Tag tss [77 articles] Export

Recent papers classified by the tag tss.

	Toward a gold standard for promoter prediction evaluation. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i313-320. by Thomas Abeel, Yves Van de Peer, Yvan Saeys posted to tss tfbs prediction cage benchmarks by bedo on 2009-12-20 06:15:36 as along with 8 people and 1 group ilyashl daforerog dquest marti druvus AlexBateman tonamswish djkt Journal picks
	miRGen 2.0: a database of microRNA genomic information and regulation [My Copy] Nucleic acids research In Nucl. Acids Res. (17 November 2009), gkp888. by Panagiotis Alexiou, Thanasis Vergoulis, Martin Gleditzsch, et al.George Prekas, Theodore Dalamagas, Molly Megraw, Ivo Grosse, Timos Sellis, Artemis G. Hatzigeorgiou posted to tss snp mirna journalclub database by manto to the group cube_and_beyond on 2009-12-02 10:01:21 as along with 7 people and 1 group heliopais bsamal guhjy gbloeb songpku daforerog hrogers microRNA
	Staphylococcal Toxic Shock Syndrome Erythroderma Is Associated with Superantigenicity and Hypersensitivity. [My Copy] Clinical infectious diseases : an official publication of the Infectious Diseases Society of America (13 November 2009) by Chandy C. John, Micah Niermann, Bazak Sharon, Marnie L. Peterson, David M. Kranz, Patrick M. Schlievert posted to tss staphylococcus by Amazoness on 2009-11-25 03:44:15 as
	High DNA melting temperature predicts transcription start site location in human and mouse [My Copy] Nucl. Acids Res., Vol. 37, No. 22. (1 December 2009), pp. 7360-7367. by David G. Dineen, Andreas Wilm, Padraig Cunningham, Desmond G. Higgins posted to tss promoter_prediction promoter bioinfo by tonamswish on 2009-11-17 14:06:33 as along with 3 people maximilianh Fernando_FF polivares
	Intravenous Immunoglobulin in Children with Streptococcal Toxic Shock Syndrome. [My Copy] Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, Vol. 0, No. 0. (29 September 2009), pp. 000-000. by Samir S. Shah, Matthew Hall, Raj Srivastava, Anupama Subramony, James E. Levin posted to tss ivig by Amazoness on 2009-10-07 05:09:29 as
	An intragenic MEF2-dependent enhancer directs muscle-specific expression of microRNAs 1 and 133 [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (26 December 2007), pp. 20844-20849. by Ning Liu, Andrew H. Williams, Yuri Kim, et al.John McAnally, Svetlana Bezprozvannaya, Lillian B. Sutherland, James A. Richardson, Rhonda Bassel-Duby, Eric N. Olson posted to tss tf muscle mir-133 mir-1 microrna mef2 enhancer by tonamswish to the group microRNA on 2009-10-05 19:24:12 as along with 3 people maximilianh maralena bootsy
	Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding [My Copy] Genome Research, Vol. 18, No. 12. (3 December 2008), pp. 1906-1917. by A. Gordon Robertson, Mikhail Bilenky, Angela Tam, et al.Yongjun Zhao, Thomas Zeng, Nina Thiessen, Timothee Cezard, Anthony P. Fejes, Elizabeth D. Wederell, Rebecca Cullum, Ghia Euskirchen, Martin Krzywinski, Inanc Birol, Michael Snyder, Pamela A. Hoodless, Martin Hirst, Marco A. Marra, Steven J. M. Jones posted to tss switchgear histone_modification histone h3k4me3 h3k4me2 h3k4me1 by tonamswish on 2009-10-05 18:48:22 as along with 8 people humburg gdb ewilban1 natstreet raylim maximilianh jernst cpreviti
	MicroRNA: basic mechanisms and transcriptional regulatory networks for cell fate determination [My Copy] Cardiovasc Res, Vol. 79, No. 4. (1 September 2008), pp. 553-561. by Francesco Fazi, Clara Nervi posted to tss tf review microrna by tonamswish to the group microRNA on 2009-10-05 18:34:44 as
