APRegier's alignment [12 articles] Export

Recent papers added to APRegier's library classified by the tag alignment. You can also see everyone's alignment.

	Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements [My Copy] Genome Research, Vol. 14, No. 7. (July 2004), pp. 1394-1403. by Aaron C. E. Darling, Bob Mau, Frederick R. Blattner, Nicole T. Perna posted to alignment comparative multiple pf454-paper synteny tool by APRegier on 2009-08-07 19:48:46 as along with 13 people and 2 groups rneches foxpowa ArtemPankin hpaces Neeperando bcondon semrich operon catmat AaronDarling azazello mariakmejia druvus Khavkin's lab gatech-compgenomics
	SSAHA: a fast search method for large DNA databases. [My Copy] Genome research, Vol. 11, No. 10. (1 October 2001), pp. 1725-1729. by Z. Ning, A. J. Cox, J. C. Mullikin posted to alignment pf454-paper short-read by APRegier on 2009-07-22 20:26:02 as along with 17 people torfinnnome stharward adthrasher mattwa jmanning2k n00c jmcq natstreet druvus treangen umit mmartin timflutre bpb j3xucite lp2 dmc
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to alignment inversion-paper by APRegier on 2009-06-23 16:17:43 as along with 77 people and 6 groups VGreiff richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Versatile and open software for comparing large genomes. [My Copy] Genome Biol, Vol. 5, No. 2. (2004) by S. Kurtz, A. Phillippy, A. L. Delcher, et al.M. Smoot, M. Shumway, C. Antonescu, S. L. Salzberg posted to alignment by APRegier on 2009-06-03 22:23:50 as along with 9 people pachorip treangen natstreet druvus adelcher AaronDarling michC yoanjacquemin Neeperando
	Whole-genome sequencing and variant discovery in C. elegans. [My Copy] Nature methods, Vol. 5, No. 2. (20 February 2008), pp. 183-188. by LaDeana W. Hillier, Gabor T. Marth, Aaron R. Quinlan, et al.David Dooling, Ginger Fewell, Derek Barnett, Paul Fox, Jarret I. Glasscock, Matthew Hickenbotham, Weichun Huang, Vincent J. Magrini, Ryan J. Richt, Sacha N. Sander, Donald A. Stewart, Michael Stromberg, Eric F. Tsung, Todd Wylie, Tim Schedl, Richard K. Wilson, Elaine R. Mardis posted to alignment pf454-paper short-read snps by APRegier on 2009-06-03 20:53:19 as along with 14 people seninp Annab n00c thegoose2 druvus semrich AaronDarling usagi-kirin matthewsuderman inesdesantiago orzenil mdimon farhat tharris
	Alignment and Analysis of Closely Related Genomes [My Copy] Bioinformatics and Computational Biology In BICoB '09: Proceedings of the 1st International Conference on Bioinformatics and Computational Biology (2009), pp. 343-352. by Allison Regier, Michael Olson, Scott Emrich posted to alignment pf454-paper plasmodium by APRegier on 2009-06-03 20:36:45 as along with 1 person Neeperando
	ZOOM! Zillions of oligos mapped [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2431-2437. by Hao Lin, Zefeng Zhang, Michael Q. Zhang, Bin Ma, Ming Li posted to alignment short-read by APRegier on 2008-10-31 14:30:12 as along with 20 people hzoltan gbenson bozdagd adijr gdb n00c GeeSharpMinor inesdesantiago GustavoLacerda cthachuk guhjy abizar natstreet druvus caseybrown djkt wisdom_love umit Neeperando Stew
	Reconstructing contiguous regions of an ancestral genome [My Copy] Genome Res., Vol. 16, No. 12. (1 December 2006), pp. 1557-1565. by Jian Ma, Louxin Zhang, Bernard B. Suh, et al.Brian J. Raney, Richard C. Burhans, James W. Kent, Mathieu Blanchette, David Haussler, Webb Miller posted to alignment multiple by APRegier on 2008-10-23 16:57:09 as along with 2 people and 2 groups dchughes Neeperando G4ID Genetics-of-Gambling
	Aligning multiple genomic sequences with the threaded blockset aligner. [My Copy] Genome research, Vol. 14, No. 4. (April 2004), pp. 708-715. by Mathieu Blanchette, W. James Kent, Cathy Riemer, et al.Laura Elnitski, Arian F. Smit, Krishna M. Roskin, Robert Baertsch, Kate Rosenbloom, Hiram Clawson, Eric D. Green, David Haussler, Webb Miller posted to alignment multiple by APRegier on 2008-10-23 16:53:28 as along with 13 people and 1 group roys emptyhb nuin aprasad operon ujh indigoviolet csardas djkt yylin Neeperando maralena AlexanderPico EisenLab
	A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome [My Copy] Genome Biology, Vol. 8 (20 March 2007), R41. by Kerrin S. Small, Michael Brudno, Matthew M. Hill, Arend Sidow posted to alignment comparative lagan polymorphism scaffolding by APRegier on 2008-10-23 16:29:15 as along with 3 people dakelley adijr nhp
	Database indexing for production MegaBLAST searches. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008), pp. 1757-1764. by Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer posted to alignment by APRegier on 2008-08-09 17:23:58 as along with 5 people maria_hauser natstreet druvus jdelcampo Neeperando
	Segment-based multiple sequence alignment [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i187-192. by Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Doring, Cedric Notredame, Knut Reinert posted to alignment by APRegier on 2008-08-09 17:23:15 as along with 9 people nuin BioNica darian Md_2007 zwang Ema djkt aprasad groepl

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inversion-paper	35
structural	25
short-read	21
pf454-paper	18
human	16
assembly	16
inversions	15
anopheles	14
alignment	12
comparative	8
drosophila	8
polymorphism	8
plasmodium	7
variation	7
resequencing	7
population	6
evolution	6
snps	6
gene-family	5
copy-number	5
selection	5
genetics	4
network	4
speciation	4
2la	4
inference	4
multiple	4
recombination	3
454	3
quality	3
networks	3
hapmap	3
regulatory	3
tool	3
gaps	3
illumina	3
duplications	3
conserved	2
statistics	2
synteny	2
inversion	2
repeats	2
keepin-it-real	2
assembly-quality	2
structure	2
cancer	2
haplotype	2
plants	1
maq	1
transposons	1
lagan	1
review	1
scaffolding	1
multimodal	1
phylogenetics	1
visualization	1
identifiers	1
service	1
chromosomal	1
shotgun	1
coverage	1
expression	1
sequencing	1
mechanism	1
solid	1
mcmc	1
number	1
cgh	1
machine-learning	1
breakpoints	1
proteins	1
shrap	1
java	1
draft	1
copy	1
transcription	1
eqtl	1
mammals	1
celera	1
birds	1
short-reads	1
microarrays	1
web	1
disease	1

APRegier's alignment [12 articles] Export

APRegier's tags