A_Coletta_Thesis's dna [26 articles] Export

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	Extended Weak Bonding Interactions in DNA: π-Stacking (Base−Base), Base−Backbone, and Backbone−Backbone Interactions† [My Copy] The Journal of Physical Chemistry B, Vol. 110, No. 1. (1 January 2006), pp. 563-578. by Cherif F. Matta, Norberto Castillo, Russell J. Boyd posted to dna dft ab-initio by A_Coletta_Thesis on 2009-10-30 23:50:42 as along with 1 group Structural Biology Group TorVergata
	Chapter 4 Modeling Protein–Protein and Protein–Nucleic Acid Interactions: Structure, Thermodynamics, and Kinetics [My Copy] Annual Reports in Computational Chemistry, Vol. 4 (2008), pp. 67-87. by H. Zhou, S. Qin, H. Tjong posted to protein molecular_dynamics modeling dna by A_Coletta_Thesis on 2009-10-06 11:31:19 as along with 1 person and 2 groups sobolevnrm Structural Biology Group TorVergata baker-group
	A single mutation in the 729 residue modulates human DNA topoisomerase IB DNA binding and drug resistance [My Copy] Nucl. Acids Res., Vol. 36, No. 17. (1 October 2008), pp. 5635-5644. by Carmen Losasso, Erica Cretaio, Paola Fiorani, Ilda D'Annessa, Giovanni Chillemi, Piero Benedetti posted to topoisomerase mutants inhibitors dna by A_Coletta_Thesis on 2009-09-28 09:50:50 as along with 1 person and 1 group moonycinzia Structural Biology Group TorVergata
	Interplay of DNA supercoiling and catenation during the segregation of sister duplexes [My Copy] Nucl. Acids Res., Vol. 37, No. 15. (1 August 2009), pp. 5126-5137. by Maria L. Martinez-Robles, Guillaume Witz, Pablo Hernandez, Jorge B. Schvartzman, Andrzej Stasiak, Dora B. Krimer posted to molecular_dynamics dna coarse_grained by A_Coletta_Thesis on 2009-09-20 12:07:08 as along with 1 group Structural Biology Group TorVergata
	Mutational analysis of the preferential binding of human topoisomerase I to supercoiled DNA [My Copy] FEBS Journal, Vol. 9999, No. 9999. (2009) by Zheng Yang, James F. Carey, James J. Champoux posted to topoisomerase supercoiled_dna dna_binding dna by A_Coletta_Thesis on 2009-09-15 13:55:46 as along with 1 group Structural Biology Group TorVergata
	Docking Studies on DNA-Ligand Interactions: Building and Application of a Protocol To Identify the Binding Mode [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 8. (24 August 2009), pp. 1925-1935. by Clarisse G. Ricci, Paulo A. Netz posted to molecular_dynamics docking dna by A_Coletta_Thesis on 2009-09-15 12:06:49 as along with 1 group Structural Biology Group TorVergata
	Binding of Topotecan to a Nicked DNA Oligomer in Solution [My Copy] Chemistry - A European Journal, Vol. 14, No. 9. (2008), pp. 2788-2794. by W. Bocian, R. Kawęcki, E. Bednarek, et al.J. Sitkowski, M. P. Williamson, P. E. Hansen, L. Kozerski posted to topotecan nmr dna_oligomer dna by A_Coletta_Thesis on 2009-09-14 12:00:26 as along with 1 group Structural Biology Group TorVergata
	Vaccinia DNA Topoisomerase I: Evidence Supporting a Free Rotation Mechanism for DNA Supercoil Relaxation† [My Copy] Biochemistry, Vol. 36, No. 17. (1 April 1997), pp. 5212-5222. by James T. Stivers, Thomas K. Harris, Albert S. Mildvan posted to vaccinia topoisomerase dna by A_Coletta_Thesis on 2009-09-11 10:10:49 as along with 1 group Structural Biology Group TorVergata
	The Pathway of Oligomeric DNA Melting Investigated by Molecular Dynamics Simulations☆ [My Copy] Biophysical Journal, Vol. 95, No. 12. (15 December 2008), pp. 5618-5626. by Ka-Yiu Wong, Montgomery B. Pettitt posted to dna molecular_dynamics by A_Coletta_Thesis on 2009-06-17 14:36:12 as along with 1 person and 1 group Vincent_Rouilly Structural Biology Group TorVergata