	Genomic analysis of human microRNA transcripts [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 45. (6 November 2007), pp. 17719-17724. by Harpreet K. Saini, Sam Griffiths-Jones, Anton J. Enright posted to tss switchgear microrna eponine bioinfo by tonamswish on 2009-10-05 18:32:17 as along with 18 people and 1 group danaiancu daforerog druvus heliopais jfr guhjy tmmurali dchughes AbnerCYH ealloza bootsy lp2 cabbagezs maximilianh RedmondSmyth gracio maralena tolot27 microRNA
	MicroRNA Discovery and Profiling in Human Embryonic Stem Cells by Deep Sequencing of Small RNA Libraries [My Copy] Stem Cells, Vol. 26, No. 10. (1 October 2008), pp. 2496-2505. by Merav Bar, Stacia K. Wyman, Brian R. Fritz, et al.Junlin Qi, Kavita S. Garg, Rachael K. Parkin, Evan M. Kroh, Ausra Bendoraite, Patrick S. Mitchell, Angelique M. Nelson, Walter L. Ruzzo, Carol Ware, Jerald P. Radich, Robert Gentleman, Hannele Ruohola-Baker, Muneesh Tewari posted to tss tf stem microrna eponine embryonic_stem_cells deep_sequencing by tonamswish on 2009-09-15 14:28:02 as along with 5 people and 1 group heliopais ealloza valeriehilgers myzhang inesdesantiago microRNA
	Tiny RNAs associated with transcription start sites in animals. [My Copy] Nature genetics, Vol. 41, No. 5. (19 May 2009), pp. 572-578. by Ryan J. Taft, Evgeny A. Glazov, Nicole Cloonan, et al.Cas Simons, Stuart Stephen, Geoffrey J. Faulkner, Timo Lassmann, Alistair R. Forrest, Sean M. Grimmond, Kate Schroder, Katharine Irvine, Takahiro Arakawa, Mari Nakamura, Atsutaka Kubosaki, Kengo Hayashida, Chika Kawazu, Mitsuyoshi Murata, Hiromi Nishiyori, Shiro Fukuda, Jun Kawai, Carsten O. Daub, David A. Hume, Harukazu Suzuki, Valerio Orlando, Piero Carninci, Yoshihide Hayashizaki, John S. Mattick posted to ncrna tss by guhjy on 2009-07-26 08:58:36 as along with 15 people hzoltan inesdesantiago jfr gdb xingxu fpattyn galka8_diploma tonamswish antonkratz mtagaya fenghezi ilyashl jbhiatt TRHvidsten natstreet
	RBF-TSS: identification of transcription start site in human using radial basis functions network and oligonucleotide positional frequencies. [My Copy] PloS one, Vol. 4, No. 3. (2009) by Rami N. Mahdi, Eric C. Rouchka posted to software tss by guhjy on 2009-07-26 08:47:08 as
	Massive transcriptional start site analysis of human genes in hypoxia cells. [My Copy] Nucleic acids research, Vol. 37, No. 7. (1 April 2009), pp. 2249-2263. by Katsuya Tsuchihara, Yutaka Suzuki, Hiroyuki Wakaguri, et al.Takuma Irie, Kousuke Tanimoto, Shin-ichi Hashimoto, Kouji Matsushima, Junko Mizushima-Sugano, Riu Yamashita, Kenta Nakai, David Bentley, Hiroyasu Esumi, Sumio Sugano posted to cage cost good hypoxia tss by guhjy on 2009-07-26 05:46:31 as along with 1 person nuin
	High-Resolution Analysis of the 5′-End Transcriptome Using a Next Generation DNA Sequencer [My Copy] PLoS ONE, Vol. 4, No. 1. (1 January 2009), e4108. by Shin-ichi Hashimoto, Wei Qu, Budrul Ahsan, et al.Katsumi Ogoshi, Atsushi Sasaki, Yoichiro Nakatani, Yongjun Lee, Masako Ogawa, Akio Ametani, Yutaka Suzuki, Sumio Sugano, Clarence C. Lee, Robert C. Nutter, Shinichi Morishita, Kouji Matsushima posted to rna-seq sage tss seq by guhjy on 2009-07-26 05:41:46 as along with 8 people and 1 group jwfoley tprpip poschm jfr jasontsai GustavoLacerda Cortel stajich Mycology
