APRegier's structural [25 articles] Export

Recent papers added to APRegier's library classified by the tag structural. You can also see everyone's structural.

	Mobile elements create structural variation: Analysis of a complete human genome [My Copy] Genome Research, Vol. 19, No. 9. (13 September 2009), pp. 1516-1526. by Jinchuan Xing, Yuhua Zhang, Kyudong Han, et al.Abdel H. Salem, Shurjo K. Sen, Chad D. Huff, Qiong Zhou, Ewen F. Kirkness, Samuel Levy, Mark A. Batzer, Lynn B. Jorde posted to transposons structural human by APRegier on 2009-09-02 16:45:11 as along with 10 people and 1 group operon n00c djkt sameersoi dchughes fenghezi jandot Dulcinea natstreet JustinCrocker Journal picks
	Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding [My Copy] Genome Research, Vol. 19, No. 9. (22 September 2009), pp. 1527-1541. by Kevin J. McKernan, Heather E. Peckham, Gina L. Costa, et al.Stephen F. McLaughlin, Yutao Fu, Eric F. Tsung, Christopher R. Clouser, Cisyla Duncan, Jeffrey K. Ichikawa, Clarence C. Lee, Zheng Zhang, Swati S. Ranade, Eileen T. Dimalanta, Fiona C. Hyland, Tanya D. Sokolsky, Lei Zhang, Andrew Sheridan, Haoning Fu, Cynthia L. Hendrickson, Bin Li, Lev Kotler, Jeremy R. Stuart, Joel A. Malek, Jonathan M. Manning, Alena A. Antipova, Damon S. Perez, Michael P. Moore, Kathleen C. Hayashibara, Michael R. Lyons, Robert E. Beaudoin, Brittany E. Coleman, Michael W. Laptewicz, Adam E. Sannicandro, Michael D. Rhodes, Rajesh K. Gottimukkala, Shan Yang, Vineet Bafna, Ali Bashir, Andrew MacBride, Can Alkan, Jeffrey M. Kidd, Evan E. Eichler, Martin G. Reese, Francisco M. De La Vega, Alan P. Blanchard posted to structural solid short-read resequencing human by APRegier on 2009-09-02 16:44:15 as along with 17 people hzoltan gbenson adijr chrisamiller heliopais daforerog druvus djkt psique sameersoi fenghezi jmanning2k xingxu pkonings n00c jandot natstreet
	A common inversion under selection in Europeans. [My Copy] Nature genetics, Vol. 37, No. 2. (16 February 2005), pp. 129-137. by Hreinn Stefansson, Agnar Helgason, Gudmar Thorleifsson, et al.Valgerdur Steinthorsdottir, Gisli Masson, John Barnard, Adam Baker, Aslaug Jonasdottir, Andres Ingason, Vala G. Gudnadottir, Natasa Desnica, Andrew Hicks, Arnaldur Gylfason, Daniel F. Gudbjartsson, Gudrun M. Jonsdottir, Jesus Sainz, Kari Agnarsson, Birgitta Birgisdottir, Shyamali Ghosh, Adalheidur Olafsdottir, Jean-Baptiste B. Cazier, Kristleifur Kristjansson, Michael L. Frigge, Thorgeir E. Thorgeirsson, Jeffrey R. Gulcher, Augustine Kong, Kari Stefansson posted to human inversion-paper inversions selection structural by APRegier on 2009-06-24 16:36:24 as along with 4 people vplagnol giovanni daforerog kndiaye
	Structural variation in the human genome [My Copy] Nature Reviews Genetics, Vol. 7, No. 2. (01 February 2006), pp. 85-97. by Lars Feuk, Andrew R. Carson, Stephen W. Scherer posted to human inversion-paper inversions structural by APRegier on 2009-06-24 16:33:05 as along with 25 people and 11 groups ajbattle bertelsen baizhang Neeperando xingxu daforerog psique Zephyrus dlobo jandot cgreal balajis bala balicea dchughes tabu darcyduke adepace AaronDarling rdiaz massivemayhem cat_worth jmrivort ccr Lip GEB CGREL structural_bioinformatics Bioinformatics EisenLab SFX-Verde-team-MITLibraries G4ID G-quadruplex Supramolecular DictyosteliumGroup Genetics-of-Gambling
