Tag trna [at least 200 articles] Export

Recent papers classified by the tag trna.

	Innate immune and chemically triggered oxidative stress modifies translational fidelity [My Copy] Nature, Vol. 462, No. 7272. (26 November 2009), pp. 522-526. by Nir Netzer, Jeffrey M. Goodenbour, Alexandre David, et al.Kimberly A. Dittmar, Richard B. Jones, Jeffrey R. Schneider, David Boone, Eva M. Eves, Marsha R. Rosner, James S. Gibbs, Alan Embry, Brian Dolan, Suman Das, Heather D. Hickman, Peter Berglund, Jack R. Bennink, Jonathan W. Yewdell, Tao Pan posted to trna translation new by pmalkus on 2009-12-05 23:27:38 as along with 1 person qm
	Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs [My Copy] RNA, Vol. 15, No. 12. (22 December 2009), pp. 2147-2160. by Christian Cole, Andrew Sobala, Cheng Lu, et al.Shawn R. Thatcher, Andrew Bowman, John W. S. Brown, Pamela J. Green, Geoffrey J. Barton, Gyorgy Hutvagner posted to trna small sequencing by gdb on 2009-11-30 13:13:50 as along with 1 person gbloeb
	Splicing of mRNA mediated by tRNA sequences in mouse cells [My Copy] RNA, Vol. 15, No. 12. (December 2009), pp. 2122-2128. by Michela Zamboni, Daniela Scarabino, Glauco P. Tocchini-Valentini posted to trna splicing mrna by gdb on 2009-11-30 11:56:30 as
	A novel class of small RNAs: tRNA-derived RNA fragments (tRFs) [My Copy] Genes and Development, Vol. 23, No. 22. (15 November 2009), pp. 2639-2649. by Yong S. Lee, Yoshiyuki Shibata, Ankit Malhotra, Anindya Dutta posted to trna small-rna high-throughput-sequencing by heliopais on 2009-11-19 09:54:08 as along with 1 person and 1 group ppgardne Journal picks
	Molecular biology. A renewed focus on transfer RNA. [My Copy] Science (New York, N.Y.), Vol. 308, No. 5725. (20 May 2005), pp. 1123-1124. by Tina Daviter, Frank V. Murphy, V. Ramakrishnan posted to trna tf by caducadu on 2009-11-12 10:21:46 as
	tRNA over-expression in breast cancer and functional consequences. [My Copy] Nucleic acids research (25 September 2009) by Mariana Pavon-Eternod, Suzanna Gomes, Renaud Geslain, Qing Dai, Marsha Rich R. Rosner, Tao Pan posted to usage trna concentration codon cancer breast by saunders on 2009-11-03 14:23:17 as
	Clustering of codons with rare cognate tRNAs in human genes suggests an extra level of expression regulation. [My Copy] PLoS genetics, Vol. 5, No. 7. (3 July 2009), e1000548. by Joanna L. Parmley, Martijn A. Huynen posted to usage trna slow human codons codon cluster by saunders on 2009-11-03 14:11:30 as along with 4 people danatcaret hrogers bpcusack djkt
	Co-variation of tRNA Abundance and Codon Usage inEscherichia coliat Different Growth Rates [My Copy] Journal of Molecular Biology, Vol. 260, No. 5. (2 August 1996), pp. 649-663. by H. Dong posted to usage trna mrna ecoli concentration codon by saunders on 2009-10-27 15:13:25 as
	Codon-usage bias versus gene conversion in the evolution of yeast duplicate genes. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 39. (26 September 2006), pp. 14412-14416. by Yeong-Shin S. Lin, Jake K. Byrnes, Jenn-Kang K. Hwang, Wen-Hsiung H. Li posted to usage trna gene evolution conversion codon by saunders on 2009-10-26 12:32:05 as along with 1 person bpcusack
	Crystal structure of human selenocysteine tRNA [My Copy] Nucl. Acids Res., Vol. 37, No. 18. (1 October 2009), pp. 6259-6268. by Yuzuru Itoh, Shiho Chiba, Shun-ichi Sekine, Shigeyuki Yokoyama posted to trna rna ncrna crystal_structure by ppgardne to the group Journal picks on 2009-10-20 08:55:45 as
