicity Trumps Hydrophobicity.
    J Mol Biol (22 May 2007)
    by Mónica Fernández-Vidal, Sajith Jayasinghe, Alexey S S Ladokhin, Stephen H H White
    posted to folding helix membrane_proteins transmembrane by xdeupi on 2007-06-02 19:22:34 as ** along with 1 group LabCompMed
  • A two-entropies analysis to identify functional positions in the transmembrane region of class A G protein-coupled receptors.
    Proteins, Vol. 63, No. 4. (1 June 2006), pp. 1018-1030.
    by K Ye, EW Lameijer, MW Beukers, AP Ijzerman
    posted to activation gpcr sequence transmembrane by xdeupi on 2006-07-24 10:21:33 as **** along with 2 people and 1 group cen4ik cat_worth LabCompMed
  • Setting up and running molecular dynamics simulations of membrane proteins.
    Methods, Vol. 41, No. 4. (April 2007), pp. 475-488.
    by C Kandt, WL Ash, D Peter Tieleman
    posted to dynamics md membrane modeling review transmembrane by xdeupi on 2007-03-26 10:15:17 as ***** along with 1 person and 2 groups sobolevnrm LabCompMed baker-group
  • Molecular dynamics simulations of large integral membrane proteins with an implicit membrane model.
    J Phys Chem B Condens Matter Mater Surf Interfaces Biophys, Vol. 110, No. 1. (12 January 2006), pp. 548-556.
    by S Tanizaki, M Feig
    posted to dynamics membrane modeling transmembrane by xdeupi on 2006-02-20 09:15:18 as ** along with 2 people and 1 group onufriev dimka LabCompMed
  • Evaluating Tilt Angles of Membrane-Associated Helices: Comparison of Computational and NMR Techniques
    Biophys. J., Vol. 90, No. 5. (1 March 2006), pp. 1650-1660.
    by Martin B Ulmschneider, Mark S Sansom, Alfredo Di Nola
    posted to helix membrane modeling structure transmembrane by xdeupi on 2006-02-10 09:49:58 as ***** along with 2 people and 1 group thaliana loison LabCompMed
  • Discontinuous membrane helices in transport proteins and their correlation with function.
    J Struct Biol (1 February 2007)
    by Emanuela Screpanti, Carola Hunte
    posted to channel membrane_proteins structure transmembrane by xdeupi on 2007-03-21 11:35:11 as ** along with 1 person and 1 group Guff32 LabCompMed
  • Stable Interactions Between the Transmembrane Domains of the Adenosine A2A Receptor.
    Protein science : a publication of the Protein Society (23 April 2008)
    by Damien Thevenin, Tzvetana Lazarova
    posted to folding gpcr structure transmembrane by xdeupi on 2008-04-28 11:00:29 as ** along with 1 person IrinaMoreira
  • Proline-induced distortions of transmembrane helices.
    J Mol Biol, Vol. 323, No. 5. (8 November 2002), pp. 951-960.
    by FS Cordes, JN Bright, MS Sansom
    posted to activation helix membrane_proteins pro-kink structure theory transmembrane by xdeupi on 2008-05-27 11:58:27 as ** along with 1 person thaliana
  • An amino acid "transmembrane tendency" scale that approaches the theoretical limit to accuracy for prediction of transmembrane helices: relationship to biological hydrophobicity.
    Protein Sci, Vol. 15, No. 8. (August 2006), pp. 1987-2001.
    by G Zhao, E London
    posted to helix sequence transmembrane by xdeupi on 2006-10-27 09:46:58 as ** along with 1 group LabCompMed
  • How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins?
    Biopolymers (12 July 2006)
    by Yungki Park, Volkhard Helms
    posted to helix sequence transmembrane by xdeupi on 2006-07-24 11:46:23 as ** along with 1 person and 1 group thaliana LabCompMed
  • Asymmetric stability among the transmembrane helices of lactose permease.
    Biochemistry, Vol. 45, No. 26. (4 July 2006), pp. 8088-8095.
    by M Bennett, R D'Rozario, MS Sansom, PL Yeagle
    posted to activation dynamics helix md modeling structure transmembrane by xdeupi on 2006-09-05 11:09:02 as ** along with 1 group LabCompMed
  • Missense mutations in transmembrane domains of proteins: phenotypic propensity of polar residues for human disease.
    Proteins, Vol. 54, No. 4. (1 March 2004), pp. 648-656.
    by AW Partridge, AG Therien, CM Deber
    posted to disease mutation ser transmembrane by xdeupi on 2006-01-27 14:31:44 as ** along with 1 group LabCompMed
  • Analysis of side-chain rotamers in transmembrane proteins.
