APRegier's pf454-paper [18 articles] Export

Recent papers added to APRegier's library classified by the tag pf454-paper. You can also see everyone's pf454-paper.

	High-throughput genotyping by whole-genome resequencing. [My Copy] Genome research, Vol. 19, No. 6. (6 June 2009), pp. 1068-1076. by Xuehui Huang, Qi Feng, Qian Qian, et al.Qiang Zhao, Lu Wang, Ahong Wang, Jianping Guan, Danlin Fan, Qijun Weng, Tao Huang, Guojun Dong, Tao Sang, Bin Han posted to pf454-paper plants resequencing short-read snps by APRegier on 2009-08-10 16:27:17 as along with 9 people jandot n00c reyez sandfire djkt natstreet jbhiatt GeeSharpMinor langmead
	Aggressive assembly of pyrosequencing reads with mates [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2818-2824. by Jason R. Miller, Arthur L. Delcher, Sergey Koren, et al.Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, Granger Sutton posted to 454 assembly celera pf454-paper by APRegier on 2009-08-07 21:43:16 as along with 18 people and 2 groups darian GustavoLacerda n00c jonilaserson dakelley idoerg orzenil ela503 natstreet druvus azazello acn jasontsai jmeppley cisevol malcook Neeperando djkt BergmanLab SIMR bioinformatics
	A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 30. (25 July 2006), pp. 11240-11245. by Susanne M. D. Goldberg, Justin Johnson, Dana Busam, et al.Tamara Feldblyum, Steve Ferriera, Robert Friedman, Aaron Halpern, Hoda Khouri, Saul A. Kravitz, Federico M. Lauro, Kelvin Li, Yu-Hui Rogers, Robert Strausberg, Granger Sutton, Luke Tallon, Torsten Thomas, Eli Venter, Marvin Frazier, J. Craig Venter posted to 454 assembly pf454-paper short-read by APRegier on 2009-08-07 21:32:53 as along with 8 people and 5 groups justinhjohnson bjorns balicea dchughes azazello beatrizfernandez GustavoLacerda xingxu DeNovoAssembly-SIMR G4ID Microbial-Ecology Genetics-of-Gambling MBLAB
	Genome assembly reborn: recent computational challenges [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 354-366. by Mihai Pop posted to assembly pf454-paper short-read by APRegier on 2009-08-07 20:37:40 as along with 30 people and 1 group jfr hzoltan cthachuk GustavoLacerda n00c agbiotec shabhonam pachorip jmcq stevebs jonilaserson michaelbarton inesdesantiago GeeSharpMinor bertelsen aprasad ananta_samudra sandfire jmeppley mlangill fgibson ppgardne TRHvidsten pengchy robsyme nuin kiekyon natstreet druvus idoerg Journal picks
	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by M. Pop, S. Salzberg posted to assembly pf454-paper review short-read by APRegier on 2009-08-07 20:35:24 as along with 36 people Jporci cthachuk hzoltan hpaces heliopais imaginatio operon daforerog n00c ptrobajo orzenil katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	Short read fragment assembly of bacterial genomes [My Copy] Genome Research, Vol. 18, No. 2. (1 February 2008), pp. 324-330. by Mark J. Chaisson, Pavel A. Pevzner posted to 454 assembly pf454-paper by APRegier on 2009-08-07 19:53:07 as along with 17 people n00c pachorip thegoose2 dakelley Neeperando hpaces idoerg druvus jasontsai acn orzenil azazello GustavoLacerda dandaman caseybrown iris42 tharris
	Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements [My Copy] Genome Research, Vol. 14, No. 7. (July 2004), pp. 1394-1403. by Aaron C. E. Darling, Bob Mau, Frederick R. Blattner, Nicole T. Perna posted to alignment comparative multiple pf454-paper synteny tool by APRegier on 2009-08-07 19:48:46 as along with 13 people and 2 groups rneches foxpowa ArtemPankin hpaces Neeperando bcondon semrich operon catmat AaronDarling azazello mariakmejia druvus Khavkin's lab gatech-compgenomics
	SSAHA: a fast search method for large DNA databases. [My Copy] Genome research, Vol. 11, No. 10. (1 October 2001), pp. 1725-1729. by Z. Ning, A. J. Cox, J. C. Mullikin posted to alignment pf454-paper short-read by APRegier on 2009-07-22 20:26:02 as along with 17 people torfinnnome stharward adthrasher mattwa jmanning2k n00c jmcq natstreet druvus treangen umit mmartin timflutre bpb j3xucite lp2 dmc
	Figaro: a novel statistical method for vector sequence removal [My Copy] Bioinformatics, Vol. 24, No. 4. (15 February 2008), pp. 462-467. by James R. White, Michael Roberts, James A. Yorke, Mihai Pop posted to assembly pf454-paper tool by APRegier on 2009-06-04 22:02:36 as along with 7 people and 1 group thegoose2 Neeperando operon druvus guhjy GustavoLacerda tharris LabDros
	Whole-genome sequencing and variant discovery in C. elegans. [My Copy] Nature methods, Vol. 5, No. 2. (20 February 2008), pp. 183-188. by LaDeana W. Hillier, Gabor T. Marth, Aaron R. Quinlan, et al.David Dooling, Ginger Fewell, Derek Barnett, Paul Fox, Jarret I. Glasscock, Matthew Hickenbotham, Weichun Huang, Vincent J. Magrini, Ryan J. Richt, Sacha N. Sander, Donald A. Stewart, Michael Stromberg, Eric F. Tsung, Todd Wylie, Tim Schedl, Richard K. Wilson, Elaine R. Mardis posted to alignment pf454-paper short-read snps by APRegier on 2009-06-03 20:53:19 as along with 14 people seninp Annab n00c thegoose2 druvus semrich AaronDarling usagi-kirin matthewsuderman inesdesantiago orzenil mdimon farhat tharris
	Population Genomics: Whole-Genome Analysis of Polymorphism and Divergence in Drosophila simulans [My Copy] PLoS Biol, Vol. 5, No. 11. (6 November 2007), e310. by David J. Begun, Alisha K. Holloway, Kristian Stevens, et al.Ladeana W. Hillier, Yu-Ping Poh, Matthew W. Hahn, Phillip M. Nista, Corbin D. Jones, Andrew D. Kern, Colin N. Dewey, Lior Pachter, Eugene Myers, Charles H. Langley posted to pf454-paper by APRegier on 2009-06-03 20:39:00 as along with 8 people and 4 groups jlin daveGerrard juanitogarcia cwbrown xingxu caseybrown Neeperando druvus BergmanLab Computational-Genomics EisenLab Notre Dame Bioinformatics
	Alignment and Analysis of Closely Related Genomes [My Copy] Bioinformatics and Computational Biology In BICoB '09: Proceedings of the 1st International Conference on Bioinformatics and Computational Biology (2009), pp. 343-352. by Allison Regier, Michael Olson, Scott Emrich posted to alignment pf454-paper plasmodium by APRegier on 2009-06-03 20:36:45 as along with 1 person Neeperando
	A geometric approach for classification and comparison of structural variants. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i222-230. by Suzanne Sindi, Elena Helman, Ali Bashir, Benjamin J. Raphael posted to copy-number inversion-paper pf454-paper structural by APRegier on 2009-06-02 19:24:48 as along with 6 people and 1 group jessopher rdiaz dakelley operon jonilaserson AlexBateman Journal picks
	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted to inversion-paper pf454-paper resequencing structural variation by APRegier on 2009-06-02 17:58:11 as along with 18 people darian hzoltan n00c rdiaz aezrin jandot GustavoLacerda guhjy jessopher megraw jonilaserson chrisamiller dandaman sameersoi djkt dakelley natstreet druvus
	PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data [My Copy] Genome Biology, Vol. 10, No. 2. (23 February 2009), R23. by Jan Korbel, Alexej Abyzov, Xinmeng Mu, et al.Nicholas Carriero, Philip Cayting, Zhengdong Zhang, Michael Snyder, Mark Gerstein posted to inversion-paper pf454-paper structural tool by APRegier on 2009-05-13 20:44:09 as along with 13 people humburg n00c orzenil adthrasher jessopher jrvalcourt dakelley Neeperando smiddha natstreet djkt poschm druvus
	Genome assembly comparison identifies structural variants in the human genome [My Copy] Nature Genetics, Vol. 38, No. 12. (22 November 2006), pp. 1413-1418. by Razi Khaja, Junjun Zhang, Jeffrey R. Macdonald, et al.Yongshu He, Ann M. Joseph-George, John Wei, Muhammad A. Rafiq, Cheng Qian, Mary Shago, Lorena Pantano, Hiroyuki Aburatani, Keith Jones, Richard Redon, Matthew Hurles, Lluis Armengol, Xavier Estivill, Richard J. Mural, Charles Lee, Stephen W. Scherer, Lars Feuk posted to human inversion-paper pf454-paper structural by APRegier on 2009-04-27 17:16:17 as along with 1 person and 1 group bpb Bioinformatics
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science In Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, A. C. Eugenia Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted to inversion-paper inversions pf454-paper structural by APRegier on 2009-04-27 16:23:25 as along with 22 people and 2 groups torfinnnome jandot n00c jonilaserson jrvalcourt jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dpollard dchughes AaronDarling rdiaz giovanni jlangdon annacarina07 Neeperando jfr caseybrown Journal picks EisenLab
	A robust framework for detecting structural variations in a genome [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i59-67. by Seunghak Lee, Elango Cheran, Michael Brudno posted to inversion-paper pf454-paper structural variation by APRegier on 2008-08-15 22:01:13 as along with 11 people n00c matted darian dakelley jonilaserson rdiaz balicea Neeperando kittipat matthewsuderman raistrick

