Tag ultraconserved [29 articles] Export Sort

Recent papers classified by the tag ultraconserved.

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	Algorithms for locating extremely conserved elements in multiple sequence alignments. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (18 December 2009), 432. by Huei-Hun H. Tseng, Martin Tompa posted to ultraconserved by maximilianh on 2009-12-25 02:01:24 as along with 3 people and 1 group cory_ko operon druvus ronbun_2009au
	Short ultraconserved promoter regions delineate a class of preferentially expressed alternatively spliced transcripts. [My Copy] Genomics, Vol. 94, No. 5. (04 November 2009), pp. 308-316. by Christian Rödelsperger, Sebastian Köhler, Marcel H. Schulz, Thomas Manke, Sebastian Bauer, Peter N. Robinson posted to ultraconserved promoter expression enhancer conserved by roedelsberg on 2009-12-08 14:33:14 as along with 1 person daforerog
	Dispensability of Mammalian DNA. [My Copy] Genome research, Vol. 18, No. 11. (November 2008), pp. 1743-1751. by C. Mclean, G. Bejerano posted to cns evolution model non-coding selection ultraconserved by aprasad on 2009-06-20 21:55:51 as along with 2 people gjuggler alhufton
	Deletion of Ultraconserved Elements Yields Viable Mice [My Copy] PLoS Biol, Vol. 5, No. 9. (4 September 2007), e234. by Nadav Ahituv, Yiwen Zhu, Axel Visel, et al.Amy Holt, Veena Afzal, Len A. Pennacchio, Edward M. Rubin posted to cns functional mouse mutation selection ultraconserved by aprasad on 2009-06-20 21:53:52 as along with 10 people and 3 groups galka8_diploma balicea dchughes cwbrown djkt lp2 cabbagezs Stew gjuggler bpcusack EisenLab G4ID Genetics-of-Gambling
	Human Genome Ultraconserved Elements Are Ultraselected [My Copy] Science, Vol. 317, No. 5840. (17 August 2007), 915. by Sol Katzman, Andrew D. Kern, Gill Bejerano, et al.Ginger Fewell, Lucinda Fulton, Richard K. Wilson, Sofie R. Salama, David Haussler posted to ultraconserved by ramiro2k on 2009-05-07 18:43:50 as along with 12 people and 1 group clearbluespring galka8_diploma aprasad balicea djkt lp2 cabbagezs cisevol Minty fpattyn gjuggler bpcusack cis-regulatory-evolution
	Genomic regions with distinct genomic distance conservation in vertebrate genomes. [My Copy] BMC genomics, Vol. 10, No. 1. (27 March 2009) by H. Sun, G. Skogerbø, X. Zheng, W. Liu, Y. Li posted to cns genetic_distance indel ultraconserved by aprasad on 2009-04-29 14:28:10 as along with 3 people and 1 group JustinCrocker cisevol Schmidtc cis-regulatory-evolution
	Conserved elements within open reading frames of mammalian Hox genes. [My Copy] Journal of biology, Vol. 8, No. 2. (06 February 2009), 17. by Joost M. Woltering, Denis Duboule posted to ultraconserved by jm12 on 2009-03-23 14:44:47 as along with 2 people aprasad maximilianh
	Ultraconserved coding regions outside the homeobox of mammalian Hox genes [My Copy] BMC Evolutionary Biology, Vol. 8 (24 September 2008), 260. by Zhenguo Lin, Hong Ma, Masatoshi Nei posted to ultraconserved by jm12 on 2009-03-16 10:41:55 as along with 2 people agustinarce maximilianh
	A predictive model for identifying mini-regulatory modules in the mouse genome. [My Copy] Bioinformatics (Oxford, England) (3 December 2008) by Mahesh Yaragatti, Ted Sandler, Lyle Ungar posted to enhancerprediction ultraconserved by maximilianh on 2008-12-06 00:08:04 as along with 6 people TRHvidsten cassj djkt idonaldson druvus operon
	Large number of ultraconserved elements were already present in the jawed vertebrate ancestor. [My Copy] Molecular biology and evolution (3 December 2008) by Jianli Wang, Alison P P. Lee, Rimantas Kodzius, Sydney Brenner, Byrappa Venkatesh posted to ultraconserved by maximilianh on 2008-12-05 13:59:37 as along with 2 people jmeppley djkt
	Ultraconserved Elements: Analyses of Dosage Sensitivity, Motifs, and Boundaries. [My Copy] Genetics (28 October 2008) by Charleston W K W. Chiang, Adnan Derti, Daniel Schwartz, Michael F F. Chou, Joel N N. Hirschhorn, Chao-Ting T. Wu posted to elements ultraconserved by treangen on 2008-11-22 21:31:52 as along with 2 people djkt maximilianh
