APRegier's assembly [16 articles] Export

Recent papers added to APRegier's library classified by the tag assembly. You can also see everyone's assembly.

	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome Research, Vol. 19, No. 2. (3 February 2009), pp. 336-346. by Mark J. Chaisson, Dumitru Brinza, Pavel A. Pevzner posted to short-reads assembly by APRegier on 2009-09-02 18:17:53 as along with 17 people and 1 group n00c carlk jandot jonilaserson natstreet dakelley jessopher orzenil AaronDarling sphsmith jasontsai nmohelli jbhiatt druvus hpaces GustavoLacerda stajich Mycology
	Assisted assembly: how to improve a de novo genome assembly by using related species [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R88. by Sante Gnerre, Eric Lander, Kerstin L. Toh, David Jaffe posted to plasmodium mammals draft assembly-quality assembly by APRegier on 2009-09-02 16:52:15 as along with 19 people and 2 groups davidmam klo operon fstrozzi kiekyon torfinnnome dakelley jamselem err129 djkt darian thegoose danmaclean stajich natstreet neils druvus GustavoLacerda avilella Mycology Journal picks
	A fast hybrid short read fragment assembly algorithm [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2279-2280. by Bertil Schmidt, Ranjan Sinha, Bryan Beresford-Smith, Simon J. Puglisi posted to short-read assembly by APRegier on 2009-09-02 16:46:27 as along with 16 people and 2 groups torfinnnome hzoltan cthachuk orzenil GustavoLacerda dakelley katholt GeeSharpMinor dayjm djkt dswan pachorip natstreet druvus n00c jmeppley Bioinformatics Journal picks
	Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing [My Copy] J Comput Biol., Vol. 16, No. 7. (July 2009), pp. 897-908. by N. Nagarajan, M. Pop posted to short-read repeats assembly by APRegier on 2009-08-20 16:25:51 as
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to short-read illumina assembly by APRegier on 2009-08-20 15:43:42 as along with 23 people and 1 group ajsferreira n00c carlk jmanning2k pachorip jonilaserson operon thegoose2 natstreet AaronDarling mhz dakelley druvus stajich azazello hpaces tharris jwhitney iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor Mycology
	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research In Genome Research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to assembly illumina short-read by APRegier on 2009-08-07 22:03:46 as along with 42 people and 3 groups ajsferreira vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn druvus natstreet nmohelli stajich farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	Aggressive assembly of pyrosequencing reads with mates [My Copy] Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2818-2824. by Jason R. Miller, Arthur L. Delcher, Sergey Koren, et al.Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, Granger Sutton posted to 454 assembly celera pf454-paper by APRegier on 2009-08-07 21:43:16 as along with 17 people and 2 groups GustavoLacerda n00c jonilaserson dakelley idoerg orzenil ela503 natstreet druvus azazello acn jasontsai jmeppley cisevol malcook Neeperando djkt BergmanLab SIMR bioinformatics
	A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 30. (25 July 2006), pp. 11240-11245. by Susanne M. D. Goldberg, Justin Johnson, Dana Busam, et al.Tamara Feldblyum, Steve Ferriera, Robert Friedman, Aaron Halpern, Hoda Khouri, Saul A. Kravitz, Federico M. Lauro, Kelvin Li, Yu-Hui Rogers, Robert Strausberg, Granger Sutton, Luke Tallon, Torsten Thomas, Eli Venter, Marvin Frazier, J. Craig Venter posted to 454 assembly pf454-paper short-read by APRegier on 2009-08-07 21:32:53 as along with 8 people and 5 groups justinhjohnson bjorns balicea dchughes azazello beatrizfernandez GustavoLacerda xingxu DeNovoAssembly-SIMR G4ID Microbial-Ecology Genetics-of-Gambling MBLAB
	Genome assembly reborn: recent computational challenges [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 354-366. by Mihai Pop posted to assembly pf454-paper short-read by APRegier on 2009-08-07 20:37:40 as along with 30 people and 1 group jfr hzoltan cthachuk GustavoLacerda n00c agbiotec shabhonam pachorip jmcq stevebs jonilaserson michaelbarton inesdesantiago GeeSharpMinor bertelsen aprasad ananta_samudra sandfire jmeppley mlangill fgibson ppgardne TRHvidsten pengchy robsyme nuin kiekyon natstreet druvus idoerg Journal picks
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by M. Pop, S. Salzberg posted to assembly pf454-paper review short-read by APRegier on 2009-08-07 20:35:24 as along with 36 people Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog n00c ptrobajo orzenil katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies [My Copy] PLoS ONE, Vol. 2, No. 5. (2007), e484. by Andreas Sundquist, Mostafa Ronaghi, Haixu Tang, Pavel Pevzner, Serafim Batzoglou posted to assembly short-read shrap by APRegier on 2009-08-07 20:31:25 as along with 12 people and 1 group n00c jessopher natstreet druvus idoerg dakelley GustavoLacerda orzenil guhjy azazello nedwards iris42 gatech-compgenomics
	Short read fragment assembly of bacterial genomes [My Copy] Genome Research, Vol. 18, No. 2. (1 February 2008), pp. 324-330. by Mark J. Chaisson, Pavel A. Pevzner posted to 454 assembly pf454-paper by APRegier on 2009-08-07 19:53:07 as along with 17 people n00c pachorip thegoose2 dakelley Neeperando hpaces idoerg druvus jasontsai acn orzenil azazello GustavoLacerda dandaman caseybrown iris42 tharris
	Figaro: a novel statistical method for vector sequence removal [My Copy] Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 462-467. by James R. White, Michael Roberts, James A. Yorke, Mihai Pop posted to assembly pf454-paper tool by APRegier on 2009-06-04 22:02:36 as along with 7 people and 1 group thegoose2 Neeperando operon druvus guhjy GustavoLacerda tharris LabDros
	A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1118-1124. by Tobias Rausch, Sergey Koren, Gennady Denisov, et al.David Weese, Anne-Katrin Emde, Andreas Doring, Knut Reinert posted to assembly short-read snps by APRegier on 2009-04-23 18:49:46 as along with 19 people and 2 groups jfr azazello hzoltan cthachuk GustavoLacerda jasontsai n00c nuin dakelley skembel Thaverkamp reyez TRHvidsten djkt hpaces pengchy natstreet druvus darian iSEEM Bioinformatics
	Sequencing of natural strains of Arabidopsis thaliana with short reads -- Ossowski et al. 0 (2008): gr.080200.108v1 -- Genome Res. [My Copy] posted to assembly short-read by APRegier on 2008-10-29 20:20:12 as along with 1 person GustavoLacerda
	Tracembler - software for in-silico chromosome walking in unassembled genomes [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (09 May 2007), 151. by Qunfeng Dong, Matthew Wilkerson, Volker Brendel posted to assembly comparative by APRegier on 2008-10-23 16:33:33 as along with 3 people cmzmasek druvus iris42

