Tag transposon [at least 200 articles] Export

Recent papers classified by the tag transposon.

	Flying non-LTR retrotransposons: DNA transposons as freely available ”wings”? [My Copy] Retrovirology, Vol. 6, No. Suppl 2. (2009), P62. by Olga Novikova, Alexander Blinov posted to transposon horizontal_transfer evolution by operon on 2009-11-27 05:33:39 as
	Give-and-take: interactions between DNA transposons and their host plant genomes. [My Copy] Current opinion in genetics & development, Vol. 17, No. 6. (December 2007), pp. 486-492. by Hugo K. Dooner, Clifford F. Weil posted to transposon plant_genomes by orzenil on 2009-11-26 14:07:37 as
	Evidence for a common evolutionary origin of inverted repeat transposons in Drosophila and plants: hobo, activator, and Tam3 [My Copy] Cell, Vol. 66, No. 3. (09 August 1991), pp. 465-471. by B. Calvi posted to transposon projy horizontal_transfer evolution by operon on 2009-11-25 05:21:42 as
	Independent and parallel lateral transfer of DNA transposons in tetrapod genomes [My Copy] Gene, Vol. 449, No. 1-2. (01 January 2010), pp. 85-94. by Peter Novick, Jeremy Smith, David Ray, Stéphane Boissinot posted to transposon horizontal_transfer evolution by operon on 2009-11-25 05:21:17 as along with 1 person gwallau
	A Family of Human MicroRNA Genes from Miniature Inverted-Repeat Transposable Elements [My Copy] PLoS ONE, Vol. 2, No. 2. (2007), e203. by Jittima Piriyapongsa, I. King Jordan posted to transposon repeat microrna by tonamswish on 2009-11-22 15:57:33 as along with 2 people and 1 group andersbj mtagaya microRNA
	Origin and Evolution of Human microRNAs From Transposable Elements [My Copy] Genetics, Vol. 176, No. 2. (1 June 2007), pp. 1323-1337. by Jittima Piriyapongsa, Leonardo Marino-Ramirez, I. King Jordan posted to transposon repeat microrna by tonamswish on 2009-11-22 15:56:14 as along with 9 people and 5 groups daforerog coldmeadow gpappas tardigrade andersbj dchughes mtagaya cisevol emptyhb microRNA G4ID Genetics-of-Gambling cis-regulatory-evolution BergmanLab
	COMIT: Identification of noncoding motifs under selection in coding sequences [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R133. by Deniz Kural, Yang Ding, Jiantao Wu, Alicia Korpi, Jeffrey Chuang posted to transposon selection motifs evolution by operon on 2009-11-20 22:24:26 as along with 1 person maximilianh
	Pokey, a new DNA transposon in Daphnia (cladocera: crustacea). [My Copy] Journal of molecular evolution, Vol. 55, No. 6. (December 2002), pp. 664-673. by Erin H. Penton, Barry W. Sullender, Teresa J. Crease posted to transposon evolution by operon on 2009-11-20 20:48:52 as
	Molecular evolutionary analysis of the widespread piggyBac transposon family and related "domesticated" sequences. [My Copy] Molecular genetics and genomics : MGG, Vol. 270, No. 2. (November 2003), pp. 173-180. by A. Sarkar, C. Sim, Y. S. Hong, et al.J. R. Hogan, M. J. Fraser, H. M. Robertson, F. H. Collins posted to transposon evolution by operon on 2009-11-20 20:48:41 as
	Evolution of the transposable element Pokey in the ribosomal DNA of species in the subgenus Daphnia (Crustacea: Cladocera). [My Copy] Molecular biology and evolution, Vol. 21, No. 9. (September 2004), pp. 1727-1739. by Erin H. Penton, Teresa J. Crease posted to transposon evolution by operon on 2009-11-20 20:48:27 as
	The association between breeding system and transposable element dynamics in Daphnia pulex. [My Copy] Journal of molecular evolution, Vol. 66, No. 6. (June 2008), pp. 643-654. by Pegah Valizadeh, Teresa J. Crease posted to transposon evolution by operon on 2009-11-20 20:48:04 as