	Inferring consensus structure from nucleic acid sequences [My Copy] Comput. Appl. Biosci., Vol. 7, No. 3. (1 July 1991), pp. 347-352. by David K. Y. Chiu, Ted Kolodziejczak posted to trna secondary_structure rna mutual_information covariance_model by jeargle on 2009-10-06 17:51:19 as
	Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods [My Copy] Nucl. Acids Res., Vol. 20, No. 21. (11 November 1992), pp. 5785-5795. by R. R. Gutell, A. Power, G. Z. Hertz, E. J. Putz, G. D. Stormo posted to trna secondary_structure rna mutual_information covariance_model by jeargle on 2009-10-06 17:48:04 as
	Universal function-specificity of codon usage. [My Copy] Nucleic acids research (22 September 2009), gkp792. by Hamed Shateri S. Najafabadi, Hani Goodarzi, Reza Salavati posted to trna codon_bias by hrogers on 2009-09-28 10:32:16 as along with 1 person saunders
	Expanding the Genetic Code of Escherichia coli [My Copy] Science, Vol. 292, No. 5516. (20 April 2001), pp. 498-500. by Lei Wang, Ansgar Brock, Brad Herberich, Peter G. Schultz posted to trna genetic_code escherichia_coli aars by jeargle on 2009-09-25 23:51:38 as along with 2 people kirasato caldavis
	Solution Conformations of Unmodified and A37N6-dimethylallyl Modified Anticodon Stem-loops of Escherichia coli tRNAPhe [My Copy] Journal of Molecular Biology, Vol. 319, No. 5. (21 June 2002), pp. 1015-1034. by Javier Cabello-Villegas, Malcolm E. Winkler, Edward P. Nikonowicz posted to trna nmr modified_nucleotides by jeargle on 2009-09-25 23:49:21 as
	RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNAAsp anticodon hairpin [My Copy] Journal of Molecular Biology, Vol. 269, No. 3. (13 June 1997), pp. 326-341. by P. Auffinger posted to water trna molecular_dynamics by jeargle on 2009-09-25 23:47:55 as
	A Counterintuitive Mg2+-dependent and Modification-assisted Functional Folding of Mitochondrial tRNAs [My Copy] Journal of Molecular Biology, Vol. 362, No. 4. (29 September 2006), pp. 771-786. by C. Jones, A. Spencer, J. Hsu, et al.L. Spremulli, S. Martinis, M. Derider, P. Agris posted to trna mitochondria magnesium ion by jeargle on 2009-09-25 23:46:39 as
	Post-transcriptional nucleotide modification and alternative folding of RNA [My Copy] Nucl. Acids Res., Vol. 34, No. 2. (1 February 2006), pp. 721-733. by Mark Helm posted to trna rna modified_nucleotides by jeargle on 2009-09-25 23:43:37 as
	The 51â63 base pair of tRNA confers specificity for binding by EF-Tu [My Copy] RNA, Vol. 13, No. 6. (June 2007), pp. 835-840. by Lee E. Sanderson, Olke C. Uhlenbeck posted to trna ef-tu by jeargle on 2009-09-25 21:20:38 as
	The Affinity of Elongation Factor Tu for an Aminoacyl-tRNA Is Modulated by the Esterified Amino Acid† [My Copy] Biochemistry, Vol. 43, No. 20. (1 May 2004), pp. 6159-6166. by Taraka Dale, Lee E. Sanderson, Olke C. Uhlenbeck posted to trna ef-tu by jeargle on 2009-09-25 21:19:45 as
	Uniform Binding of Aminoacyl-tRNAs to Elongation Factor Tu by Thermodynamic Compensation [My Copy] Science, Vol. 294, No. 5540. (5 October 2001), pp. 165-168. by Frederick J. LaRiviere, Alexey D. Wolfson, Olke C. Uhlenbeck posted to trna ef-tu by jeargle on 2009-09-25 19:49:06 as