    Biophysical journal, Vol. 87, No. 5. (November 2004), pp. 3460-3469.
    by AK Chamberlain, JU Bowie
    posted to flexibility hbond helix membrane_proteins ser serthr_paper structure thr transmembrane by xdeupi on 2008-05-15 11:35:47 as ** along with 1 person and 1 group carlk LabCompMed
  • Transmembrane helix uniformity examined by spectral mapping of torsion angles.
    Structure (London, England : 1993), Vol. 16, No. 5. (May 2008), pp. 787-797.
    by RC Page, S Kim, TA Cross
    posted to hbond helix structure transmembrane by xdeupi on 2008-05-13 16:04:28 as **
  • Comparison of stability predictions and simulated unfolding of rhodopsin structures.
    Photochem Photobiol, Vol. 83, No. 2. (r 2007), pp. 351-363.
    by O Tastan, E Yu, M Ganapathiraju, A Aref, AJ Rader, J Klein-Seetharaman
    posted to folding helix membrane_proteins mutation rhodopsin structure transmembrane by xdeupi on 2007-06-25 10:08:49 as ** along with 1 group LabCompMed
  • Tryptophan Supports Interaction of Transmembrane Helices.
    J Mol Biol (21 October 2005)
    by Anja Ridder, Paulina Skupjen, Stephanie Unterreitmeier, Dieter Langosch
    posted to helix transmembrane trp by xdeupi on 2005-11-11 22:08:07 as ** along with 1 person and 1 group thaliana LabCompMed
  • Metal Ion Site Engineering Indicates a Global Toggle Switch Model for Seven-transmembrane Receptor Activation.
    J Biol Chem, Vol. 281, No. 25. (23 June 2006), pp. 17337-17346.
    by CE Elling, TM Frimurer, LO Gerlach, R Jorgensen, B Holst, TW Schwartz
    posted to activation b2ar modeling pro-kink structure switch toggle transmembrane by xdeupi on 2006-07-04 12:17:13 as read along with 1 person and 1 group IrinaMoreira LabCompMed
  • Computational analysis of membrane proteins: genomic occurrence, structure prediction and helix interactions.
    Q Rev Biophys, Vol. 37, No. 2. (May 2004), pp. 121-146.
    by U Lehnert, Y Xia, TE Royce, CS Goh, Y Liu, A Senes, H Yu, ZL Zhang, DM Engelman, M Gerstein
    posted to membrane_proteins review serthr_paper structure theory transmembrane by xdeupi on 2008-05-01 19:11:17 as ***** along with 1 person thaliana
  • Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions.
    J Mol Biol, Vol. 296, No. 3. (25 February 2000), pp. 921-936.
    by A Senes, M Gerstein, DM Engelman
    posted to dimer folding gly helix membrane transmembrane by xdeupi on 2006-05-22 10:15:33 as read along with 1 group LabCompMed
  • TRAJELIX: A Computational Tool for the Geometric Characterization of Protein Helices During Molecular Dynamics Simulations
    Journal of Computer-Aided Molecular Design, Vol. 20, No. 2. (February 2006), pp. 97-107.
    by Mezei, Mihaly, Filizola, Marta
    posted to md modeling structure transmembrane by xdeupi on 2006-07-21 12:20:38 as ** along with 1 group LabCompMed
  • ZPRED: Predicting the distance to the membrane center for residues in alpha-helical membrane proteins.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by E Granseth, H Viklund, A Elofsson
    posted to helix loops membrane modeling structure transmembrane by xdeupi on 2006-09-05 10:16:39 as ***** along with 2 people and 1 group thaliana chrn LabCompMed
  • The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors.
    Proc Natl Acad Sci U S A, Vol. 101, No. 4. (27 January 2004), pp. 959-963.
    by S Yohannan, S Faham, D Yang, JP Whitelegge, JU Bowie
    posted to transmembrane structure sequence pro-kink mutation lmc_101 helix evolution by xdeupi on 2006-05-15 15:16:00 as ** along with 1 person and 1 group thaliana LabCompMed
  • Lipid Solvation Effects Contribute to the Affinity of Gly-xxx-Gly Motif-Mediated Helix-Helix Interactions.
    Biochemistry, Vol. 45, No. 28. (18 July 2006), pp. 8507-8515.
    by RM Johnson, A Rath, RA Melnyk, CM Deber
    posted to dimer gly helix lipids transmembrane by xdeupi on 2006-07-24 11:49:04 as ** along with 1 person and 1 group viktor21614 LabCompMed
    • Note: You may cite this page as: http://www.citeulike.org/tag/transmembrane

    Result page: 1 2 Next RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.