	Unexpected consequences of a sudden and massive transposon amplification on rice gene expression [My Copy] Nature, Vol. 461, No. 7267. (22 October 2009), pp. 1130-1134. by Ken Naito, Feng Zhang, Takuji Tsukiyama, et al.Hiroki Saito, C. Nathan Hancock, Aaron O. Richardson, Yutaka Okumoto, Takatoshi Tanisaka, Susan R. Wessler posted to transposon evolution by operon on 2009-11-19 21:38:27 as along with 3 people fenghezi bpcusack djkt
	Horizontal gene transfer in evolution: facts and challenges [My Copy] Proceedings of the Royal Society B: Biological Sciences (28 October 2009) by Luis Boto posted to transposon horizontal_transfer evolution by operon on 2009-11-19 00:08:31 as along with 1 person and 1 group gwallau LabDros
	A phylogenomic approach to resolve the basal pterygote divergence. [My Copy] Molecular biology and evolution, Vol. 26, No. 12. (December 2009), pp. 2719-2730. by Sabrina Simon, Sascha Strauss, Arndt von Haeseler, Heike Hadrys posted to transposon phylogenetics phylogenetic_analyses genomics evolution by operon on 2009-11-17 00:27:09 as
	Maintenance of transposon-free regions throughout vertebrate evolution [My Copy] BMC Genomics, Vol. 8, No. 1. (20 December 2007), 470. by Cas Simons, Igor Makunin, Michael Pheasant, John Mattick posted to transposon evolution by operon on 2009-11-17 00:26:34 as along with 3 people and 2 groups blobbybirdman cisevol idonaldson cis-regulatory-evolution BergmanLab
	Extreme resistance of bdelloid rotifers to ionizing radiation [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 13. (1 April 2008), pp. 5139-5144. by Eugene Gladyshev, Matthew Meselson posted to transposon evolution by operon on 2009-11-17 00:25:59 as along with 1 person mblwhoi
	Retrotransposons within Syntenic Regions between Soybean and Medicago truncatula and Their Contribution to Local Genome Evolution [My Copy] The Plant Genome, Vol. 2, No. 3. (November 2009), pp. 211-223. by Bindu Joseph, Jessica A. Schlueter, Jianchang Du, Michelle A. Graham, Jianxin Ma, Randy C. Shoemaker posted to transposon evolution by operon on 2009-11-17 00:25:45 as
	The Fate of Transposable Elements in Asexual Populations [My Copy] Genetics, Vol. 174, No. 2. (1 October 2006), pp. 817-827. by Elie S. Dolgin, Brian Charlesworth posted to transposon evolution by operon on 2009-11-17 00:25:25 as
	Evolution and Horizontal Transfer of a DD37E DNA Transposon in Mosquitoes [My Copy] Genetics, Vol. 177, No. 4. (1 December 2007), pp. 2553-2558. by James K. Biedler, Hongguang Shao, Zhijian Tu posted to transposon evolution by operon on 2009-11-17 00:25:18 as
	Diverse DNA transposons in rotifers of the class Bdelloidea [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 33. (16 August 2005), pp. 11781-11786. by Irina R. Arkhipova, Matthew Meselson posted to transposon evolution by operon on 2009-11-17 00:25:10 as
	Identification of Active Transposon dTok, a Member of the hAT Family, in Rice [My Copy] Plant Cell Physiol., Vol. 47, No. 11. (1 November 2006), pp. 1473-1483. by Sunok Moon, Ki-Hong Jung, Do-eun Lee, et al.Wen-Zhu Jiang, Hee J. Koh, Mun-Hue Heu, Dong S. Lee, Hak S. Suh, Gynheung An posted to transposon evolution by operon on 2009-11-17 00:23:00 as
	Large-Scale cis-Element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea [My Copy] Plant Physiol., Vol. 142, No. 4. (1 December 2006), pp. 1589-1602. by Georg Haberer, Michael T. Mader, Peter Kosarev, Manuel Spannagl, Li Yang, Klaus F. X. Mayer posted to transposon evolution by operon on 2009-11-16 23:57:02 as along with 5 people and 1 group dpollard xwbcn kengg nklee xili03 EisenLab