Note: You may cite this page as: http://www.citeulike.org/user/APRegier/tag/assembly

inversion-paper	35
structural	25
short-read	21
pf454-paper	18
human	16
assembly	16
inversions	15
anopheles	14
alignment	12
comparative	8
drosophila	8
polymorphism	8
plasmodium	7
variation	7
resequencing	7
population	6
evolution	6
snps	6
gene-family	5
copy-number	5
selection	5
genetics	4
network	4
speciation	4
2la	4
inference	4
multiple	4
recombination	3
454	3
quality	3
networks	3
hapmap	3
regulatory	3
tool	3
gaps	3
illumina	3
duplications	3
conserved	2
statistics	2
synteny	2
inversion	2
repeats	2
keepin-it-real	2
assembly-quality	2
structure	2
cancer	2
haplotype	2
plants	1
maq	1
transposons	1
lagan	1
review	1
scaffolding	1
multimodal	1
phylogenetics	1
visualization	1
identifiers	1
service	1
chromosomal	1
shotgun	1
coverage	1
expression	1
sequencing	1
mechanism	1
solid	1
mcmc	1
number	1
cgh	1
machine-learning	1
breakpoints	1
proteins	1
shrap	1
java	1
draft	1
copy	1
transcription	1
eqtl	1
mammals	1
celera	1
birds	1
short-reads	1
microarrays	1
web	1
disease	1

APRegier's assembly [16 articles] Export

APRegier's tags