	Indirect Readout of tRNA for Aminoacylation† [My Copy] Biochemistry, Vol. 46, No. 37. (1 September 2007), pp. 10419-10432. by John J. Perona, Ya-Ming Hou posted to trna aars by jeargle on 2009-09-25 19:48:18 as
	Unusual modification patterns in the transfer ribonucleic acids of archaebacteria [My Copy] Current Microbiology, Vol. 4, No. 4. (1 July 1980), pp. 245-249. by Ramesh Gupta, Carl Woese posted to trna modified_nucleotides archaea by jeargle on 2009-09-25 19:09:07 as
	Atypical archaeal tRNA pyrrolysine transcript behaves towards EF-Tu as a typical elongator tRNA [My Copy] Nucl. Acids Res., Vol. 32, No. 3. (10 February 2004), pp. 1091-1096. by Anne Theobald-Dietrich, Magali Frugier, Richard Giege, Joelle Rudinger-Thirion posted to trna pyrrolysine methanosarcina ef-tu by jeargle on 2009-09-25 19:02:52 as
	Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog. [My Copy] Science (New York, N.Y.), Vol. 270, No. 5241. (1 December 1995), pp. 1464-1472. by P. Nissen, M. Kjeldgaard, S. Thirup, et al.G. Polekhina, L. Reshetnikova, B. F. Clark, J. Nyborg posted to trna ef-tu crystal_structure by jeargle on 2009-09-25 18:58:00 as
	Formal Proof that the Split Genes of tRNAs of Nanoarchaeum equitans Are an Ancestral Character [My Copy] Journal of Molecular Evolution by Massimo Di Giulio posted to trna rna_world by hrogers on 2009-09-21 09:28:11 as
	Generic algorithm to predict the speed of translational elongation: implications for protein biogenesis. [My Copy] PloS one, Vol. 4, No. 4. (2009) by Gong Zhang, Zoya Ignatova posted to trna protein_expression codon_optimisation bioinformatics analysis by Vincent_Rouilly on 2009-09-15 17:48:28 as along with 1 person saunders
	IONS AND RNA FOLDING [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 34, No. 1. (2005), pp. 221-243. by David E. Draper, Dan Grilley, Ana M. Soto posted to trna by samcho on 2009-09-14 04:51:18 as along with 1 person aip
	Dynamical networks in tRNA:protein complexes [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6620-6625. by Anurag Sethi, John Eargle, Alexis A. Black, Zaida Luthey-Schulten posted to trna network md leurs glurs aars by jeargle on 2009-08-31 18:36:59 as along with 4 people and 2 groups anuragsethi AbnerCYH jmccammon sobolevnrm McCammon baker-group
	Dynamics of Recognition between tRNA and Elongation Factor Tu [My Copy] Journal of Molecular Biology, Vol. 377, No. 5. (11 April 2008), pp. 1382-1405. by John Eargle, Alexis A. Black, Anurag Sethi, Leonardo G. Trabuco, Zaida Luthey-Schulten posted to trna md ef-tu by jeargle on 2009-08-31 18:25:29 as along with 1 person and 1 group sobolevnrm baker-group
	The Evolution of tRNA-Leu Genes in Animal Mitochondrial Genomes [My Copy] Journal of Molecular Evolution, Vol. 57, No. 4. (1 October 2003), pp. 435-445. by Paulg Higgs, Daniel Jameson, Howsun Jow, Magnus Rattray posted to trna anticodon_flip anticodon by hrogers on 2009-08-28 15:16:48 as along with 1 person samgj
	Variable correlation of genome GC% with transfer RNA number as well as with transfer RNA diversity among bacterial groups: α-Proteobacteria and Tenericutes exhibit strong positive correlation [My Copy] Microbiological Research (26 August 2009) by Siddhartha S. Satapathy, Malay Dutta, Suvendra K. Ray posted to trna metrics isis genomics gc-content alphaproteobacteria by behindtherabbit on 2009-08-27 19:25:58 as
	Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome [My Copy] Genome Biology, Vol. 3, No. 12. (2002) by Casey Bergman, Barret Pfeiffer, Diego R. Limas, et al.Roger Hoskins, Andreas Gnirke, Chris Mungall, Adrienne Wang, Brent Kronmiller, Joanne Pacleb, Soo Park, Mark Stapleton, Kenneth Wan, Reed George, Pieter de Jong, Juan Botas, Gerald Rubin, Susan Celniker posted to trna genomics drosophila codon_bias codon by hrogers on 2009-08-19 12:43:46 as along with 5 people and 2 groups indigoviolet dpollard nklee cisevol brant EisenLab cis-regulatory-evolution
	Superwobbling facilitates translation with reduced tRNA sets [My Copy] Nat Struct Mol Biol, Vol. 15, No. 2. (13 February 2008), pp. 192-198. by Marcelo Rogalski, Daniel Karcher, Ralph Bock posted to wobble trna codon anticodon by hrogers on 2009-08-19 12:15:09 as
	Stressing Out over tRNA Cleavage [My Copy] Vol. 138, No. 2. (23 July 2009), pp. 215-219. by Debrah M. Thompson, Roy Parker posted to trna small rna regulatory by gdb on 2009-08-17 17:09:52 as
	tRNAdb 2009: compilation of tRNA sequences and tRNA genes. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D159-162. by Frank Jühling, Mario Mörl, Roland K. Hartmann, Mathias Sprinzl, Peter F. Stadler, Joern Pütz posted to trna prediction database by gdb on 2009-08-13 13:35:22 as
	tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features. [My Copy] RNA (New York, N.Y.), Vol. 8, No. 10. (October 2002), pp. 1189-1232. by Christian Marck, Henri Grosjean posted to trna by danatcaret on 2009-08-01 00:40:52 as along with 4 people codonusage hrogers evaf mtagaya
	Transfer RNA genes in pieces [My Copy] EMBO Reports, Vol. aop, No. current. (13 June 2008) by Lennart Randau, Dieter Soll posted to trna by danatcaret on 2009-08-01 00:05:54 as along with 1 person vwchan
	tRNA cleavage is a conserved response to oxidative stress in eukaryotes. [My Copy] RNA (New York, N.Y.), Vol. 14, No. 10. (October 2008), pp. 2095-2103. by D. M. Thompson, C. Lu, P. J. Green, R. Parker posted to trna by danatcaret on 2009-07-31 14:23:52 as along with 1 person vwchan
	RNA sequence analysis using covariance models [My Copy] Nucl. Acids Res., Vol. 22, No. 11. (11 June 1994), pp. 2079-2088. by Sean R. Eddy, Richard Durbin posted to alignment mutation software trna by danatcaret on 2009-07-31 00:23:46 as along with 6 people and 1 group jengeldk evaf arcticrasta vwchan raylim elfar beta
	tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. [My Copy] Nucleic acids research, Vol. 25, No. 5. (1 March 1997), pp. 955-964. by T. M. Lowe, S. R. Eddy posted to alignment software trna by danatcaret on 2009-07-30 23:56:08 as along with 12 people and 1 group azazello codonusage tfuji gdb ziquje evaf arcticrasta dquest vwchan djkt dandaman timflutre beta
	Evolution of transfer RNA molecules as a repetitive process. [My Copy] Biochemical and biophysical research communications, Vol. 49, No. 1. (6 October 1972), pp. 212-216. by T. H. Jukes, R. Holmquist posted to economy selfish trna by danatcaret on 2009-07-30 21:36:36 as
	Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs. [My Copy] Journal of molecular biology, Vol. 158, No. 4. (15 July 1982), pp. 573-597. by T. Ikemura posted to ecoli economy highlyexpressed trna by danatcaret on 2009-07-30 20:37:42 as along with 3 people and 1 group michaelbarton bjorns cisevol BergmanLab