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inversion-paper	35
structural	25
short-read	21
pf454-paper	18
human	16
assembly	16
inversions	15
anopheles	14
alignment	12
comparative	8
drosophila	8
polymorphism	8
plasmodium	7
variation	7
resequencing	7
population	6
evolution	6
snps	6
gene-family	5
copy-number	5
selection	5
genetics	4
network	4
speciation	4
2la	4
inference	4
multiple	4
recombination	3
454	3
quality	3
networks	3
hapmap	3
regulatory	3
tool	3
gaps	3
illumina	3
duplications	3
conserved	2
statistics	2
synteny	2
inversion	2
repeats	2
keepin-it-real	2
assembly-quality	2
structure	2
cancer	2
haplotype	2
plants	1
maq	1
transposons	1
lagan	1
review	1
scaffolding	1
multimodal	1
phylogenetics	1
visualization	1
identifiers	1
service	1
chromosomal	1
shotgun	1
coverage	1
expression	1
sequencing	1
mechanism	1
solid	1
mcmc	1
number	1
cgh	1
machine-learning	1
breakpoints	1
proteins	1
shrap	1
java	1
draft	1
copy	1
transcription	1
eqtl	1
mammals	1
celera	1
birds	1
short-reads	1
microarrays	1
web	1
disease	1

APRegier's pf454-paper [18 articles] Export

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