	Nucleosome organization in the Drosophila genome [My Copy] Nature, Vol. 453, No. 7193. (13 April 2008), pp. 358-362. by Travis N. Mavrich, Cizhong Jiang, Ilya P. Ioshikhes, et al.Xiaoyong Li, Bryan J. Venters, Sara J. Zanton, Lynn P. Tomsho, Ji Qi, Robert L. Glaser, Stephan C. Schuster, David S. Gilmour, Istvan Albert, B. Franklin Pugh posted to histone histone_modification nucleosome tf tss by tonamswish on 2009-07-23 15:37:41 as along with 7 people bpcusack taroleo nklee djkt megraw emptyhb yoonk
	Motif composition, conservation and condition-specificity of single and alternative transcription start sites in the Drosophila genome [My Copy] Genome Biology, Vol. 10, No. 7. (2009), R73. by Elizabeth Rach, Hsiang Y. Yuan, William Majoros, Pavel Tomancak, Uwe Ohler posted to tss by maren on 2009-07-21 00:21:37 as along with 4 people and 2 groups operon ppgardne leemond31 dandaman Journal picks SIMR bioinformatics
	Identification of plant promoter constituents by analysis of local distribution of short sequences [My Copy] BMC Genomics, Vol. 8, No. 1. (08 March 2007), 67. by Yoshiharu Yamamoto, Hiroyuki Ichida, Minami Matsui, et al.Junichi Obokata, Tetsuya Sakurai, Masakazu Satou, Motoaki Seki, Kazuo Shinozaki, Tomoko Abe posted to promoter_analysis tss by dandaman on 2009-07-13 14:11:48 as along with 6 people and 1 group xwbcn kengg saru byy Jporci natstreet Plantandetc
	Evolutionary turnover of mammalian transcription start sites. [My Copy] Genome Res (10 May 2006) by Martin C C. Frith, Jasmina Ponjavic, David Fredman, et al.Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayshizaki, Albin Sandelin posted to evolution tss by galka8_diploma on 2009-06-29 14:18:47 as along with 5 people and 3 groups dpollard cmm jsnoddy cisevol gjuggler EisenLab FAB-lab cis-regulatory-evolution
	A transcription factor affinity-based code for mammalian transcription initiation [My Copy] Genome Research, Vol. 19, No. 4. (13 April 2009), pp. 644-656. by Molly Megraw, Fernando Pereira, Shane T. Jensen, Uwe Ohler, Artemis G. Hatzigeorgiou posted to microrna tf tss by tonamswish to the group microRNA on 2009-06-04 19:01:41 as along with 9 people heliopais guhjy rpatward siebert biozhang2001 absterga jbhiatt samgj daforerog
	High-resolution human core-promoter prediction with CoreBoost_HM. [My Copy] Genome research, Vol. 19, No. 2. (7 February 2009), pp. 266-275. by Xiaowo Wang, Zhenyu Xuan, Xiaoyue Zhao, Yanda Li, Michael Q. Zhang posted to tss tool promoter microrna histone_modification histone chip-seq bioinfo by tonamswish on 2009-05-28 06:23:38 as along with 6 people and 1 group guhjy megraw rpatward pengchy abizar maximilianh microRNA
	Computational detection and location of transcription start sites in mammalian genomic DNA. [My Copy] Genome research, Vol. 12, No. 3. (1 March 2002), pp. 458-461. by T. A. Down, T. J. Hubbard posted to bioinfo mrna tool tss by tonamswish on 2009-05-27 23:14:00 as along with 4 people timhubbard smiddha olympos kmdaily
	From transcription start site to cell biology. [My Copy] Genome biology, Vol. 10, No. 4. (20 April 2009), 217. by P. Kapranov posted to ncrna tss by samgj on 2009-05-13 09:42:50 as along with 4 people guhjy xingxu megraw reyez
	Gram-positive toxic shock syndromes [My Copy] The Lancet Infectious Diseases, Vol. 9, No. 5. (May 2009), pp. 281-290. by Emma Lappin, Andrew J. Ferguson posted to tss by guhjy on 2009-04-24 03:12:57 as along with 1 person Amazoness
	Divergent transcription from active promoters. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5909. (19 December 2008), pp. 1849-1851. by Amy C. Seila, J. Mauro Calabrese, Stuart S. Levine, et al.Gene W. Yeo, Peter B. Rahl, Ryan A. Flynn, Richard A. Young, Phillip A. Sharp posted to h3k4me3 h3k79me3 pol2 promoter transcription tss by tonamswish on 2009-04-01 18:39:34 as along with 16 people guhjy gdb fenghezi emptyhb caseybrown siebert sebastien_vigneau inesdesantiago djkt jjray strands Glires lp2 sandersl diaz0058 jbhiatt