	Evolution of Teleost Fish Retroviruses: Characterization of New Retroviruses with Cellular Genes [My Copy] J. Virol., Vol. 83, No. 19. (1 October 2009), pp. 10152-10162. by Holly A. Basta, Sean B. Cleveland, Rochelle A. Clinton, Alexander G. Dimitrov, Marcella A. McClure posted to transposon evolution by operon on 2009-11-16 23:49:47 as
	An Ac-like Transposable Element Family With Transcriptionally Active Y-Linked Copies in the White Campion, Silene latifolia [My Copy] Genetics, Vol. 165, No. 2. (1 October 2003), pp. 799-807. by Ellen J. Pritham, Y. Hi Zhang, Cedric Feschotte, Rick V. Kesseli posted to transposon evolution by operon on 2009-11-16 23:47:37 as
	Vege and Mar: Two Novel hAT MITE Families from Drosophila willistoni [My Copy] Mol Biol Evol, Vol. 20, No. 2. (1 February 2003), pp. 163-167. by Andrew J. Holyoake, Margaret G. Kidwell posted to transposon evolution by operon on 2009-11-16 23:47:33 as
	Acquisition of Endonuclease Specificity during Evolution of L1 Retrotransposon [My Copy] Mol Biol Evol, Vol. 24, No. 9. (1 September 2007), pp. 2009-2015. by Kenji Ichiyanagi, Hidenori Nishihara, David D. Duvernell, Norihiro Okada posted to transposon evolution by operon on 2009-11-16 23:44:30 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	mRNA Retrotransposition Coupled with 5' Inversion as a Possible Source of New Genes [My Copy] Mol Biol Evol, Vol. 26, No. 6. (1 June 2009), pp. 1405-1420. by Kenji K. Kojima, Norihiro Okada posted to transposon evolution by operon on 2009-11-16 23:44:18 as along with 4 people djkt dchughes bpcusack clearbluespring
	Transcendent Elements: Whole-Genome Transposon Screens and Open Evolutionary Questions [My Copy] Genome Research, Vol. 12, No. 8. (1 August 2002), pp. 1152-1155. by Ian Holmes posted to transposon evolution by operon on 2009-11-16 23:41:47 as
	An alternative approach to medical genetics based on modern evolutionary biology. Part 2: retroviral symbiosis [My Copy] J R Soc Med, Vol. 102, No. 8. (1 August 2009), pp. 324-331. by Frank P. Ryan posted to transposon evolution by operon on 2009-11-16 23:40:13 as
	Retroposed SNOfallâA mammalian-wide comparison of platypus snoRNAs [My Copy] Genome Research, Vol. 18, No. 6. (June 2008), pp. 1005-1010. by JÃ¼rgen Schmitz, Anja Zemann, Gennady Churakov, et al.Heiner Kuhl, Frank GrÃ¼tzner, Richard Reinhardt, JÃ¼rgen Brosius posted to transposon evolution by operon on 2009-11-16 23:39:40 as
	Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (25 October 2006), 474. by Oleksiy Kohany, Andrew Gentles, Lukasz Hankus, Jerzy Jurka posted to transposon evolution by operon on 2009-11-16 23:39:15 as along with 5 people natstreet orzenil yoanjacquemin niallhaslam timflutre
	Subtraction by addition: domesticated transposases in programmed DNA elimination [My Copy] Genes & Development, Vol. 23, No. 21. (1 November 2009), pp. 2455-2460. by Jason A. Motl, Douglas L. Chalker posted to transposon evolution by operon on 2009-11-16 23:38:32 as
	Automated recognition of retroviral sequences in genomic data RetroTector(C) [My Copy] Nucl. Acids Res., Vol. 35, No. 15. (1 August 2007), pp. 4964-4976. by Goran O. Sperber, Tove Airola, Patric Jern, Jonas Blomberg posted to transposon evolution by operon on 2009-11-16 23:37:58 as along with 2 people and 1 group cabbagezs yoanjacquemin Bioinformatics
	A deletion-generator compound element allows deletion saturation analysis for genomewide phenotypic annotation [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 15. (23 July 2002), pp. 9948-9953. by FranÃ§ois Huet, Jeffrey T. Lu, Kyl V. Myrick, L. Ryan Baugh, Madeline A. Crosby, William M. Gelbart posted to transposon evolution by operon on 2009-11-16 23:37:20 as