	Identification and characterization of new long conserved noncoding sequences in vertebrates. [My Copy] Mammalian genome : official journal of the International Mammalian Genome Society (18 November 2008) by Yoshiyuki Sakuraba, Toru Kimura, Hiroshi Masuya, et al.Hideki Noguchi, Hideki Sezutsu, K R. Takahasi, Atsushi Toyoda, Ryutaro Fukumura, Takuya Murata, Yoshiyuki Sakaki, Masayuki Yamamura, Shigeharu Wakana, Tetsuo Noda, Toshihiko Shiroishi, Yoichi Gondo posted to dna genome noncoding ultraconserved vertebrates by treangen on 2008-11-22 21:29:48 as along with 3 people operon maximilianh xianjun
	Ultraconserved Elements in the Human Genome [My Copy] Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325. by Gill Bejerano, Michael Pheasant, Igor Makunin, et al.Stuart Stephen, W. James Kent, John S. Mattick, David Haussler posted to elements genome human ultraconserved by treangen on 2008-11-22 21:28:43 as along with 18 people and 5 groups clearbluespring daforerog ilyashl Ema karbak barry ujh alexisgallagher bpb aprasad balicea dchughes pradiptaray djkt sujaikumar blobbybirdman cisevol fpattyn structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling cis-regulatory-evolution
	Widespread ultraconservation divergence in primates. [My Copy] Molecular biology and evolution, Vol. 25, No. 8. (August 2008), pp. 1668-1676. by I. Ovcharenko posted to ultraconserved by maximilianh on 2008-09-29 14:32:37 as
	Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. [My Copy] Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050. by A. Siepel, G. Bejerano, J. S. Pedersen, et al.A. S. Hinrichs, M. Hou, K. Rosenbloom, H. Clawson, J. Spieth, L. W. Hillier, S. Richards, G. M. Weinstock, R. K. Wilson, R. A. Gibbs, W. J. Kent, W. Miller, D. Haussler posted to evolution insect selection ultraconserved vertebrate worm yeast by pradiptaray on 2008-07-01 02:09:00 as along with 20 people and 4 groups thegoose2 farhat skembel alessandroparini tharris bpb aprasad balajis eckart_bindewald indigoviolet brant adepace djkt olympos sujaikumar Stew cisevol dmc elfar AlexanderPico C. elegans / WormBase EisenLab cis-regulatory-evolution ConklinLab
	Highly similar noncoding genomic DNA sequences: ultraconserved, or merely widespread? [My Copy] Genome / National Research Council Canada = Génome / Conseil national de recherches Canada, Vol. 51, No. 5. (May 2008), pp. 396-397. by D. A. Hickey posted to ultraconserved whyconserved by maximilianh on 2008-04-30 13:01:09 as along with 1 person jfr
	Mammalian ultraconserved elements are strongly depleted among segmental duplications and copy number variants [My Copy] Nature Genetics, Vol. 38, No. 10. (24 September 2006), pp. 1216-1220. by Adnan Derti, Frederick P. Roth, George M. Church, C-Ting Wu posted to copy duplication element human number segmental ultraconserved variant by fpattyn on 2008-02-28 14:04:57 as along with 2 people gjuggler bpcusack
	Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes. [My Copy] BMC Genomics, Vol. 5, No. 1. (2004) by A. Sandelin, P. Bailey, S. Bruce, et al.P. G. Engström, J. M. Klos, W. W. Wasserman, J. Ericson, B. Lenhard posted to algorithm element non-coding ultraconserved by fpattyn on 2008-02-28 13:58:52 as along with 1 person sujaikumar
	Multiple Organism Algorithm for Finding Ultraconserved Elements [My Copy] BMC Bioinformatics, Vol. 9 (11 January 2008), 15. by Scott Christley, Neil F. Lobo, Greg Madey posted to algorithm element ultraconserved by fpattyn on 2008-02-28 13:23:58 as along with 2 people and 1 group cisevol yoanjacquemin cis-regulatory-evolution
	Ultraconserved Regions Encoding ncRNAs Are Altered in Human Leukemias and Carcinomas. [My Copy] Cancer Cell, Vol. 12, No. 3. (September 2007), pp. 215-229. by G. A. Calin, C. G. Liu, M. Ferracin, et al.T. Hyslop, R. Spizzo, C. Sevignani, M. Fabbri, A. Cimmino, E. J. Lee, S. E. Wojcik, M. Shimizu, E. Tili, S. Rossi, C. Taccioli, F. Pichiorri, X. Liu, S. Zupo, V. Herlea, L. Gramantieri, G. Lanza, H. Alder, L. Rassenti, S. Volinia, T. D. Schmittgen, T. J. Kipps, M. Negrini, C. M. Croce posted to cancer ncrna t-ucr ucr ultraconserved by fpattyn on 2008-02-28 13:18:04 as along with 5 people and 1 group galka8_diploma pengchy jfr andersbj maximilianh microRNA