	Biological function of unannotated transcription during the early development of Drosophila melanogaster [My Copy] Nature Genetics, Vol. 38, No. 10. (03 September 2006), pp. 1151-1158. by Robert J. Manak, Sujit Dike, Victor Sementchenko, et al.Philipp Kapranov, Frederic Biemar, Jeff Long, Jill Cheng, Ian Bell, Srinka Ghosh, Antonio Piccolboni, Thomas R. Gingeras posted to drosophila tss by daveGerrard to the group BergmanLab on 2009-03-26 17:09:55 as along with 11 people and 6 groups roys ThomasDOtto inesdesantiago GeeSharpMinor emptyhb dpollard neveaire djkt wrowell Stew xingxu Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience Cline_lab
	The correlations of the function and positional distribution of the cis-elements CArG around the TSS in the genes of Mus musculus. [My Copy] Genome / National Research Council Canada = Génome / Conseil national de recherches Canada, Vol. 52, No. 3. (March 2009), pp. 217-221. by X. Shen, B. Walsh, J. J. Li, H. X. Pang, W. J. Wang, S. H. Tao posted to carg mouse srf tss by idonaldson on 2009-03-02 09:40:24 as
	Chemical composition of suspended sediments in World Rivers: New insights from a new database [My Copy] Science of The Total Environment, Vol. 407, No. 2. (01 January 2009), pp. 853-868. by J. Viers, B. Dupre, J. Gaillardet posted to dataset geochemistry global major_ions particulates rivers suspended_sediments trace_metals tss weathering by emayorga on 2009-02-11 23:44:02 as along with 1 person hiranzani
	Tracking the inorganic suspended solids through biological treatment units of wastewater treatment plants [My Copy] Water Research, Vol. 40, No. 19. (November 2006), pp. 3587-3595. by G. Ekama, M. Wentzel, S. Sotemann posted to fate_tss plant-wide tss by Pascalichouchou on 2009-01-27 19:06:28 as
	Interception of Small Particles by Flocculent Structures, Sessile Ciliates, and the Basic Layer of a Wastewater Biofilm [My Copy] Appl. Environ. Microbiol., Vol. 67, No. 9. (1 September 2001), pp. 4286-4292. by Heinrich Eisenmann, Ioanna Letsiou, Anette Feuchtinger, et al.Wolfgang Beisker, Ernst Mannweiler, Peter Hutzler, Patrik Arnz posted to biofiltration fate_tss tss by Pascalichouchou on 2009-01-26 16:06:23 as
	Backwash Based Methodology for the Estimation of Solids Retention Time in Biological Aerated Filter [My Copy] Environmental Technology, Vol. 27, No. 7. (2006), pp. 777-787. by Y. W. Lee, J. Chung, Y. D. Jeong, H. Shim, M. H. Kim posted to biofiltration methodology retention_time tss by Pascalichouchou on 2009-01-26 16:04:01 as
	RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters [My Copy] Science, Vol. 322, No. 5909. (19 December 2008), pp. 1851-1854. by Pascal Preker, Jesper Nielsen, Susanne Kammler, et al.Soren Lykke-Andersen, Marianne S. Christensen, Christophe K. Mapendano, Mikkel H. Schierup, Torben H. Jensen posted to antisense exosome pausing promoter prompt sense transcription tss by sebastien_vigneau on 2009-01-08 21:27:39 as along with 10 people and 1 group inesdesantiago bartjacobse gdb bertelsen caseybrown lflorez djkt strands diaz0058 jbhiatt 4th_floor_JC
	Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters [My Copy] Science, Vol. 322, No. 5909. (19 December 2008), pp. 1845-1848. by Leighton J. Core, Joshua J. Waterfall, John T. Lis posted to gro-seq pausing polii polymerase promoter transcription tss by sebastien_vigneau on 2009-01-08 21:24:56 as along with 13 people and 1 group hagechouchin443 gdb caseybrown bpcusack inesdesantiago skoch3 djkt strands Glires lp2 sandersl diaz0058 jbhiatt Koch_Lab
	Genomic overview of mRNA 5'-leader trans-splicing in the ascidian Ciona intestinalis. [My Copy] Nucleic acids research, Vol. 34, No. 11. (2006), pp. 3378-3388. by Y. Satou, M. Hamaguchi, K. Takeuchi, K. E. Hastings, N. Satoh posted to ascidian trans-splicing tss by Glires on 2008-12-25 02:41:17 as along with 1 person and 1 group Auger Dead 60's
	Retrotransposition as a Source of New Promoters. [My Copy] Molecular Biology and Evolution, Vol. 25, No. 6. (25 March 2008), pp. 1231-1238. by Kohji Okamura, Kenta Nakai posted to alternative evolution genome kohji promoter retrotransposition transcription tss by Glires on 2008-12-04 08:11:00 as along with 4 people and 1 group rschulz cisevol clearbluespring inesdesantiago cis-regulatory-evolution
	Partial Least Squares local calibration of a UV-visible spectrometer used for in situ measurements of COD and TSS concentrations in urban drainage systems. [My Copy] Water science and technology : a journal of the International Association on Water Pollution Research, Vol. 57, No. 4. (2008), pp. 581-588. by A. Torres, J. L. Bertrand-Krajewski posted to cod spectrometry tss uv by Pascalichouchou on 2008-12-02 17:34:15 as
	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. [My Copy] Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816. by ENCODE Project Consortium, Ewan Birney, John A. Stamatoyannopoulos, et al.Anindya Dutta, Roderic Guigó, Thomas R. Gingeras, Elliott H. Margulies, Zhiping Weng, Michael Snyder, Emmanouil T. Dermitzakis, Robert E. Thurman, Michael S. Kuehn, Christopher M. Taylor, Shane Neph, Christoph M. Koch, Saurabh Asthana, Ankit Malhotra, Ivan Adzhubei, Jason A. Greenbaum, Robert M. Andrews, Paul Flicek, Patrick J. Boyle, Hua Cao, Nigel P. Carter, Gayle K. Clelland, Sean Davis, Nathan Day, Pawandeep Dhami, Shane C. Dillon, Michael O. Dorschner, Heike Fiegler, Paul G. Giresi, Jeff Goldy, Michael Hawrylycz, Andrew Haydock, Richard Humbert, Keith D. James, Brett E. Johnson, Ericka M. Johnson, Tristan T. Frum, Elizabeth R. Rosenzweig, Neerja Karnani, Kirsten Lee, Gregory C. Lefebvre, Patrick A. Navas, Fidencio Neri, Stephen C. Parker, Peter J. Sabo, Richard Sandstrom, Anthony Shafer, David Vetrie, Molly Weaver, Sarah Wilcox, Man Yu, Francis S. Collins, Job Dekker, Jason D. Lieb, Thomas D. Tullius, Gregory E. Crawford, Shamil Sunyaev, William S. Noble, Ian Dunham, France Denoeud, Alexandre Reymond, Philipp Kapranov, Joel Rozowsky, Deyou Zheng, Robert Castelo, Adam Frankish, Jennifer Harrow, Srinka Ghosh, Albin Sandelin, Ivo L. Hofacker, Robert Baertsch, Damian Keefe, Sujit Dike, Jill Cheng, Heather A. Hirsch, Edward A. Sekinger, Julien Lagarde, Josep F. Abril, Atif Shahab, Christoph Flamm, Claudia Fried, Jörg Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Missal, Andrea Tanzer, Stefan Washietl, Jan Korbel, Olof Emanuelsson, Jakob S. Pedersen, Nancy Holroyd, Ruth Taylor, David Swarbreck, Nicholas Matthews, Mark C. Dickson, Daryl J. Thomas, Matthew T. Weirauch, James Gilbert, Jorg Drenkow, Ian Bell, XiaoDong Zhao, K. G. Srinivasan, Wing-Kin K. Sung, Hong Sain S. Ooi, Kuo Ping P. Chiu, Sylvain Foissac, Tyler Alioto, Michael Brent, Lior Pachter, Michael L. Tress, Alfonso Valencia, Siew Woh W. Choo, Chiou Yu Y. Choo, Catherine