	Structural dynamics of eukaryotic chromosome evolution. [My Copy] Science (New York, N.Y.), Vol. 301, No. 5634. (8 August 2003), pp. 793-797. by E. E. Eichler, D. Sankoff posted to evolution structural by APRegier on 2009-06-23 22:27:34 as along with 4 people Annab timflutre david_parsons sharpton
	A geometric approach for classification and comparison of structural variants. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i222-230. by Suzanne Sindi, Elena Helman, Ali Bashir, Benjamin J. Raphael posted to copy-number inversion-paper pf454-paper structural by APRegier on 2009-06-02 19:24:48 as along with 6 people and 1 group jessopher rdiaz dakelley operon jonilaserson AlexBateman Journal picks
	MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions : Article : Nature Methods [My Copy] Nature Methods, Vol. advanced online publication (31 May 2009) by Seunghak Lee, Fereydoun Hormozdiari, Can Alkan, Michael Brudno posted to inversion-paper structural by APRegier on 2009-06-02 18:09:33 as
	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted to inversion-paper pf454-paper resequencing structural variation by APRegier on 2009-06-02 17:58:11 as along with 18 people darian hzoltan n00c rdiaz aezrin jandot GustavoLacerda guhjy jessopher megraw jonilaserson chrisamiller dandaman sameersoi djkt dakelley natstreet druvus
	Fine scale structural variants distinguish the genomes of Drosophila melanogaster and D. pseudoobscura [My Copy] Genome Biology, Vol. 7 (27 July 2006), R67. by Stuart J. Macdonald, Anthony D. Long posted to drosophila inversion-paper structural by APRegier on 2009-05-13 21:37:54 as along with 1 person mimulus_99
	PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data [My Copy] Genome Biology, Vol. 10, No. 2. (23 February 2009), R23. by Jan Korbel, Alexej Abyzov, Xinmeng Mu, et al.Nicholas Carriero, Philip Cayting, Zhengdong Zhang, Michael Snyder, Mark Gerstein posted to inversion-paper pf454-paper structural tool by APRegier on 2009-05-13 20:44:09 as along with 12 people n00c orzenil adthrasher jessopher jrvalcourt dakelley Neeperando smiddha natstreet djkt poschm druvus
	Scanning the human genome at kilobase resolution. [My Copy] Genome Res (21 February 2008) by Jun Chen, Yeong C C. Kim, Yong-Chul C. Jung, et al.Zhenyu Xuan, Geoff Dworkin, Yanming Zhang, Michael Q Q. Zhang, San Ming M. Wang posted to human inversion-paper structural by APRegier on 2009-04-27 17:25:18 as along with 2 people inesdesantiago guhjy
	The population genetics of structural variation. [My Copy] Nature genetics, Vol. 39, No. 7 Suppl. (July 2007) by Donald F. Conrad, Matthew E. Hurles posted to genetics human inversion-paper population structural by APRegier on 2009-04-27 17:17:56 as along with 5 people sameersoi guhjy mrkrause rdiaz jlangdon
	Genome assembly comparison identifies structural variants in the human genome [My Copy] Nature Genetics, Vol. 38, No. 12. (22 November 2006), pp. 1413-1418. by Razi Khaja, Junjun Zhang, Jeffrey R. Macdonald, et al.Yongshu He, Ann M. Joseph-George, John Wei, Muhammad A. Rafiq, Cheng Qian, Mary Shago, Lorena Pantano, Hiroyuki Aburatani, Keith Jones, Richard Redon, Matthew Hurles, Lluis Armengol, Xavier Estivill, Richard J. Mural, Charles Lee, Stephen W. Scherer, Lars Feuk posted to human inversion-paper pf454-paper structural by APRegier on 2009-04-27 17:16:17 as along with 1 person and 1 group bpb Bioinformatics