	Protein coding potential of retroviruses and other transposable elements in vertebrate genomes [My Copy] Nucl. Acids Res., Vol. 33, No. 3. (16 February 2005), pp. 946-954. by Evgeny M. Zdobnov, Mónica Campillos, Eoghan D. Harrington, David Torrents, Peer Bork posted to transposon evolution by operon on 2009-11-16 23:34:23 as along with 2 people and 2 groups urgi dchughes G4ID Genetics-of-Gambling
	A novel mode of enhancer evolution: The Tal1 stem cell enhancer recruited a MIR element to specifically boost its activity [My Copy] Genome Research, Vol. 18, No. 9. (7 September 2008), pp. 1422-1432. by Aileen M. Smith, Maria-Jose Sanchez, George A. Follows, et al.Sarah Kinston, Ian J. Donaldson, Anthony R. Green, Berthold GÃ¶ttgens posted to transposon evolution by operon on 2009-11-16 23:33:51 as along with 4 people and 2 groups cisstem emptyhb maximilianh cisevol BergmanLab cis-regulatory-evolution
	Mobility Pathways for Vertebrate L1, L2, CR1, and RTE Clade Retrotransposons [My Copy] Mol Biol Evol, Vol. 25, No. 6. (1 June 2008), pp. 1148-1157. by Kenji Ichiyanagi, Norihiro Okada posted to transposon evolution by operon on 2009-11-16 23:33:31 as
	The opossum genome: Insights and opportunities from an alternative mammal [My Copy] Genome Research, Vol. 18, No. 8. (August 2008), pp. 1199-1215. by Paul B. Samollow posted to transposon evolution by operon on 2009-11-16 23:33:27 as along with 1 person aprasad
	Possible involvement of SINEs in mammalian-specific brain formation [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 11. (18 March 2008), pp. 4220-4225. by Takeshi Sasaki, Hidenori Nishihara, Mika Hirakawa, et al.Koji Fujimura, Mikiko Tanaka, Nobuhiro Kokubo, Chiharu Kimura-Yoshida, Isao Matsuo, Kenta Sumiyama, Naruya Saitou, Tomomi Shimogori, Norihiro Okada posted to transposon evolution by operon on 2009-11-16 23:33:22 as along with 2 people and 2 groups FMoncini cisevol BergmanLab cis-regulatory-evolution
	The necessary junk: new functions for transposable elements [My Copy] Hum. Mol. Genet., Vol. 16, No. R2. (15 October 2007), pp. R159-167. by Alysson R. Muotri, Maria C. N. Marchetto, Nicole G. Coufal, Fred H. Gage posted to transposon evolution annotation by operon on 2009-11-16 23:31:00 as along with 7 people and 2 groups TimRooney sbottani andreasapostolides dchughes gpappas RaquelSL ArtemPankin BergmanLab Khavkin's lab
	5â²-Transducing SVA retrotransposon groups spread efficiently throughout the human genome [My Copy] Genome Research, Vol. 19, No. 11. (3 November 2009), pp. 1992-2008. by Annette Damert, Julija Raiz, Axel V. Horn, et al.Johannes LÃ¶wer, Hui Wang, Jinchuan Xing, Mark A. Batzer, Roswitha LÃ¶wer, Gerald G. Schumann posted to transposon evolution annotation by operon on 2009-11-16 23:22:19 as
	Mobile elements create structural variation: Analysis of a complete human genome [My Copy] Genome Research, Vol. 19, No. 9. (13 September 2009), pp. 1516-1526. by Jinchuan Xing, Yuhua Zhang, Kyudong Han, et al.Abdel H. Salem, Shurjo K. Sen, Chad D. Huff, Qiong Zhou, Ewen F. Kirkness, Samuel Levy, Mark A. Batzer, Lynn B. Jorde posted to transposon evolution annotation by operon on 2009-11-16 23:22:13 as along with 10 people and 1 group n00c djkt sameersoi APRegier dchughes fenghezi jandot Dulcinea natstreet JustinCrocker Journal picks
	Exon-trapping mediated by the human retrotransposon SVA [My Copy] Genome Research, Vol. 19, No. 11. (27 November 2009), pp. 1983-1991. by Dustin C. Hancks, Adam D. Ewing, Jesse E. Chen, Katsushi Tokunaga, Haig H. Kazazian posted to transposon evolution annotation by operon on 2009-11-16 23:21:53 as along with 1 person bpcusack