	Synthesis and RNA Binding Selectivity of Oligonucleotides Modified with Five-Atom Thioacetamido Nucleic Acid Backbone Structures [My Copy] Organic Letters, Vol. 9, No. 14. (1 July 2007), pp. 2697-2700. by Khirud Gogoi, Anita D. Gunjal, Usha D. Phalgune, Vaijayanti A. Kumar posted to dna modification by A_Coletta_Thesis on 2009-03-27 14:24:57 as along with 1 group Structural Biology Group TorVergata
	DNA Binding of Tilorone: 1H NMR and Calorimetric Studies of the Intercalation [My Copy] Biochemistry, Vol. 46, No. 27. (1 July 2007), pp. 8156-8163. by Tomoki Nishimura, Tadashi Okobira, Andrew M. Kelly, Naohiko Shimada, Yoichi Takeda, Kazuo Sakurai posted to binding calorimetric dna nmr by A_Coletta_Thesis on 2009-03-10 21:35:59 as along with 1 group Structural Biology Group TorVergata
	Effects for the Incorporation of Five-atom Thioacetamido Nucleic Acid (TANA) Backbone on Hybridization Thermodynamics and Kinetics of DNA Duplexes [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Harleen Kaur, Amit Arora, K. Gogoi, et al.P. Solanke, Anita D. Gunjal, Vaijayanti A. Kumar, Souvik Maiti posted to dna modification by A_Coletta_Thesis on 2009-02-25 17:11:25 as along with 1 group Structural Biology Group TorVergata
	Guarding the GenomeElectrostatic Repulsion of Water by DNA Suppresses a Potent Nuclease Activity of Topoisomerase IB [My Copy] Molecular Cell, Vol. 12, No. 1. (July 2003), pp. 199-208. by L. Tian, C. Claeboe, S. Hecht, S. Shuman posted to dna topoisomerase by A_Coletta_Thesis on 2009-01-14 18:13:40 as along with 1 group Structural Biology Group TorVergata
	Torque and dynamics of linking number relaxation in stretched supercoiled DNA [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 76, No. 2. (2007) by John F. Marko posted to dna supercoiling by A_Coletta_Thesis on 2009-01-14 16:23:13 as along with 1 group Structural Biology Group TorVergata
	Atomistic Simulation of the DNA Helix−Coil Transition† [My Copy] The Journal of Physical Chemistry A, Vol. 111, No. 49. (1 December 2007), pp. 12349-12354. by Stefano Piana posted to dna folding metadynamics molecular_dynamics by A_Coletta_Thesis on 2009-01-14 16:09:51 as along with 1 group Structural Biology Group TorVergata
	DNA–psoralens molecular recognition using molecular dynamics [My Copy] Il Farmaco, Vol. 54, No. 4. (30 April 1999), pp. 202-212. by R. Boggia posted to dna docking molecular_dynamics psoralens by A_Coletta_Thesis on 2009-01-14 14:47:40 as along with 1 group Structural Biology Group TorVergata
	Dissociation of minor groove binders from DNA: insights from metadynamics simulations. [My Copy] Nucleic acids research, Vol. 36, No. 18. (October 2008), pp. 5910-5921. by A. V. Vargiu, P. Ruggerone, A. Magistrato, P. Carloni posted to dna docking free-energy metadynamics by A_Coletta_Thesis on 2008-12-27 17:12:22 as along with 1 group Structural Biology Group TorVergata
	A standard reference frame for the description of nucleic acid base-pair geometry, [My Copy] Journal of Molecular Biology, Vol. 313, No. 1. (12 October 2001), pp. 229-237. by W. Olson posted to dna structure by A_Coletta_Thesis on 2008-12-25 16:35:28 as along with 2 people and 1 group oteri Elena_Zubova Structural Biology Group TorVergata
	Hydration pattern of A4T4 and T4A4 DNA: A molecular dynamics study [My Copy] Biochemical and Biophysical Research Communications, Vol. 355, No. 4. (20 April 2007), pp. 1081-1086. by C. Balasubramanian, R. Ojha, S. Maiti posted to dna molecular_dynamics by A_Coletta_Thesis on 2008-10-27 11:13:17 as
	Binding of berberine to human telomeric quadruplex spectroscopic, calorimetric and molecular modeling studies [My Copy] FEBS Journal, Vol. 275, No. 15. (August 2008), pp. 3971-3983. by Arora, Amit, Balasubramanian, et al. Chandramouli, Kumar, Niti, Agrawal, Saurabh, Ojha, P. Rajendra, Maiti, Souvik posted to dna isoquinoline modeling by A_Coletta_Thesis on 2008-10-27 11:12:43 as