	Genome Rearrangements in Mammalian Evolution: Lessons From Human and Mouse Genomes [My Copy] Genome Research, Vol. 13, No. 1. (1 January 2003), pp. 37-45. by Pavel Pevzner, Glenn Tesler posted to inversion-paper structural synteny by APRegier on 2009-04-27 17:09:42 as along with 2 people timflutre hausen
	Comparing Assemblies Using Fragments and Mate-Pairs [My Copy] In WABI '01: Proceedings of the First International Workshop on Algorithms in Bioinformatics (2001), pp. 294-306. by Daniel H. Huson, Aaron L. Halpern, Zhongwu Lai, Eugene W. Myers, Knut Reinert, Granger G. Sutton posted to assembly-quality inversion-paper structural by APRegier on 2009-04-27 16:55:38 as along with 1 person Neeperando
	Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing. [My Copy] Nature genetics, Vol. 40, No. 6. (27 June 2008), pp. 722-729. by Peter J. Campbell, Philip J. Stephens, Erin D. Pleasance, et al.Sarah O'Meara, Heng Li, Thomas Santarius, Lucy A. Stebbings, Catherine Leroy, Sarah Edkins, Claire Hardy, Jon W. Teague, Andrew Menzies, Ian Goodhead, Daniel J. Turner, Christopher M. Clee, Michael A. Quail, Antony Cox, Clive Brown, Richard Durbin, Matthew E. Hurles, Paul A. Edwards, Graham R. Bignell, Michael R. Stratton, P. Andrew Futreal posted to cancer inversion-paper structural by APRegier on 2009-04-27 16:52:36 as along with 12 people chvlyl dakelley myzhang jessopher frohike smiddha xingxu daed matthewsuderman jfr caseybrown chrisamiller
	Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer [My Copy] PLoS Comput Biol, Vol. 4, No. 4. (25 April 2008), e1000051. by Ali Bashir, Stanislav Volik, Colin Collins, Vineet Bafna, Benjamin J. Raphael posted to inversion-paper structural variation by APRegier on 2009-04-27 16:36:32 as along with 5 people dakelley jessopher iris42 matthewsuderman vega
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, A. C. Eugenia Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted to inversion-paper inversions pf454-paper structural by APRegier on 2009-04-27 16:23:25 as along with 22 people and 2 groups torfinnnome jandot n00c jonilaserson jrvalcourt jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dpollard dchughes AaronDarling rdiaz giovanni jlangdon annacarina07 Neeperando jfr caseybrown Journal picks EisenLab
	Fine-scale structural variation of the human genome [My Copy] Nature Genetics, Vol. 37, No. 7. (15 May 2005), pp. 727-732. by Eray Tuzun, Andrew J. Sharp, Jeffrey A. Bailey, et al.Rajinder Kaul, Anne V. Morrison, Lisa M. Pertz, Eric Haugen, Hillary Hayden, Donna Albertson, Daniel Pinkel, Maynard V. Olson, Evan E. Eichler posted to inversion-paper structural by APRegier on 2009-04-27 16:19:07 as along with 5 people waszak matthewsuderman bpb pcahan1 Neeperando
	A Novel Approach for Determining Cancer Genomic Breakpoints in the Presence of Normal DNA [My Copy] PLoS ONE, Vol. 2, No. 4. (2007), e380. by Yu-Tsueng Liu, Dennis A. Carson posted to cancer human structural variation by APRegier on 2009-04-13 18:27:29 as