	Cross-Sectional Dating of Novel Haplotypes of HERV-K 113 and HERV-K 115 Indicate These Proviruses Originated in Africa before Homo sapiens [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2617-2626. by Aashish R. Jha, Satish K. Pillai, Vanessa A. York, et al.Elizabeth R. Sharp, Emily C. Storm, Douglas J. Wachter, Jeffrey N. Martin, Steven G. Deeks, Michael G. Rosenberg, Douglas F. Nixon, Keith E. Garrison posted to transposon evolution annotation by operon on 2009-11-16 23:21:29 as
	Adplot: detection and visualization of repetitive patterns in complete genomes [My Copy] Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 701-708. by Akito Taneda posted to transposon repeat evolution annotation by operon on 2009-11-16 23:16:49 as along with 1 person GustavoLacerda
	Structural and Evolutionary Analyses of the Ty3/gypsy Group of LTR Retrotransposons in the Genome of Anopheles gambiae [My Copy] Mol Biol Evol, Vol. 22, No. 1. (1 January 2005), pp. 29-39. by Jose M. Tubio, Horacio Naveira, Javier Costas posted to transposon evolution annotation by operon on 2009-11-16 23:12:23 as
	Computational Finishing of Large Sequence Contigs Reveals Interspersed Nested Repeats and Gene Islands in the rf1-Associated Region of Maize [My Copy] Plant Physiol., Vol. 151, No. 2. (1 October 2009), pp. 483-495. by Brent A. Kronmiller, Roger P. Wise posted to transposon evolution annotation by operon on 2009-11-16 23:12:11 as
	Using GeneWise in the Drosophila Annotation Experiment [My Copy] Genome Research, Vol. 10, No. 4. (1 April 2000), pp. 547-548. by Ewan Birney, Richard Durbin posted to transposon evolution annotation by operon on 2009-11-16 23:11:34 as along with 2 people and 1 group rshe wenhan MBLAB
	Genome annotation past, present, and future: How to define an ORF at each locus [My Copy] Genome Research, Vol. 15, No. 12. (December 2005), pp. 1777-1786. by Michael R. Brent posted to transposon evolution annotation by operon on 2009-11-16 23:11:30 as along with 7 people and 1 group timhubbard jasontsai orzenil textoris Ayest indigoviolet wenhan EisenLab
	CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes [My Copy] Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1061-1067. by Genis Parra, Keith Bradnam, Ian Korf posted to transposon evolution annotation by operon on 2009-11-16 23:11:27 as along with 6 people and 2 groups orzenil guhjy indigoviolet stajich wenhan GustavoLacerda EisenLab Mycology

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evolution	361
mammals	126
cis-regulatory	101
genomics	99
retroelement	59
annotation	51
phylogenetics	44
drosophila	42
repeats	34
arthropod	33
genome	27
repeat	25
transposition	25
doctorate	24
retrotransposon	21
flies	20
horizontal_transfer	20
plant	20
retrotransposition	20
epigenetics	19
bioinformatics	18
noncoding	18
genetics	16
methylation	16
review	16
mammal	15
transcription	15
dna	12
human	12
gene	11
helitron	11
population	11
genome_evolution	10
insect	10
pathogenics	10
selection	10
duplication	9
rice	9
bacteria	8
elements	8
software	8
transposable_elements	8
tree	8
454	7
expression	7
intron	7
maize	7
method	7
p-element	7
rnai	7
alternative	6
alu	6
chromatin	6
dna-methylation	6
genome_size	6
ipomoea	6
master	6
mirna	6
mite	6
mobile	6
promoter	6
rare_genomic_characters	6
rna	6
single_strand	6
structure	6
tip100	6
transposable	6
cell	5
eukaryotic	5
grass	5
molecular	5
mutagenesis	5
pirna	5
plant_biology	5
plants	5
prokaryote	5
regulation	5
sandmeyerproject	5
transposase	5
ty3	5
yeast	5
biology	4
centromere	4
chromosome	4
coalescence	4
francisella	4
genetic_genomics	4
imprinting	4
indel	4
insertion	4
microarray	4
mutation	4
screen	4
simulation	4
sine	4
solanaceae	4
variation	4
exon	3
haplotype	3
perfringens	3

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