	Archaeology and evolution of transfer RNA genes in the Escherichia coli genome [My Copy] RNA, Vol. 12, No. 6. (June 2006), pp. 933-942. by Mike Withers, Lorenz Wernisch, Mario D. Reis posted to ecoli economy highlyexpressed trna by danatcaret on 2009-07-30 19:56:22 as along with 2 people hrogers evodeva
	tRNA genes as chromatin barriers [My Copy] Nat Struct Mol Biol, Vol. 13, No. 3. (March 2006), pp. 192-193. by Devyani Haldar, Rohinton T. Kamakaka posted to chromatin genomics trna by hrogers on 2009-07-28 12:50:02 as
	Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5[prime]- and 3[prime]-halves [My Copy] Nature, Vol. 433, No. 7025. (3 February 2005), pp. 537-541. by Lennart Randau, Richard Munch, Michael J. Hohn, Dieter Jahn, Dieter Soll posted to trna by YukaH on 2009-07-21 08:10:34 as
	Comprehensive Analysis of Archaeal tRNA Genes Reveals Rapid Increase of tRNA Introns in the Order Thermoproteales [My Copy] Mol Biol Evol, Vol. 25, No. 12. (1 December 2008), pp. 2709-2716. by Junichi Sugahara, Kaoru Kikuta, Kosuke Fujishima, Nozomu Yachie, Masaru Tomita, Akio Kanai posted to trna by YukaH on 2009-07-21 07:56:05 as along with 2 people nzm vwchan
	In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs [My Copy] RNA, Vol. 13, No. 5. (May 2007), pp. 671-681. by Junichi Sugahara, Nozomu Yachie, Kazuharu Arakawa, Masaru Tomita posted to trna by YukaH on 2009-07-21 07:55:55 as along with 1 person nzm
	Is tRNA only a translation factor or also a regulator of other processes? [My Copy] Journal of applied genetics, Vol. 49, No. 1. (2008), pp. 115-122. by G. Wegrzyn, A. Wegrzyn posted to trna by YukaH on 2009-07-21 07:49:59 as along with 1 person evodeva
	Tri-split tRNA is a transfer RNA made from 3 transcripts that provides insight into the evolution of fragmented tRNAs in archaea [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 8. (24 February 2009), pp. 2683-2687. by Kosuke Fujishima, Junichi Sugahara, Kaoru Kikuta, et al.Reiko Hirano, Asako Sato, Masaru Tomita, Akio Kanai posted to trna by YukaH on 2009-07-21 07:42:52 as along with 1 person mhamada

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rna	47
c_elegans	38
caenorhabditis_elegans	38
celegans	38
elegans	38
nematode	38
wormbase	38
article	36
transcription	30
cloned_genes	26
ncrna	23
codon	20
evolution	19
dna_sequence	18
prediction	17
mrna	16
anticodon_flip	14
cluster	14
protein	13
translation	13
genomics	12
regulation	12
ribosome	12
suppressor-nonsense	12
polymerase	11
yeast	10
la	9
b0523t1	8
c03b1t1	8
database	8
genome	8
insertion-site	8
regulatory_sequence	8
structure	8
sup-5	8
sup-7	8
anticodon	7
ef-tu	7
review	7
saccharomyces	7
crystal_structure	6
eukaryote	6
gene	6
human	6
splicing	6
transcription-in_vit	6
cerevisiae	5
fragment	5
phage	5
usage	5
aars	4
aminoacyl_trna_synthetase	4
archaea	4
bias	4
cell	4
codon-usage	4
development	4
dna	4
ecoli	4
economy	4
eukaryotic	4
gene-expression	4
gene_family	4
integration	4
introns	4
motif	4
mutant_characteriz	4
noncoding	4
phosphoprotein	4
pombe	4
regulatory	4
reversion	4
schizosaccharomyces	4
yachie	4
zcite	4
amino-acid-usage	3
codon_bias	3
codonbias	3
drosophila	3
function	3
gene-characteristics	3
genetic	3
genetic_code	3
highlyexpressed	3
lateral_gene_transfer	3
mitochondria	3
modified_nucleotides	3
mrnas	3
mt	3
nmr	3
pseudogenes	3
secondary_structure	3
selenocysteine	3
small	3
stress	3
translational-selection	3
trna-copy	3
trna-like	3
virus	3
genome_bioinformatics	2

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