	Light-scattering studies on supercoil unwinding. [My Copy] The Biochemical journal, Vol. 133, No. 2. (June 1973), pp. 209-226. by A. M. Campbell, D. J. Jolly posted to dna scattering supercoiling by A_Coletta_Thesis on 2008-10-06 18:55:41 as
	Multiple binding modes of the camptothecin family to DNA oligomers. [My Copy] Chemistry (Weinheim an der Bergstrasse, Germany), Vol. 10, No. 22. (5 November 2004), pp. 5776-5787. by W. Bocian, R. Kawecki, E. Bednarek, et al.J. Sitkowski, A. Pietrzyk, M. P. Williamson, P. E. Hansen, L. Kozerski posted to ab-initio dft dna docking parametrization resp topotecan by A_Coletta_Thesis on 2008-10-01 10:54:50 as
	The structure-based design, synthesis and biological evaluation of DNA-binding bisintercalating bisanthrapyrazole anticancer compounds. [My Copy] Bioorganic & medicinal chemistry, Vol. 16, No. 7. (1 April 2008), pp. 3959-3968. by B. B. Hasinoff, H. Liang, X. Wu, et al.L. J. Guziec, F. S. Guziec, K. Marshall, J. C. Yalowich posted to dna docking inhibitors topoisomerase by A_Coletta_Thesis on 2008-10-01 10:38:59 as
	Preferential binding of human topoisomerase I to superhelical DNA. [My Copy] The EMBO journal, Vol. 14, No. 21. (1 November 1995), pp. 5399-5409. by K. R. Madden, L. Stewart, J. J. Champoux posted to topoisomerase dna_supercoiled dna by A_Coletta_Thesis on 2008-08-29 14:01:36 as
	Force field parameters for rotation around chi torsion axis in nucleic acids. [My Copy] Journal of computational chemistry (12 May 2008) by Hirotaka Ode, Yuri Matsuo, Saburo Neya, Tyuji Hoshino posted to ab-initio dna molecular_dynamics parametrization by A_Coletta_Thesis on 2008-07-24 15:34:56 as
	Development and validation of empirical force field parameters for netropsin. [My Copy] J Chem Inf Model, Vol. 45, No. 6. (2005), pp. 1546-1552. by U. Bren, M. Hodoscek, J. Koller posted to ab-initio dna parametrization by A_Coletta_Thesis on 2008-07-22 17:42:17 as

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topoisomerase	106
molecular_dynamics	103
ab-initio	88
camptothecin	52
parametrization	50
dft	33
dna	26
topotecan	24
inhibitors	23
abc	22
atp_binding_cassette	22
metadynamics	20
resp	20
force_field	18
modeling	18
spectra	16
coarse_grained	15
docking	15
nmr	15
td-dft	15
structure	14
protein	13
dim	11
indole	11
free-energy	10
tdp1	10
software	9
chemical_shifts	8
chemistry	8
folding	8
pmf	8
review	8
dielectric	7
qsar	6
solvent	6
spectroscopy	6
umbrella-sampling	6
apoptosis	5
frequency	5
giao	5
water	5
cancer	4
computation	4
irinotecan	4
isoquinoline	4
monte_carlo	4
neural_networks	4
domain	3
fluorescence	3
infra_red	3
leishmania	3
pcm	3
single_molecule	3
basis_set	2
binding	2
cd	2
clinical	2
drug_design	2
electrostatic	2
epr	2
gene	2
irreversible	2
modification	2
perturbation_theory	2
pme	2
poisson_boltzman	2
ribosome	2
rna	2
supercoiled_dna	2
supercoiling	2
thermodynamics	2
tumor	2
uv_spectra	2
vaccinia	2
activity	1
algorithm	1
antechamber	1
antibiotics	1
calorimetric	1
cluster_analysis	1
csgt	1
diffusion	1
dna_binding	1
dna_oligomer	1
dna_supercoiled	1
entropy	1
free_energy	1
genetic_algorithm	1
isocarbostyril	1
langevin	1
lanthanide	1
liouville	1
mitochondria	1
mutants	1
myoglobin	1
narciclasine	1
nucleoside	1
oniom	1
order_parameter	1
peptide	1
pk	1
population_analysis	1
psoralens	1
raman	1
reaction	1
replica_exchange	1
scaling	1
scattering	1
sequence_analysis	1
simulated_annealing	1
surface	1
synthesis	1
tip3p	1
transcription	1
wavelet	1

A_Coletta_Thesis's dna [26 articles] Export

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