Ucla, Caroline Manzano, Carine Wyss, Evelyn Cheung, Taane G. Clark, James B. Brown, Madhavan Ganesh, Sandeep Patel, Hari Tammana, Jacqueline Chrast, Charlotte N. Henrichsen, Chikatoshi Kai, Jun Kawai, Ugrappa Nagalakshmi, Jiaqian Wu, Zheng Lian, Jin Lian, Peter Newburger, Xueqing Zhang, Peter Bickel, John S. Mattick, Piero Carninci, Yoshihide Hayashizaki, Sherman Weissman, Tim Hubbard, Richard M. Myers, Jane Rogers, Peter F. Stadler, Todd M. Lowe, Chia-Lin L. Wei, Yijun Ruan, Kevin Struhl, Mark Gerstein, Stylianos E. Antonarakis, Yutao Fu, Eric D. Green, Ulaş Karaöz, Adam Siepel, James Taylor, Laura A. Liefer, Kris A. Wetterstrand, Peter J. Good, Elise A. Feingold, Mark S. Guyer, Gregory M. Cooper, George Asimenos, Colin N. Dewey, Minmei Hou, Sergey Nikolaev, Juan I. Montoya-Burgos, Ari Löytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, Haiyan Huang, Nancy R. Zhang, Ian Holmes, James C. Mullikin, Abel Ureta-Vidal, Benedict Paten, Michael Seringhaus, Deanna Church, Kate Rosenbloom, W. James Kent, Eric A. Stone, NISC Comparative Sequencing Program, Baylor College of Medicine Human Genome Sequencing Center, Washington University Genome Sequencing Center, Broad Institute, Children's Hospital Oakland Research Institute, Serafim Batzoglou, Nick Goldman, Ross C. Hardison, David Haussler, Webb Miller, Arend Sidow, Nathan D. Trinklein, Zhengdong D. Zhang, Leah Barrera, Rhona Stuart, David C. King, Adam Ameur, Stefan Enroth, Mark C. Bieda, Jonghwan Kim, Akshay A. Bhinge, Nan Jiang, Jun Liu, Fei Yao, Vinsensius B. Vega, Charlie W. Lee, Patrick Ng, Atif Shahab, Annie Yang, Zarmik Moqtaderi, Zhou Zhu, Xiaoqin Xu, Sharon Squazzo, Matthew J. Oberley, David Inman, Michael A. Singer, Todd A. Richmond, Kyle J. Munn, Alvaro Rada-Iglesias, Ola Wallerman, Jan Komorowski, Joanna C. Fowler, Phillippe Couttet, Alexander W. Bruce, Oliver M. Dovey, Peter D. Ellis, Cordelia F. Langford, David A. Nix, Ghia Euskirchen, Stephen Hartman, Alexander E. Urban, Peter Kraus, Sara Van Calcar, Nate Heintzman, Tae Hoon H. Kim, Kun Wang, Chunxu Qu, Gary Hon, Rosa Luna, Christopher K. Glass, M. Geoff Rosenfeld, Shelley Force F. Aldred, Sara J. Cooper, Anason Halees, Jane M. Lin, Hennady P. Shulha, Xiaoling Zhang, Mousheng Xu, Jaafar N. Haidar, Yong Yu, Yijun Ruan, Vishwanath R. Iyer, Roland D. Green, Claes Wadelius, Peggy J. Farnham, Bing Ren, Rachel A. Harte, Angie S. Hinrichs, Heather Trumbower, Hiram Clawson, Jennifer Hillman-Jackson, Ann S. Zweig, Kayla Smith, Archana Thakkapallayil, Galt Barber, Robert M. Kuhn, Donna Karolchik, Lluis Armengol, Christine P. Bird, Paul I. de Bakker, Andrew D. Kern, Nuria Lopez-Bigas, Joel D. Martin, Barbara E. Stranger, Abigail Woodroffe, Eugene Davydov, Antigone Dimas, Eduardo Eyras, Ingileif B. Hallgrímsdóttir, Julian Huppert, Michael C. Zody, Gonçalo R. Abecasis, Xavier Estivill, Gerard G. Bouffard, Xiaobin Guan, Nancy F. Hansen, Jacquelyn R. Idol, Valerie V. Maduro, Baishali Maskeri, Jennifer C. McDowell, Morgan Park, Pamela J. Thomas, Alice C. Young, Robert W. Blakesley, Donna M. Muzny, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, Robert Fulton, Elaine R. Mardis, Richard K. Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin Lindblad-Toh, Eric S. Lander, Maxim Koriabine, Mikhail Nefedov, Kazutoyo Osoegawa, Yuko Yoshinaga, Baoli Zhu, Pieter J. de Jong posted to encode tss by myrtilus on 2008-11-10 14:37:10 as along with 25 people and 2 groups bartjacobse daveGerrard daforerog isimpson sharpton jessopher timhubbard scjparker polivares coela ilyashl aprasad daed waszak guhjy jfr chad_davis kengg olympos blobbybirdman shikin fpattyn yevishere elfar eskay Bioinformatics UH - Computational Biology
	CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by H. Kawaji, T. Kasukawa, S. Fukuda, et al.S. Katayama, C. Kai, J. Kawai, P. Carninci, Y. Hayashizaki posted to approaches bioinformatics carninci database methods ncrna review transcriptome tss by myrtilus on 2008-11-07 19:46:35 as along with 7 people bertelsen troels_marstrand olympos kkishore12 gjuggler xiaobeizhao guhjy
	A code for transcription initiation in mammalian genomes. [My Copy] Genome research, Vol. 18, No. 1. (21 January 2008), pp. 1-12. by M. C. Frith, E. Valen, A. Krogh, Y. Hayashizaki, P. Carninci, A. Sandelin posted to carninci frith megaarticle megareview tss by myrtilus on 2008-11-07 19:38:26 as along with 12 people megraw guhjy rpatward inesdesantiago dchughes cabbagezs maximilianh idonaldson oelemento gjuggler ohara gracio
	Dynamic usage of transcription start sites within core promoters [My Copy] Genome Biology, Vol. 7, No. 12. (12 December 2006), R118. by Hideya Kawaji, Martin Frith, Shintaro Katayama, et al.Albin Sandelin, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki posted to approaches carninci main megaarticle promoter tss by myrtilus on 2008-11-07 19:33:12 as along with 5 people and 1 group hagechouchin443 carelcad icases gjuggler xiaobeizhao TNT
	Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs. [My Copy] Genes & development, Vol. 15, No. 19. (1 October 2001), pp. 2515-2519. by J. E. Butler, J. T. Kadonaga posted to promoter tbp tfiid tss by myrtilus on 2008-11-07 19:27:50 as along with 2 people rpatward jochenG
	The new core promoter element XCPE1 (X Core Promoter Element 1) directs activator-, mediator-, and TATA-binding protein-dependent but TFIID-independent RNA polymerase II transcription from TATA-less promoters. [My Copy] Molecular and cellular biology, Vol. 27, No. 5. (March 2007), pp. 1844-1858. by Y. Tokusumi, Y. Ma, X. Song, R. H. Jacobson, S. Takada posted to promoter tfiid tss by myrtilus on 2008-11-07 19:26:35 as
	Comprehensive analysis of the base composition around the transcription start site in Metazoa [My Copy] BMC Genomics, Vol. 5, No. 1. (2004) by Stein Aerts, Gert Thijs, Michal Dabrowski, Yves Moreau, Bart De Moor posted to transcriptome tss by myrtilus on 2008-11-07 19:19:11 as along with 1 person RaquelSL
	Tagging mammalian transcription complexity [My Copy] Trends in Genetics, Vol. 22, No. 9. (September 2006), pp. 501-510. by P. Carninci posted to approaches bioinformatics carninci experimental ncrna review transcriptome tss by myrtilus on 2008-11-07 18:56:27 as along with 3 people and 2 groups guhjy dchughes gjuggler G4ID Genetics-of-Gambling
	Functional characterization of core promoter elements: the downstream core element is recognized by TAF1. [My Copy] Molecular and cellular biology, Vol. 25, No. 21. (November 2005), pp. 9674-9686. by D. H. Lee, N. Gershenzon, M. Gupta, I. P. Ioshikhes, D. Reinberg, B. A. Lewis posted to ncrna promoter rnapolymerase tss by myrtilus on 2008-11-07 18:52:59 as along with 1 person megraw
	Positional distribution of human transcription factor binding sites. [My Copy] Nucleic acids research (25 October 2008) by Mark Koudritsky, Eytan Domany posted to distribution tfbs tss by idonaldson on 2008-11-03 09:11:41 as along with 10 people and 2 groups bsamal daforerog jfr jforman ghattem barriot fpattyn nklee maximilianh nuin SIMR bioinformatics BenosLab