	Does radial nuclear organisation influence DNA damage? [My Copy] Chromosome Research, Vol. 13, No. 4. (June 2005), pp. 377-388. by Elodie Gazave, Philippe Gautier, Susan Gilchrist, Wendy Bickmore posted to tss ultraconserved by gjuggler on 2008-02-26 12:35:16 as
	A distal enhancer and an ultraconserved exon are derived from a novel retroposon [My Copy] Nature (16 April 2006) by Gill Bejerano, Craig B. Lowe, Nadav Ahituv, et al.Bryan King, Adam Siepel, Sofie R. Salama, Edward M. Rubin, James W. Kent, David Haussler posted to ultraconserved by gjuggler on 2008-02-22 14:58:15 as along with 5 people and 6 groups marcius dchughes nickluscombe djkt cisevol G4ID EBI-regulation BioinfoCIPF SGU-CIPF Genetics-of-Gambling cis-regulatory-evolution
	In vivo enhancer analysis of human conserved non-coding sequences. [My Copy] Nature, Vol. 444, No. 7118. (23 November 2006), pp. 499-502. by Len A. Pennacchio, Nadav Ahituv, Alan M. Moses, et al.Shyam Prabhakar, Marcelo A. Nobrega, Malak Shoukry, Simon Minovitsky, Inna Dubchak, Amy Holt, Keith D. Lewis, Ingrid P. Frick, Jennifer Akiyama, Sarah De Val, Veena Afzal, Brian L. Black, Olivier Couronne, Michael B. Eisen, Axel Visel, Edward M. Rubin posted to ultraconserved by gjuggler on 2008-02-22 14:52:00 as along with 6 people provero maximilianh_otx cisstem cckan maximilianh heliopais
	A short ultraconserved sequence drives transcription from an alternate FBN1 promoter. [My Copy] Int J Biochem Cell Biol (2 October 2007) by Gao Guo, Sebastian Bauer, Jochen Hecht, Marcel H. H. Schulz, Andreas Busche, Peter N. N. Robinson posted to ultraconserved by gjuggler on 2008-02-22 14:50:13 as along with 1 person maximilianh
	28-Way vertebrate alignment and conservation track in the UCSC Genome Browser [My Copy] Genome Res. (5 November 2007), gr.6761107. by Webb Miller, Kate Rosenbloom, Ross C. Hardison, et al.Minmei Hou, James Taylor, Brian Raney, Richard Burhans, David C. King, Robert Baertsch, Daniel Blankenberg, Kosakovsky, Anton Nekrutenko, Belinda Giardine, Robert S. Harris, Svitlana Tyekucheva, Mark Diekhans, Thomas H. Pringle, William J. Murphy, Arthur Lesk, George M. Weinstock, Kerstin L. Toh, Richard A. Gibbs, Eric S. Lander, Adam Siepel, David Haussler, James W. Kent posted to ultraconserved by gjuggler on 2008-02-22 14:30:21 as along with 11 people rschulz aprasad dchughes nklee maximilianh idonaldson fpattyn clearbluespring joavah AaronDarling guhjy
	Large-Scale Appearance of Ultraconserved Elements in Tetrapod Genomes and Slowdown of the Molecular Clock [My Copy] Mol Biol Evol, Vol. 25, No. 2. (1 February 2008), pp. 402-408. by Stuart Stephen, Michael Pheasant, Igor V. Makunin, John S. Mattick posted to ultraconserved by gjuggler on 2008-02-22 14:22:54 as along with 1 person djkt
	Ultraconservation identifies a small subset of extremely constrained developmental enhancers. [My Copy] Nat Genet (6 January 2008) by Axel Visel, Shyam Prabhakar, Jennifer A. A. Akiyama, et al.Malak Shoukry, Keith D. D. Lewis, Amy Holt, Ingrid P. Frick, Veena Afzal, Edward M. M. Rubin, Len A. A. Pennacchio posted to ultraconserved by gjuggler on 2008-02-22 14:22:44 as along with 6 people cisstem Stew maximilianh emptyhb bpcusack isimpson
	The strength of selection on ultraconserved elements in the human genome. [My Copy] Am J Hum Genet, Vol. 80, No. 4. (April 2007), pp. 692-704. by C. T. Chen, J. C. Wang, B. A. Cohen posted to ultraconserved by gjuggler on 2008-02-22 14:11:21 as along with 2 people and 1 group cisevol bpcusack cis-regulatory-evolution
	Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing [My Copy] Genome Research, Vol. 15, No. 6. (17 June 2005), pp. 800-808. by Evgeny A. Glazov, Michael Pheasant, Elizabeth A. McGraw, Gill Bejerano, John S. Mattick posted to drosophila insect mrna splicing ultraconserved by Stew on 2007-09-19 18:41:01 as along with 3 people and 1 group sujaikumar operon ujh EisenLab

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