	Mapping and sequencing of structural variation from eight human genomes [My Copy] Nature, Vol. 453, No. 7191. (01 May 2008), pp. 56-64. by Jeffrey M. Kidd, Gregory M. Cooper, William F. Donahue, et al.Hillary S. Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, N. Alice Yamada, Peter Tsang, Tera L. Newman, Eray Tuzun, Ze Cheng, Heather M. Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A. Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin McKernan, Lin Chen, Maika Malig, Joshua D. Smith, Joshua M. Korn, Steven A. McCarroll, David A. Altshuler, Daniel A. Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A. Nickerson, James C. Mullikin, Richard K. Wilson, Laurakay Bruhn, Maynard V. Olson, Rajinder Kaul, Douglas R. Smith, Evan E. Eichler posted to human inversion-paper structural variation by APRegier on 2009-04-13 18:20:00 as along with 35 people and 2 groups hzoltan n00c daed fstrozzi sameersoi jonilaserson ilyashl rdiaz dakelley xingxu alweber Annab smiddha daforerog vkwn frohike waszak matthewsuderman jfr hpaces Ema bpb dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller guhjy skoch3 GeneGo Koch_Lab
	Mapping translocation breakpoints by next-generation sequencing -- Chen et al. 18 (7): 1143 -- Genome Res. [My Copy] posted to short-read structural variation by APRegier on 2008-10-31 14:44:50 as
	Defensins and the dynamic genome: What we can learn from structural variation at human chromosome band 8p23.1 -- Hollox et al. 18 (11): 1686 -- Genome Res. [My Copy] posted to duplications inversions polymorphism structural variation by APRegier on 2008-10-30 17:48:29 as
	A robust framework for detecting structural variations in a genome [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i59-67. by Seunghak Lee, Elango Cheran, Michael Brudno posted to inversion-paper pf454-paper structural variation by APRegier on 2008-08-15 22:01:13 as along with 10 people matted darian dakelley jonilaserson rdiaz balicea Neeperando kittipat matthewsuderman raistrick
	Mapping translocation breakpoints by next-generation sequencing [My Copy] Genome Research, Vol. 18, No. 7. (7 July 2008), pp. 1143-1149. by Wei Chen, Vera Kalscheu, Andreas Tzschach, et al.Corinna Menzel, Reinhard Ullmann, Marcel Schulz, Fikret Erdogan, Na Li, Zofia Kijas, Ger Arkesteijn, Isidora, Margret Goetz-Sothmann, Uwe Heinrich, Imma Rost, Andreas Dufke, Ute Grasshoff, Birgitta, Martin Vingron, Hans posted to breakpoints short-read structural by APRegier on 2008-07-01 19:18:19 as along with 8 people n00c darian stubrown sameersoi nuin usagi-kirin caseybrown Neeperando

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inversion-paper	35
structural	25
short-read	21
pf454-paper	18
human	16
assembly	16
inversions	15
anopheles	14
alignment	12
comparative	8
drosophila	8
polymorphism	8
plasmodium	7
variation	7
resequencing	7
population	6
evolution	6
snps	6
gene-family	5
copy-number	5
selection	5
genetics	4
network	4
speciation	4
2la	4
inference	4
multiple	4
recombination	3
454	3
quality	3
networks	3
hapmap	3
regulatory	3
tool	3
gaps	3
illumina	3
duplications	3
conserved	2
statistics	2
synteny	2
inversion	2
repeats	2
keepin-it-real	2
assembly-quality	2
structure	2
cancer	2
haplotype	2
plants	1
maq	1
transposons	1
lagan	1
review	1
scaffolding	1
multimodal	1
phylogenetics	1
visualization	1
identifiers	1
service	1
chromosomal	1
shotgun	1
coverage	1
expression	1
sequencing	1
mechanism	1
solid	1
mcmc	1
number	1
cgh	1
machine-learning	1
breakpoints	1
proteins	1
shrap	1
java	1
draft	1
copy	1
transcription	1
eqtl	1
mammals	1
celera	1
birds	1
short-reads	1
microarrays	1
web	1
disease	1

APRegier's structural [25 articles] Export

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