	Constructing the landscape of the mammalian transcriptome. [My Copy] The Journal of experimental biology, Vol. 210, No. Pt 9. (May 2007), pp. 1497-1506. by P. Carninci posted to carninci ncrna transcriptome tss by myrtilus on 2008-11-02 21:25:44 as along with 2 people guhjy xingxu
	Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia. [My Copy] Genome research, Vol. 13, No. 6B. (June 2003), pp. 1273-1289. by P. Carninci, K. Waki, T. Shiraki, et al.H. Konno, K. Shibata, M. Itoh, K. Aizawa, T. Arakawa, Y. Ishii, D. Sasaki, H. Bono, S. Kondo, Y. Sugahara, R. Saito, N. Osato, S. Fukuda, K. Sato, A. Watahiki, T. Hirozane-Kishikawa, M. Nakamura, Y. Shibata, A. Yasunishi, N. Kikuchi, A. Yoshiki, M. Kusakabe, S. Gustincich, K. Beisel, W. Pavan, V. Aidinis, A. Nakagawara, W. A. Held, H. Iwata, T. Kono, H. Nakauchi, P. Lyons, C. Wells, D. A. Hume, M. Fagiolini, T. K. Hensch, M. Brinkmeier, S. Camper, J. Hirota, P. Mombaerts, M. Muramatsu, Y. Okazaki, J. Kawai, Y. Hayashizaki posted to mice tss by myrtilus on 2008-11-02 20:24:16 as along with 1 person guhjy
	Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 26. (23 December 2003), pp. 15776-15781. by T. Shiraki, S. Kondo, S. Katayama, et al.K. Waki, T. Kasukawa, H. Kawaji, R. Kodzius, A. Watahiki, M. Nakamura, T. Arakawa, S. Fukuda, D. Sasaki, A. Podhajska, M. Harbers, J. Kawai, P. Carninci, Y. Hayashizaki posted to cage secondary tss by myrtilus on 2008-11-02 20:23:29 as along with 8 people YukaH bertelsen setar troels_marstrand xiaobeizhao olympos gjuggler guhjy
	Mice and Men: Their Promoter Properties [My Copy] PLoS Genet, Vol. 2, No. 4. (28 April 2006), e54. by Vladimir B. Bajic, Sin L. Tan, Alan Christoffels, et al.Christian Schönbach, Leonard Lipovich, Liang Yang, Oliver Hofmann, Adele Kruger, Winston Hide, Chikatoshi Kai, Jun Kawai, David A. Hume, Piero Carninci, Yoshihide Hayashizaki posted to and comparing men mice promoter tss by myrtilus on 2008-11-02 20:18:45 as
	New problems in RNA polymerase II transcription initiation: matching the diversity of core promoters with a variety of promoter recognition factors. [My Copy] The Journal of biological chemistry, Vol. 282, No. 20. (18 May 2007), pp. 14685-14689. by F. Müller, M. A. Demény, L. Tora posted to articles main tss by myrtilus on 2008-11-02 20:11:08 as along with 1 person rpatward

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promoter	16
microrna	9
ncrna	9
tf	9
rivers	7
transcription	7
sediments	6
carninci	5
bioinfo	4
database	4
motif	4
review	4
transcriptome	4
approaches	3
cage	3
china	3
erosion	3
histone	3
histone_modification	3
pausing	3
seasonality	3
tool	3
amazon	2
anthropogenic	2
antisense	2
biofiltration	2
bioinformatics	2
carbon	2
changjiang	2
climate_change	2
core_promoter	2
drosophila	2
encode	2
enhancer	2
eponine	2
evolution	2
fate_tss	2
gro-seq	2
h3k4me3	2
huanghe	2
journalclub	2
landusechange	2
main	2
mef2	2
megaarticle	2
mice	2
mir-1	2
mir-133	2
mirna	2
muscle	2
pol2	2
polii	2
polymerase	2
prediction	2
promoters	2
reservoirs	2
sedimentation	2
sense	2
snp	2
switchgear	2
tfbs	2
tfiid	2
time_series	2
tirna	2
weathering	2
yellow_river	2
andes	1
carg	1
comparing	1
dataset	1
deep_sequencing	1
doc	1
europe	1
export	1
geochemistry	1
global	1
h3k4me1	1
h3k79me2	1
ivig	1
methods	1
myc	1
newzealand	1
nutrients	1
organicmatter	1
paleo	1
particulates	1
phosphorus	1
plant-wide	1
saureus	1
seq	1
small_rna	1
srf	1
staphylococcus	1
taf1	1
tbp	1
tectonics	1
tiny_rna	1
trans-splicing	1
watersheds	1
yangtze	1

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